Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12010 184 / 2e-48 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G17680 174 / 7e-45 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G36930 162 / 3e-41 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT5G45260 155 / 6e-39 WRKY ATWRKY52, SLH1, RRS1 SENSITIVE TO LOW HUMIDITY 1, RESISTANT TO RALSTONIA SOLANACEARUM 1, ARABIDOPSIS THALIANA WRKY DOMAIN PROTEIN 52, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G44510 155 / 7e-39 TAO1 target of AVRB operation1 (.1) AT5G45050 152 / 8e-38 WRKY ATWRKY16, TTR1 TOLERANT TO TOBACCO RINGSPOT NEPOVIRUS 1, Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT5G40910 149 / 5e-37 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT1G27180 149 / 7e-37 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G36140 149 / 9e-37 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41540 147 / 2e-36 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007030 [exp] 505 / 1e-170 AT4G12010 316 / 3e-94 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10017418 [exp] 500 / 3e-164 AT5G44510 335 / 1e-96 target of AVRB operation1 (.1) Lus10024150 [exp] 416 / 2e-135 AT1G69550 186 / 9e-49 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10001537 [exp] 409 / 2e-133 AT5G44510 175 / 1e-45 target of AVRB operation1 (.1) Lus10015648 [exp] 405 / 1e-126 AT4G12010 420 / 1e-126 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015650 [exp] 395 / 3e-126 AT4G12010 346 / 3e-103 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10010223 [exp] 379 / 7e-118 AT5G17680 218 / 6e-58 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10017420 [exp] 358 / 6e-115 AT1G69550 164 / 1e-42 disease resistance protein (TIR-NBS-LRR class) (.1) Lus10010221 [exp] 339 / 8e-103 AT5G17680 369 / 4e-109 disease resistance protein (TIR-NBS-LRR class), putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G070700 [exp] 227 / 1e-62 AT5G17680 722 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068200 [exp] 218 / 2e-59 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G069500 [exp] 216 / 1e-58 AT5G17680 711 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G068300 [exp] 212 / 1e-57 AT5G17680 580 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070001 [exp] 207 / 4e-56 AT5G17680 481 / 5e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070565 [exp] 206 / 1e-55 AT5G17680 482 / 3e-148 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G010800 [exp] 199 / 2e-53 AT5G17680 592 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.017G104301 [exp] 191 / 2e-50 AT5G17680 566 / 1e-178 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G113701 [exp] 189 / 6e-50 AT5G17680 596 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Potri.019G070393 [exp] 184 / 3e-48 AT5G17680 629 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0023 [flax] [poplar] P-loop_NTPase PF00931 [flax] [poplar] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Lus10042778 pacid=23181749 polypeptide=Lus10042778 locus=Lus10042778.g ID=Lus10042778.BGIv1.0 annot-version=v1.0 ATGGGCGGTGCGGGGAAAACAACTCTAGCTAAAGCGTGTTATGACAAGATAACTATGTCCTTGAAAGGAATCAAGCATCATTTTACTGGGAGCATTAGTG AGAAATGTGGAGATACAGATGGGGTTGAAGGAGTAGTGAGTCAGCTTTATTCAAAATTGTTGTCCGAGAACAACATCTATCGTCAAGATTTAGGTGCTAA GTTTCGACAGGAACGTCTTTCTCGCTCTAGGGTATTCATTGTTCTTGACGATGTGGAGACAACATCACGGCTGGAAAAAATCTTTCTGGGAGATATGACC ATGAGTCTCTTTGCTCCGGGGAGCAAAATTATTGTGACGACAAGAGATAAGAGAGTTCTGGATTATGCAAAGGCGATAGTATATACCGTCGCTGGTTTGA CTGATCGTGAATCCATTCAACTATTTAGCCTACGAGCTTTCAGGAACCATCACCCTCCTCGTGATTGGGAGGGTATGTCTCGTCTTGCAGCATCATATTG TAATGGAAACCCCTTGGCAATAAGAGTCCTTGGGGGTACATTGTTTAGTCAGGATAAATATTATTGGCAAAGCTTCTTGAGCGAGCTAAAGCTAATCCAG AATCCTGAAATCGGTGATATTCTTGAACGAAGTTGCAACAAACTAGGAGCTGAAGAAAAGAAAATATTTCTCGATGTCGCATGTTTCCTCTATGGAATAT CGAGATCTCGACTGATATCGTATATGTCAACCATGCATCTGTCTGCATATGCTAAAGTGAAGGATCTAATTGATAGAACCCTCTTAATTTGTGAAGGAAA GAATATCAAAGTGCACGGTTTGCTTAAGGAAATGGCTTGGAGTATAGTCAACAAGGAACCGAAGCTTGGAAAACGCAGCAGGTTAGTAGATGTTGATGAT ATTCACAAATTGCTGACAACTCAAGATGTTAAAGGCTGGACAACATCATTGCTCGACGTCACACACTGCCTAGTGATTATTTCAAGACAGTTGGGGGGAT TTGATTTAGATGGGACATCCCTTGAAGAGCTACCGAGTGCAATTTACAATGTCAAGCAAGATGGAGTCTTGCGCCTCAGTGGTGAAAACATTACCAAATT ACCTGCAATTACAACAAGCTTGAAGACTTTTTACTTGAGCCATACTTCAATACGAGAGATTGATTTCTATGATTATAATCATCGTCTGACGTCTTCGAAA TTAATATTACCGAGATTTTCCAAGCTGAAGGTTTCTAACAATTCGCAACTCGAGAGCCTGCCGAAGAGTATATGGAACATGGTCTTTCATCAACTCGAGA TTCGAGGGAGCCCGTTGATTGAAAGCTTGCCGGAGATCTCGCACCATGTTAACGGTATCCAAGAATTGAAGAAGCTTTATACGATTAATCTGAGCTACTG CAAGAGTCTCGAGTCAATCCCAAGCAGTATTCATAAGCTTTCGAACTTGCGAAAACTGATTATGTCTGGCTGTGAGAGTATTCGATCTCTATCAGAACTC CCACCAAATCTGATGAAACTGGATGTAAGTGGTTGCAAGTCTTTACAAGCGCTACCAAGCAACACATGTAAGCTGTTGCATCTGAATAAACTCCATTTTG AGGAATGCCCACAACTGGACCAGACTATACCTGTCGAAATTTTGGCAAATTTCCTCGTTCATCCCAGCTTGTCTTCATCACCGCAGTTGATGCACCGTGA AGTTGTATGTTCAAGAAGCGAGCTTCCGGAATGGTTAACGTACAAAAGCATGAACATGAAGAAGGAAGAGGAGGATTGTACTGTGGAGGTGGACTTGCCT CCTATTCCTGATGACACTGACCAACCAATCATTATTAAGGGAATTGCATTCGCCGTTGTGTTTGCTTCCAACTACTCTTGGGTGGAAATGAAATGCGATT GCAAGGTCGGCAACACCATCGTTGCATCTTGGCCTTCCCATATCAGTAAAGTTGAAGGGGATAACTCATCAGAAATTCTATGGTTGAAATTGGACAAGAG CTCATCAGGGGAGATGACCATGAAAAGTAAAGAAGAAGCGTGGTATGTCAAGTATGCTAGTCTCACACTTCCATTTCATTTCTATGTTCAAAAAAATAGG AAGATCAAAATAAAAAGATGTGGAGTCTCTTTGCTCTACTAG
AA sequence Show only first row Show all	>Lus10042778 pacid=23181749 polypeptide=Lus10042778 locus=Lus10042778.g ID=Lus10042778.BGIv1.0 annot-version=v1.0 MGGAGKTTLAKACYDKITMSLKGIKHHFTGSISEKCGDTDGVEGVVSQLYSKLLSENNIYRQDLGAKFRQERLSRSRVFIVLDDVETTSRLEKIFLGDMT MSLFAPGSKIIVTTRDKRVLDYAKAIVYTVAGLTDRESIQLFSLRAFRNHHPPRDWEGMSRLAASYCNGNPLAIRVLGGTLFSQDKYYWQSFLSELKLIQ NPEIGDILERSCNKLGAEEKKIFLDVACFLYGISRSRLISYMSTMHLSAYAKVKDLIDRTLLICEGKNIKVHGLLKEMAWSIVNKEPKLGKRSRLVDVDD IHKLLTTQDVKGWTTSLLDVTHCLVIISRQLGGFDLDGTSLEELPSAIYNVKQDGVLRLSGENITKLPAITTSLKTFYLSHTSIREIDFYDYNHRLTSSK LILPRFSKLKVSNNSQLESLPKSIWNMVFHQLEIRGSPLIESLPEISHHVNGIQELKKLYTINLSYCKSLESIPSSIHKLSNLRKLIMSGCESIRSLSEL PPNLMKLDVSGCKSLQALPSNTCKLLHLNKLHFEECPQLDQTIPVEILANFLVHPSLSSSPQLMHREVVCSRSELPEWLTYKSMNMKKEEEDCTVEVDLP PIPDDTDQPIIIKGIAFAVVFASNYSWVEMKCDCKVGNTIVASWPSHISKVEGDNSSEILWLKLDKSSSGEMTMKSKEEAWYVKYASLTLPFHFYVQKNR KIKIKRCGVSLLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G12010			Disease resistance protein (TI...		Lus10042778 [exp]	0	1
AT2G44260			Plant protein of unknown funct...		Lus10017582 [exp]	2.4	0.9000
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10036623 [exp]	2.8	0.9092
AT1G17930			Aminotransferase-like, plant m...		Lus10000686 [exp]	6.2	0.9026
AT2G25430			epsin N-terminal homology (ENT...		Lus10019402 [exp]	6.5	0.8677
AT5G06920		FLA21	FASCICLIN-like arabinogalactan...		Lus10020296 [exp]	8.8	0.8938
AT1G12600			UDP-N-acetylglucosamine (UAA) ...		Lus10006337 [exp]	9.9	0.8591
AT1G18210			Calcium-binding EF-hand family...		Lus10018012 [exp]	11.6	0.8840
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10016820 [exp]	12.3	0.9000
AT4G26110		NAP1;1, ATNAP1;...	ARABIDOPSIS THALIANA NUCLEOSOM...		Lus10026197 [exp]	15.3	0.8976
AT3G48420			Haloacid dehalogenase-like hyd...		Lus10033034 [exp]	15.7	0.8991

Compare expression of checked genes

Lus10042778 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.