Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21120 642 / 0 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT2G34960 566 / 0 CAT5 cationic amino acid transporter 5 (.1) AT1G17120 495 / 2e-169 CAT8 cationic amino acid transporter 8 (.1) AT3G10600 350 / 3e-113 CAT7 cationic amino acid transporter 7 (.1) AT5G04770 350 / 4e-113 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT3G03720 191 / 9e-53 CAT4 cationic amino acid transporter 4 (.1.2) AT1G05940 185 / 4e-51 CAT9 cationic amino acid transporter 9 (.1) AT5G36940 183 / 4e-50 CAT3 cationic amino acid transporter 3 (.1) AT1G58030 178 / 3e-48 CAT2 cationic amino acid transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001581 [exp] 625 / 0 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10023271 [exp] 624 / 0 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10005574 [exp] 488 / 2e-166 AT1G17120 811 / 0.0 cationic amino acid transporter 8 (.1) Lus10040142 [exp] 325 / 2e-103 AT5G04770 547 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10000962 [exp] 325 / 3e-103 AT5G04770 543 / 0.0 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Lus10028116 [exp] 256 / 1e-82 AT4G21120 199 / 2e-61 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10003697 [exp] 222 / 3e-65 AT4G21120 416 / 2e-140 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10028195 [exp] 213 / 3e-61 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10042898 [exp] 213 / 5e-61 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G131300 [exp] 632 / 0 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.015G133100 [exp] 629 / 0 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 625 / 0 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 625 / 0 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.003G154600 [exp] 560 / 0 AT2G34960 870 / 0.0 cationic amino acid transporter 5 (.1) Potri.001G378500 [exp] 496 / 1e-169 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1) Potri.008G017100 [exp] 359 / 1e-116 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.010G241000 [exp] 352 / 6e-114 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1) Potri.001G150700 [exp] 344 / 7e-111 AT5G04770 519 / 2e-179 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) Potri.003G083700 [exp] 336 / 9e-108 AT5G04770 509 / 7e-176 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10042817 pacid=23181736 polypeptide=Lus10042817 locus=Lus10042817.g ID=Lus10042817.BGIv1.0 annot-version=v1.0 ATGACGAACAATGACAACAATGGCGATCATGACGACACTACTGCTAGGCCGAAAAGGCAACGACGACCAAGACGGTGCTTTTGCGTCGACAAGGACGACT TCTTCCCGGAGGAGTCGTTTCAAAACTGGGGCAATTACATGAAGGCTCTCTCAAATACAATCCCCAGGCTGAAAAATCGACTCCTCTCCAGATCCATGGA CAGACTCGAGTTGCAAGACGTTCGAGCTCGGAGCGACAACGAGTTCAAGAGAACACTCAACTGGTGGGATCTAATCTGGTTCGGAATGGGCGCGGTCATG GGCGCCGGAATCTTCGTCCTCACCGGCGAAGCCGCCAAGCTCGACGCCGGACCCGCCGTCGTCGTCTCCTACTTCATCTCCGGCTTATGCGCCATGCTCT CCGTCTTGTGTTACAGCGAGTTCGCCGTCGAATTACCCGTCGCCGGAGGCTCGTACGCTTACCTCAGAGTCGAGCTCGGAGACTTCGTCGCCTACATTGC CGCCGGGAACATCCTATTCGAGTACATCGTCGCCGGAGCTAGCGTAGCAAGATCCTGGACTTCCTACTTCGCAACGCTATGTAACAGCGAACCAAACAGC TTCCGAATCCACGTCACTTCCATGGCTACGGATTACAATAACCTGGATCCAATTGCAGTCGGGATATCATTCCTGGTATGCTTAGCCGCATCGTGGAGCA TGAAAGCCTCGTCCAGATTCAATTCAATTACCACAATCCTTCACTTGCTCGTCTTGCTCTTCATCCTCGTCGCCGGTTTCTCAAAAGCCAACCCTGAAAA CTTTACCAAAAATTTCGCTCCGTTTGGAGTTCGTGGAGTAATGAAAGCTTCGGCAATGTTGTTCTTCGCCTATGTAGGTTTCGACGGAGTTGCTACGCTC GGAGAAGAGGTTAAAAATCCAGGAAGAGATATTCCTCTGGGACTGATCGGATCCATGACAGTAGTAATCATTTTTTACTGTTCTTTAGCAGCATGCCTCA CCTTGATGCAGAATTACACCCAGATTGATACAGATGCTGCTTTCTCCATAGCATTCAAATCCGCAGGGATGAATTGGGCGAAATACATAGTAGCATTCGG TGCTTTAAAAGGAATGACCACTGTTCTTCTTGCTAACGTCATTGCACAATCTCGATACTTCACTCATATAAGCCGTACTCACATGGCTCCTCCTGTTCTT GCTTACATTAATGCCAAAACTGGGACTCCGTTGGTAGCAACTGTTGTGATGACTGTAGCGAATTCGATTGTGGCATTCTTCACCAGCTTGGACGTTCTGT CGAATCTTCTGTCGATTTCTACGCTGTTTATTTTCTCGCTGGTGGCTCTGGCGCTTCTGGTTAGGAGATACTATCTGGCCGGGGAGACTAAGAGTTCGGA TAAGTGGAAGCTGGTCTTCTTTCTGGTGTTGATTGTGGGATCTTCGTGCGGTACTAGTGCTTACTGGGCGTATGGAAGATCGGGCGGATGGATTGGGTAC GCGATTACTGTGCCGGTATGGTTTCTGGCGACGCTTGGTCTGCAGGTGTTTGTGAAGATGGCTAGGAAGCCAAAGTTTTGGGGGGTGCCGTTCCTGCCAT GGCTGCCTTCTGCGAGTGTAGCTATGAATGTGTTCGTAATGGGATCTATTGACCCGGCATCTTTCGTTAGATTTGCACTCTGGTCGTTGGCATTGCTTGT GTACTATCTCTTTGTGGCTCTTCATGCTTCCTATGATGCCGCTAAGGAGATTGAGGGTGAGGGGGAAATCGATGGGACCGTTCGAATTGAACAAGGTCAA CAACAACCGGCCTCGCAGATTGACACACAATGTTAG
AA sequence Show only first row Show all	>Lus10042817 pacid=23181736 polypeptide=Lus10042817 locus=Lus10042817.g ID=Lus10042817.BGIv1.0 annot-version=v1.0 MTNNDNNGDHDDTTARPKRQRRPRRCFCVDKDDFFPEESFQNWGNYMKALSNTIPRLKNRLLSRSMDRLELQDVRARSDNEFKRTLNWWDLIWFGMGAVM GAGIFVLTGEAAKLDAGPAVVVSYFISGLCAMLSVLCYSEFAVELPVAGGSYAYLRVELGDFVAYIAAGNILFEYIVAGASVARSWTSYFATLCNSEPNS FRIHVTSMATDYNNLDPIAVGISFLVCLAASWSMKASSRFNSITTILHLLVLLFILVAGFSKANPENFTKNFAPFGVRGVMKASAMLFFAYVGFDGVATL GEEVKNPGRDIPLGLIGSMTVVIIFYCSLAACLTLMQNYTQIDTDAAFSIAFKSAGMNWAKYIVAFGALKGMTTVLLANVIAQSRYFTHISRTHMAPPVL AYINAKTGTPLVATVVMTVANSIVAFFTSLDVLSNLLSISTLFIFSLVALALLVRRYYLAGETKSSDKWKLVFFLVLIVGSSCGTSAYWAYGRSGGWIGY AITVPVWFLATLGLQVFVKMARKPKFWGVPFLPWLPSASVAMNVFVMGSIDPASFVRFALWSLALLVYYLFVALHASYDAAKEIEGEGEIDGTVRIEQGQ QQPASQIDTQC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Lus10042817 [exp]	0	1
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10014312 [exp]	4.1	0.7721
AT1G20650		ASG5	ALTERED SEED GERMINATION 5, Pr...		Lus10016021 [exp]	4.2	0.7535
AT3G07860			Ubiquitin-like superfamily pro...		Lus10041524 [exp]	5.8	0.6733
AT3G49730			Tetratricopeptide repeat (TPR)...		Lus10039021 [exp]	8.7	0.7310
AT1G31650		ATROPGEF14, ROP...	RHO guanyl-nucleotide exchange...		Lus10033282 [exp]	14.5	0.6943
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10037965 [exp]	19.8	0.6988
AT1G12390			Cornichon family protein (.1)		Lus10030270 [exp]	20.8	0.7170
					Lus10027520 [exp]	20.8	0.7028
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10030430 [exp]	31.3	0.6779
AT5G64860		DPE1	disproportionating enzyme (.1)		Lus10035845 [exp]	32.7	0.7262

Compare expression of checked genes

Lus10042817 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.