Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G56200 527 / 0 Transmembrane amino acid transporter family protein (.1) AT2G40420 485 / 3e-170 Transmembrane amino acid transporter family protein (.1) AT3G30390 394 / 3e-134 Transmembrane amino acid transporter family protein (.1.2) AT5G38820 386 / 4e-131 Transmembrane amino acid transporter family protein (.1) AT1G80510 286 / 9e-92 Transmembrane amino acid transporter family protein (.1) AT3G09330 66 / 3e-11 Transmembrane amino acid transporter family protein (.1) AT2G41190 66 / 3e-11 Transmembrane amino acid transporter family protein (.1) AT3G09340 64 / 6e-11 Transmembrane amino acid transporter family protein (.1) AT2G42005 62 / 3e-10 Transmembrane amino acid transporter family protein (.1) AT2G39130 58 / 9e-09 Transmembrane amino acid transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028165 [exp] 818 / 0 AT3G56200 541 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10007716 [exp] 400 / 2e-136 AT3G30390 514 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10018652 [exp] 388 / 1e-131 AT5G38820 499 / 3e-175 Transmembrane amino acid transporter family protein (.1) Lus10034353 [exp] 386 / 6e-131 AT3G30390 655 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10035140 [exp] 384 / 4e-130 AT3G30390 691 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10005099 [exp] 381 / 4e-129 AT3G30390 646 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10031964 [exp] 381 / 5e-129 AT3G30390 689 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10036845 [exp] 353 / 2e-118 AT3G30390 561 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Lus10034093 [exp] 303 / 3e-98 AT1G80510 658 / 0.0 Transmembrane amino acid transporter family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G181800 [exp] 639 / 0 AT3G56200 511 / 3e-180 Transmembrane amino acid transporter family protein (.1) Potri.002G114300 [exp] 399 / 2e-136 AT3G30390 516 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.017G106300 [exp] 397 / 2e-135 AT3G30390 625 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.004G111400 [exp] 385 / 7e-131 AT3G30390 643 / 0.0 Transmembrane amino acid transporter family protein (.1.2) Potri.001G204400 [exp] 282 / 3e-90 AT1G80510 560 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.003G011900 [exp] 280 / 3e-89 AT1G80510 611 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G136601 [exp] 191 / 5e-57 AT3G30390 315 / 4e-105 Transmembrane amino acid transporter family protein (.1.2) Potri.008G075500 [exp] 114 / 7e-30 AT3G56200 101 / 6e-26 Transmembrane amino acid transporter family protein (.1) Potri.008G036300 [exp] 60 / 1e-09 AT2G39130 691 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.010G128300 [exp] 57 / 1e-08 AT1G25530 687 / 0.0 Transmembrane amino acid transporter family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF01490 [flax] [poplar] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Lus10042864 pacid=23181822 polypeptide=Lus10042864 locus=Lus10042864.g ID=Lus10042864.BGIv1.0 annot-version=v1.0 ATGTCGCCGTCCACCGGAGAGTATGCTCCGCTACTTCCGGAACAGAAGAAGAAGCAAGGAGGCGAGGAGGAGGAACCCCGAGGATCCATCTCAGGGGCGG TGTTCAATGTCTCAACTAGCATAATCGGAGCTGGAATCATGTCAATTCCTGCTACCATCAAGGTCCTCGGAGTAATCCCTGCTTTTCTGATGATCGTTGC CATCGCCTGGCTTGCTGACGTCTCTGTCGAGTTGCTATTGAGGTACACTCACTCCGGACACTCCACCACTTACGCCGGAGTTATGAAGGAGGCCTTCGGC GGCTTCGGATCGGCGGCTGTTCAGATTTGCATCATGATTACTAATCTTGGATGTTTGATTATTTACCAGATCATCATCGGGGATGTTCTGACAGGGAAGG GGGAGCACTTGGGGGTATTGCAAGAATGGTTTGGGGTTTCATGGTGGAATGCTAGGGCATTTGCACTCTTCCTGGTTTTGATCTTTGTCATGCTTCCTTT GGCCATGTTCAAGCGACTTGAATCCCTCAAATTCAGTTCAGCCGTATCAGTTCTGTTGGCAATTATTTTCGTTGCCATAAGCTCGGTGATGGCGATTTAT GCACTTATACAAGGAAAAACCAACACACCAAGACTGTTGCCTGAGTTAGACAGCCAATCCTCCTTCTTTGAACTATTCACTGCTGTCCCGGTGATCGTCA CAGCTTTCACATTCCATTTCAATGGCAAGTACATCTTGCATCCCATTGGGTTCGAGCTGGGGAGCCCTTCAATCATGCTATCCGCTGTCAGAATCTCAAT GGTGCTATGTGCAGCCATCTACTTTGCAATCGGAATCTTCGGCTACCTTCTCTTCGGGGAATCAATCATGGCAGACATACTTGTGAACTTCGACAAGACC TCCGATACAGCAGCAGGTGCACTGCTGAACGACATTGTGAGGCTGAGCTATGCCCTCCACCTGATGCTGGTATTCCCCTTGCTGAACTTCTCGCTGAGGG CGAATCTTGACGAGTTCTTGTTCCCGAAGAAGCCCCTTCTGGCTAAAGACAATACCAGATTCTTCTCCCTCACTTTTGCGTTGCTGGTGTTGAGTTACTT GCTGGCAATTGCCATACCAGACATATGGTATTTCTTTCAGTTCATGGGGTCAACTACTGCAGTTTGCCTTGCCTTCATTTTCCCTGGTTCTATTGTACTA AGGGATGTGTATGGGATATCGACGAGGAGGGACAGGATATTGGGGGGAATAATGATAGTGCTGGCTGTAATTACAAGCGCCATTGCCGTATCAAGTAATA TCTATAGTTTGATTGGTGATAACCAGTAG
AA sequence Show only first row Show all	>Lus10042864 pacid=23181822 polypeptide=Lus10042864 locus=Lus10042864.g ID=Lus10042864.BGIv1.0 annot-version=v1.0 MSPSTGEYAPLLPEQKKKQGGEEEEPRGSISGAVFNVSTSIIGAGIMSIPATIKVLGVIPAFLMIVAIAWLADVSVELLLRYTHSGHSTTYAGVMKEAFG GFGSAAVQICIMITNLGCLIIYQIIIGDVLTGKGEHLGVLQEWFGVSWWNARAFALFLVLIFVMLPLAMFKRLESLKFSSAVSVLLAIIFVAISSVMAIY ALIQGKTNTPRLLPELDSQSSFFELFTAVPVIVTAFTFHFNGKYILHPIGFELGSPSIMLSAVRISMVLCAAIYFAIGIFGYLLFGESIMADILVNFDKT SDTAAGALLNDIVRLSYALHLMLVFPLLNFSLRANLDEFLFPKKPLLAKDNTRFFSLTFALLVLSYLLAIAIPDIWYFFQFMGSTTAVCLAFIFPGSIVL RDVYGISTRRDRILGGIMIVLAVITSAIAVSSNIYSLIGDNQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G56200			Transmembrane amino acid trans...		Lus10042864 [exp]	0	1
AT4G25770			alpha/beta-Hydrolases superfam...		Lus10006982 [exp]	1.7	0.9614
AT1G03590			Protein phosphatase 2C family ...		Lus10033708 [exp]	5.0	0.9472
AT4G18360			Aldolase-type TIM barrel famil...		Lus10023302 [exp]	6.2	0.9551
AT3G51520			diacylglycerol acyltransferase...		Lus10039135 [exp]	7.5	0.9514
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10015519 [exp]	9.2	0.9414
AT5G16120			alpha/beta-Hydrolases superfam...		Lus10009169 [exp]	9.6	0.9528
AT1G80730	C2H2ZnF	ATZFP1, ZFP1	ARABIDOPSIS THALIANA ZINC-FING...		Lus10014350 [exp]	9.8	0.9459
AT4G15560		AtCLA1, DXS, DX...	1-DEOXY-D-XYLULOSE 5-PHOSPHATE...		Lus10019991 [exp]	12.4	0.9422
AT3G57530		ATCPK32, CDPK32...	calcium-dependent protein kina...		Lus10026742 [exp]	13.4	0.9438
AT4G35030			Protein kinase superfamily pro...		Lus10013566 [exp]	13.5	0.9408

Compare expression of checked genes

Lus10042864 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.