Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G05940 660 / 0 CAT9 cationic amino acid transporter 9 (.1) AT3G03720 225 / 6e-66 CAT4 cationic amino acid transporter 4 (.1.2) AT2G34960 215 / 3e-62 CAT5 cationic amino acid transporter 5 (.1) AT4G21120 211 / 8e-61 CAT1, AAT1 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) AT5G04770 208 / 1e-59 CAT6, ATCAT6 ARABIDOPSIS THALIANA CATIONIC AMINO ACID TRANSPORTER 6, cationic amino acid transporter 6 (.1) AT1G58030 205 / 3e-58 CAT2 cationic amino acid transporter 2 (.1) AT1G17120 203 / 8e-58 CAT8 cationic amino acid transporter 8 (.1) AT5G36940 203 / 1e-57 CAT3 cationic amino acid transporter 3 (.1) AT3G10600 193 / 4e-54 CAT7 cationic amino acid transporter 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028195 [exp] 932 / 0 AT1G05940 763 / 0.0 cationic amino acid transporter 9 (.1) Lus10023271 [exp] 234 / 2e-69 AT4G21120 902 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10001581 [exp] 216 / 5e-61 AT4G21120 915 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10005574 [exp] 210 / 4e-60 AT1G17120 811 / 0.0 cationic amino acid transporter 8 (.1) Lus10042817 [exp] 209 / 9e-60 AT4G21120 731 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Lus10020322 [exp] 206 / 3e-58 AT1G58030 949 / 0.0 cationic amino acid transporter 2 (.1) Lus10005671 [exp] 205 / 4e-58 AT1G58030 958 / 0.0 cationic amino acid transporter 2 (.1) Lus10020320 [exp] 203 / 1e-57 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1) Lus10005687 [exp] 202 / 4e-57 AT3G03720 803 / 0.0 cationic amino acid transporter 4 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G137000 [exp] 697 / 0 AT1G05940 627 / 0.0 cationic amino acid transporter 9 (.1) Potri.015G133100 [exp] 221 / 1e-64 AT4G21120 845 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.012G131300 [exp] 221 / 2e-64 AT4G21120 848 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030900 [exp] 218 / 3e-63 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.013G030833 [exp] 218 / 3e-63 AT4G21120 833 / 0.0 CATIONIC AMINO ACID TRANSPORTER 1, amino acid transporter 1 (.1) Potri.001G378500 [exp] 218 / 5e-63 AT1G17120 785 / 0.0 cationic amino acid transporter 8 (.1) Potri.019G039600 [exp] 216 / 3e-62 AT3G03720 797 / 0.0 cationic amino acid transporter 4 (.1.2) Potri.008G017100 [exp] 213 / 2e-61 AT3G10600 778 / 0.0 cationic amino acid transporter 7 (.1) Potri.010G241000 [exp] 213 / 2e-61 AT3G10600 781 / 0.0 cationic amino acid transporter 7 (.1) Potri.019G039700 [exp] 204 / 7e-58 AT1G58030 924 / 0.0 cationic amino acid transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00324 [flax] [poplar] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Lus10042898 pacid=23181672 polypeptide=Lus10042898 locus=Lus10042898.g ID=Lus10042898.BGIv1.0 annot-version=v1.0 ATGGTAGGCCAGCAGAGAATTCGATCTGCTACCTCTTCTTCATGGCTTTCTCAGTTCTGGTCCTCGGCCCGTCGGTCAAAACCCTTGAATTCTCCTCATG ACACCAACCTCGCCAGGAATCCTCCCGACGGCCTTGTTCGTCGACTCGGCCTCTTCGACCTCATCCTCATCGGCGTCGGCGCTTCAATCGGCGCCGGAAT CTTCGTCGTCACTGGAACCGTCGCCCGCGATGCGGGACCTGGAGTTACGATTAGCTTCATACTGGCTGGACTCTCGTGTGTATTGAATGCACTTTGTTAT GCTGAGTTAGCCTCTCGATTGCCTGCTGTTGTTGGAGGAGCATATCTATACACGTATTCGGCTTTCAATGAAATCACAGCTTTTCTTGTTTTCGGGCAAT TGATGCTTGATTACCACATTGGAGCGGCTAGCATAGCTCGGAGTTTAGCAAGTTATGTAGCTACACTTTTGGAGCTCTCCCCTGTATTCAGAGGTCTTCC GAGTTGGGTTGGAAGTGGTGAAGAGTTTTTTGGTGGAACCGTGTCAATCAATCTATTAGCGCCAATTCTTCTCGCTCTTCTCACAATTATCTTATGTCGG GGTGTTGGGGAATCTTCCATTCTCAACTCAGTTATGACTGTCACAAAGGTTGTCATTGTCATAATTGTCATCTTTGTTGGTGCTTTCGAGGTTGATGTAG CTAATTGGACACCTTTTGCTCCCCATGGTGTTAAAGCAATATTTACTGGTGCAACTGTGGTGTTCTTTGCTTATGTTGGTTTTGATGCTGTTGCAAATTC TGCTGAAGAATCAAAGAAACCACAGAGGGACTTGCCACTAGGAATCATTGGAAGCCTTTTCATTTGTATTGTTTTGTACATTGCGGTCTGTTTAGTGATC ACTGGGATGGTGCCTTATAATCTCATTGGTGAAGATGCTCCTCTCGCTGAAGCTTTCAGGTCCAAAGGCTTGAAATTTGTCACTGTTTTAATCAGCATCG GTGCTGTTGCTGGATTGACAACAACACTTTTAGTTGGCCTTTATGTTCAGTCTCGACTATATCTTGGGCTTGGAAGGGATGGTCTTCTTCCTGCAGTTTT TGCCAAAGTGCATGCTACTCGCCACACTCCTATCCATTCTCAAGTCTGGGTTGGCATCGTAGCTGCTATTTTGGCGGGATTATTTAATGTGTCGATCCTT TCGCACATTCTTTCAGTTGGTTCATTGACAGGTTATTCCGTTGTCTCTGCATGTGTTGTGACCCTTCGTTGGAATGATAAGCAAGTTTCTTCAAGGTGGA CTACAGCCTGGCAGGAAGGTGTCATTTGCCTCGTCGTAGTAGCTGGTTGTGGCTTTGCTACAGGCGTCTGTTACCGCTACGATGTTTCATCTATTGTTAT GATCATTGCAGTGGTAATAGCTGTAGCCTCCATTGCTGTTCTGTGTTTCCGCCAAGCATACAGAGATCCTCCAGGGTTTTCTTGTCCTGGGGTCCCCGTT ATACCGGCTGTTAGCATCTTCTTCAACATCTTCTTGTTTGCCCAGTTACATGAAGAAGCGTGGGTAAGATTCGTGGTGCTGAGCCTTATCATGGTTGTAG TGTATGCATTGTATGGTCAGTATCATGCCAAGCCAGGTGTAGATGAGACTATTGTTTACCACAGGGCACCTGCTGAAGAAGCAACTTTCTAA
AA sequence Show only first row Show all	>Lus10042898 pacid=23181672 polypeptide=Lus10042898 locus=Lus10042898.g ID=Lus10042898.BGIv1.0 annot-version=v1.0 MVGQQRIRSATSSSWLSQFWSSARRSKPLNSPHDTNLARNPPDGLVRRLGLFDLILIGVGASIGAGIFVVTGTVARDAGPGVTISFILAGLSCVLNALCY AELASRLPAVVGGAYLYTYSAFNEITAFLVFGQLMLDYHIGAASIARSLASYVATLLELSPVFRGLPSWVGSGEEFFGGTVSINLLAPILLALLTIILCR GVGESSILNSVMTVTKVVIVIIVIFVGAFEVDVANWTPFAPHGVKAIFTGATVVFFAYVGFDAVANSAEESKKPQRDLPLGIIGSLFICIVLYIAVCLVI TGMVPYNLIGEDAPLAEAFRSKGLKFVTVLISIGAVAGLTTTLLVGLYVQSRLYLGLGRDGLLPAVFAKVHATRHTPIHSQVWVGIVAAILAGLFNVSIL SHILSVGSLTGYSVVSACVVTLRWNDKQVSSRWTTAWQEGVICLVVVAGCGFATGVCYRYDVSSIVMIIAVVIAVASIAVLCFRQAYRDPPGFSCPGVPV IPAVSIFFNIFLFAQLHEEAWVRFVVLSLIMVVVYALYGQYHAKPGVDETIVYHRAPAEEATF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G05940		CAT9	cationic amino acid transporte...		Lus10042898 [exp]	0	1
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Lus10000587 [exp]	2.0	0.8847
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10031104 [exp]	3.7	0.8358
AT1G21650		SECA2	Preprotein translocase SecA fa...		Lus10028560 [exp]	6.5	0.8647
AT1G60995			unknown protein		Lus10033791 [exp]	7.3	0.8818
AT3G07810			RNA-binding (RRM/RBD/RNP motif...		Lus10000537 [exp]	13.9	0.8197
AT1G10660			unknown protein		Lus10009991 [exp]	14.8	0.8056
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Lus10013374 [exp]	17.1	0.8587
AT4G19040		EDR2	ENHANCED DISEASE RESISTANCE 2 ...		Lus10012149 [exp]	19.0	0.8508
AT1G16270			Protein kinase superfamily pro...		Lus10031749 [exp]	19.7	0.8204
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10035481 [exp]	19.7	0.8485

Compare expression of checked genes

Lus10042898 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.