Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44840 132 / 7e-38 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT3G16770 105 / 2e-27 AP2_ERF RAP2.03, ATEBP, RAP2.3 ,ERF72 RELATED TO AP2 3, ETHYLENE RESPONSE FACTOR 72, ethylene-responsive element binding protein (.1) AT5G51190 102 / 1e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G47230 103 / 4e-26 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT4G17500 102 / 5e-26 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT2G33710 100 / 5e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT5G61600 101 / 6e-26 AP2_ERF ERF104 ethylene response factor 104 (.1) AT5G13330 99 / 5e-25 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G47220 99 / 7e-25 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT5G43410 95 / 1e-24 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029334 [exp] 124 / 3e-35 AT2G44840 152 / 1e-46 ethylene-responsive element binding factor 13 (.1) Lus10029333 [exp] 121 / 5e-34 AT2G44840 147 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10016210 [exp] 121 / 9e-34 AT2G44840 154 / 7e-47 ethylene-responsive element binding factor 13 (.1) Lus10016211 [exp] 120 / 1e-33 AT2G44840 158 / 2e-48 ethylene-responsive element binding factor 13 (.1) Lus10016212 [exp] 120 / 3e-33 AT2G44840 146 / 1e-43 ethylene-responsive element binding factor 13 (.1) Lus10016225 [exp] 120 / 3e-33 AT2G44840 154 / 4e-47 ethylene-responsive element binding factor 13 (.1) Lus10016209 [exp] 119 / 3e-33 AT2G44840 148 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10016224 [exp] 118 / 1e-32 AT2G44840 143 / 1e-42 ethylene-responsive element binding factor 13 (.1) Lus10016223 [exp] 117 / 2e-32 AT2G44840 144 / 1e-43 ethylene-responsive element binding factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G046600 [exp] 124 / 1e-34 AT2G44840 196 / 3e-63 ethylene-responsive element binding factor 13 (.1) Potri.014G047000 [exp] 122 / 1e-34 AT2G44840 160 / 2e-49 ethylene-responsive element binding factor 13 (.1) Potri.014G046700 [exp] 118 / 2e-32 AT2G44840 168 / 3e-52 ethylene-responsive element binding factor 13 (.1) Potri.014G046800 [exp] 108 / 9e-30 AT2G44840 130 / 7e-39 ethylene-responsive element binding factor 13 (.1) Potri.003G150700 [exp] 108 / 2e-28 AT4G17500 190 / 9e-60 ethylene responsive element binding factor 1 (.1) Potri.001G079900 [exp] 107 / 8e-28 AT4G17500 186 / 2e-58 ethylene responsive element binding factor 1 (.1) Potri.003G150800 [exp] 106 / 2e-27 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.004G051700 [exp] 103 / 3e-27 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.001G079800 [exp] 104 / 8e-27 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.003G080600 [exp] 104 / 3e-26 AT4G17490 159 / 3e-46 ethylene responsive element binding factor 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10042907 pacid=23181896 polypeptide=Lus10042907 locus=Lus10042907.g ID=Lus10042907.BGIv1.0 annot-version=v1.0 ATGCAACCAACATCTTTCAAAATCAAAAAAATGTATAGCGAAACCAATTTGACGACGACGGCGGTGGACTTGTCCCTCCTTGACTGGATATTGCTGGAAA CGGAGGAAGTTTCAACCACCGCCACTACTTCCTCTTGTTCCGAAACTTTTAGCTTCACCAATCTACTAGAGTTGCCAGTGCTACCGGCCGACAAAGACGA CATGGTGGCTGAGATCCCTCACGAGGTCTTAAGATGGAAAGAATATACACCCTACGACGTCGTTTCGGTTAAGGAAGAGCAGCATCATGTAGCCGAAACG GCGCCGCAGAAGAAGAAGGAGAGGACGAAGATGCTATACAGAGGCGTAAGGAGGAGGCCGTGGGGGAAGTATGCGGCTGAGATTCGGGACCCGAACAAGA AGGGAGCCAGGGTTTGGCTCGGCACCTACGACGCCCCTGAAGGAGCCGCCCTGGCTTACGACCGAGCCGCTTATCAGATTCGCGGCTCCAAGGCTAAGCT CAACTTCCCGCATTTGGTCGGGACCCGTGGCTTCCATAAGGTGGCGGCTCGGCCTTCACCCGGTCCTGCTGCGACTTCACTCCAAACGACAACCGTTGCG TCTTCCAAGCTGTCCGTGACGAGTAGCAGTCTGACTCCGTCCACTGAATTCGGCGGAGGGAATGTCGACGACTTCGGGATGTCGCTGCTTGCCTCCTTCA TGCTCAACAGCCAATCGTTTGTTTGA
AA sequence Show only first row Show all	>Lus10042907 pacid=23181896 polypeptide=Lus10042907 locus=Lus10042907.g ID=Lus10042907.BGIv1.0 annot-version=v1.0 MQPTSFKIKKMYSETNLTTTAVDLSLLDWILLETEEVSTTATTSSCSETFSFTNLLELPVLPADKDDMVAEIPHEVLRWKEYTPYDVVSVKEEQHHVAET APQKKKERTKMLYRGVRRRPWGKYAAEIRDPNKKGARVWLGTYDAPEGAALAYDRAAYQIRGSKAKLNFPHLVGTRGFHKVAARPSPGPAATSLQTTTVA SSKLSVTSSSLTPSTEFGGGNVDDFGMSLLASFMLNSQSFV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G44840	AP2_ERF	ATERF13, EREBP	ethylene-responsive element bi...		Lus10042907 [exp]	0	1
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10032406 [exp]	4.9	0.8915
AT1G58170			Disease resistance-responsive ...		Lus10017231 [exp]	5.5	0.8838
AT4G30030			Eukaryotic aspartyl protease f...		Lus10031450 [exp]	8.7	0.8727
					Lus10018591 [exp]	10.2	0.8103
AT3G23230	AP2_ERF	ERF98	Integrase-type DNA-binding sup...		Lus10011830 [exp]	11.7	0.8959
AT2G22790			unknown protein		Lus10011589 [exp]	12.6	0.7621
AT4G27290			S-locus lectin protein kinase ...		Lus10034815 [exp]	15.3	0.8565
AT2G24840	MADS	DIA, AGL61	DIANA, AGAMOUS-like 61 (.1)		Lus10030663 [exp]	15.5	0.8691
AT2G36780			UDP-Glycosyltransferase superf...		Lus10027739 [exp]	16.7	0.8559
AT4G29340		PRF4	profilin 4 (.1)		Lus10012935 [exp]	18.6	0.8505

Compare expression of checked genes

Lus10042907 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.