Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07580 127 / 4e-36 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G51190 114 / 2e-31 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G61590 112 / 7e-31 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G17490 113 / 2e-30 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT5G61600 110 / 8e-30 AP2_ERF ERF104 ethylene response factor 104 (.1) AT5G47230 111 / 1e-29 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT5G47220 105 / 6e-28 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT4G17500 97 / 3e-24 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT2G44840 94 / 1e-23 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT3G23230 92 / 1e-23 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032498 [exp] 355 / 3e-126 AT5G07580 144 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10032499 [exp] 115 / 1e-31 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1) Lus10042996 [exp] 114 / 4e-31 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10007841 [exp] 101 / 4e-26 AT5G47230 121 / 4e-33 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) Lus10016224 [exp] 99 / 1e-25 AT2G44840 143 / 1e-42 ethylene-responsive element binding factor 13 (.1) Lus10029333 [exp] 98 / 3e-25 AT2G44840 147 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10004752 [exp] 99 / 4e-25 AT5G07580 122 / 4e-34 Integrase-type DNA-binding superfamily protein (.1) Lus10029334 [exp] 97 / 4e-25 AT2G44840 152 / 1e-46 ethylene-responsive element binding factor 13 (.1) Lus10016212 [exp] 98 / 5e-25 AT2G44840 146 / 1e-43 ethylene-responsive element binding factor 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151000 [exp] 140 / 2e-41 AT5G07580 164 / 6e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079600 [exp] 139 / 6e-41 AT5G07580 145 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Potri.003G150800 [exp] 119 / 1e-32 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079800 [exp] 119 / 1e-32 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.003G080600 [exp] 115 / 6e-31 AT4G17490 159 / 3e-46 ethylene responsive element binding factor 6 (.1) Potri.001G154200 [exp] 115 / 9e-31 AT4G17490 159 / 2e-46 ethylene responsive element binding factor 6 (.1) Potri.014G046700 [exp] 96 / 2e-24 AT2G44840 168 / 3e-52 ethylene-responsive element binding factor 13 (.1) Potri.004G051700 [exp] 94 / 3e-24 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.010G072400 [exp] 94 / 3e-24 AT3G23230 85 / 1e-21 Integrase-type DNA-binding superfamily protein (.1) Potri.003G081200 [exp] 97 / 4e-24 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10042995 pacid=23168330 polypeptide=Lus10042995 locus=Lus10042995.g ID=Lus10042995.BGIv1.0 annot-version=v1.0 ATGTCAACTCTCGCAGAATCCACCGCTCTCCAGCTCATCAAACAGCATTTGCTAGATGACGAATCTTCGTCATCATCTTCTTCTCCCGCCCACCTTTTCA TCTCTAATTTCAACTCGCTTCCCTTCAAAATCAAAGAAGAAGAAGACCAATCGCGGTCCCCTGTTCGGAGCTCCGAATCGGAATTGGACTGTTTCTTCTT CCAACAACAAAGCCCCGAATTTCTTCGCGACCAGACGACGTCTTCCAAGTCCGCCGCTTCCGGTTCGCCAGTACCATCCGACCAGAAGGTCCAGGAAGAG GGTGGGAGGAAGTTCAGAGGCGTGAGGAAGAGGCCGTGGGGGGAATATGCGGCGGAGATCCGAGACCCGACCCGGAAGGGGAGCCGGGTCTGGCTGGGCA CTTTTGGCAGTGACGTGGACGCGGCGAGAGCCTATGACTTCGCGGAGTTTGAGATGAGGGGTAGGAAAGCGATACTTAATTTCCCTTTAGAGGCCGGCAA GTACGACCTCCCAGTTTGCACGGCCTCCCGGAAACGGAGGAAATTGAAGAACCAGGCAGCGGCCACGGCGCCGGTGAATTGGGAAGATGAGGACCAAAAG ACTTTGCTGTGGGCTTTGGAATAA
AA sequence Show only first row Show all	>Lus10042995 pacid=23168330 polypeptide=Lus10042995 locus=Lus10042995.g ID=Lus10042995.BGIv1.0 annot-version=v1.0 MSTLAESTALQLIKQHLLDDESSSSSSSPAHLFISNFNSLPFKIKEEEDQSRSPVRSSESELDCFFFQQQSPEFLRDQTTSSKSAASGSPVPSDQKVQEE GGRKFRGVRKRPWGEYAAEIRDPTRKGSRVWLGTFGSDVDAARAYDFAEFEMRGRKAILNFPLEAGKYDLPVCTASRKRRKLKNQAAATAPVNWEDEDQK TLLWALE

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Lus10042995 [exp]	0	1
AT5G19590			Protein of unknown function, D...		Lus10033088 [exp]	2.8	0.7903
AT1G66980		GDPDL2, SNC4	Glycerophosphodiester phosphod...		Lus10022359 [exp]	3.2	0.8223
AT5G55530			Calcium-dependent lipid-bindin...		Lus10043169 [exp]	4.0	0.8030
AT1G71080			RNA polymerase II transcriptio...		Lus10004071 [exp]	9.6	0.7369
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10012092 [exp]	10.4	0.8025
AT2G15580			RING/U-box superfamily protein...		Lus10001688 [exp]	12.8	0.7609
AT5G23090	CCAAT	NF-YB13	"nuclear factor Y, subunit B13...		Lus10000864 [exp]	15.4	0.7714
AT1G34050			Ankyrin repeat family protein ...		Lus10018757 [exp]	15.7	0.7733
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005141 [exp]	15.9	0.7605
					Lus10008178 [exp]	16.0	0.7366

Compare expression of checked genes

Lus10042995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.