Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51070 1244 / 0 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT5G50920 773 / 0 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 763 / 0 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT2G25140 363 / 2e-110 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT5G15450 363 / 2e-110 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT1G74310 325 / 6e-97 HOT1, ATHSP101 heat shock protein 101 (.1) AT4G14670 238 / 9e-68 CLPB2 casein lytic proteinase B2 (.1) AT3G45450 141 / 2e-36 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT4G30350 62 / 1e-09 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT5G57710 62 / 2e-09 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032514 [exp] 1679 / 0 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10043014 [exp] 848 / 0 AT5G51070 664 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10036017 [exp] 755 / 0 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 752 / 0 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032544 [exp] 717 / 0 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10043197 [exp] 406 / 1e-132 AT5G50920 802 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10041018 [exp] 350 / 2e-105 AT2G25140 1511 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Lus10040527 [exp] 325 / 2e-100 AT1G74310 906 / 0.0 heat shock protein 101 (.1) Lus10030705 [exp] 336 / 3e-100 AT5G15450 1619 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G112000 [exp] 1324 / 0 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G110000 [exp] 1280 / 0 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G105100 [exp] 769 / 0 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.012G105900 [exp] 768 / 0 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.005G197400 [exp] 343 / 8e-108 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.004G124800 [exp] 352 / 3e-106 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.006G262700 [exp] 351 / 1e-105 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.017G090600 [exp] 346 / 7e-104 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.015G057000 [exp] 329 / 4e-98 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.015G056900 [exp] 327 / 1e-97 AT1G74310 1566 / 0.0 heat shock protein 101 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [flax] [poplar] Clp_N Clp amino terminal domain, pathogenicity island component CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA) CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily) CL0671 [flax] [poplar] AAA_lid PF10431 [flax] [poplar] ClpB_D2-small C-terminal, D2-small domain, of ClpB protein
Representative CDS sequence Show only first row Show all	>Lus10043013 pacid=23167996 polypeptide=Lus10043013 locus=Lus10043013.g ID=Lus10043013.BGIv1.0 annot-version=v1.0 ATGAAACTTGTACTTGCTTCCTCTCCTCTTTCTCTCCATTCCCGTTCCCCTCCTTTGACTTCCTTCCACCACCATCCTTCTTCCCCTTCTCAATCCCTTC CTTCTTCTTCCTCTGCTCGTTGTTTCGGCGTTTCCATTTCTCATCATAATCACAACCACCTCTCTTCCAGAATCAGTTGCAGCCGTTCCAGAAAGAAAAG CCGTCGTACAGTCTTCACCGTTTCCGCCGTCTTCGAGAGGTTCACCGAGCGAGCTATCAAAAGTGTGATTTTCTCTCAGAGAGAAGCTCGAGCCTTGGGG AAGGATACTGTTGCCCCTCAGCACCTCTTGCTCGGTCTAATCGTTGAGGATCGTGACCTTGATGGATTCCTTGGGTCTGGAATCACTATCGACCGTGGTA GACAAGTTGTTAGGGAGATTTGGGTTAACGATGGTGATGATGCTGCGGATCATCATCCGACTTCTTCTTCTTCTACTTCTACTACGGATATGCCTTTCTC TGCTGCCACCAAACGTGTTTTCGAGGCTGCGGTTGAGTATTCCAGGAATATGAAGCATAAGTTCATTTCCCCTGAGCATATTGCTATTGGCTTGTTCACC GTTGATGATGGAAGTGCAGCTCAAGTTTGTCAAAGATTAGGGGTAAATTCAAATCACTTGGCAGCTGTGGCAATCACCAGATTGCAAGGAGAGCTAGCCA AGGATGGAAGAGGAGAACCATCTCTGTCCAAAGGGACAAGTGAGAAAGTTCTATCTAAAAGAGCTGTCGCTTTAAGATCCGCTGAAAAAGCTAAGGAGAA AAGTGCCCTGGCCCAATTCTGTGTAGATATTACCTCTCGAGCTGTTGAAGGGCGCATCGATCCAGTTATCGGACGAGAGAGTGAGATTCAAAGAGTTATT CAGATACTTTGCCGCAGAACCAAGAACAATCCGATTCTTCTTGGTGAAAGTGGAGTTGGGAAAACGGCCATTGCTGAAGGACTAGGAATGAAAATTGCTC AGGCTGAAGTGCCTGCTTCCCTCTTAGGAAAACGTGTCATCTCTTTGGATATTGGACTGTTAATTGCTGGTGCAAAGGAAAGGGGAGAACTTGAGTCACG TGTTACTTCATTAATCAAAGAGATACGAGAAGAAGGGAATGTAGTTCTCTTCATTGATGAAGTCCATACTCTTGTTGGGTCGGGTACAGTGGGACGAAAA AGCAAGGGAAATAGCCTTGACATTGCTAATCTACTGAAGCCAGCTCTTGGAAGGGGTGAATTACAGTGTATTGCATCCACAACTATGGATGAACACAGGT CACATATTGAAAGTGATAAAGCATTGGCAAGAAGATTTCAGCCTGTCATGATTAACGAACCGAGCCAGGAGGATGCTGTCAGGATATTGCTGGGTTTACG TCAAAAGTACGAGACCCATCATAACTGCAGATATACATTGGAAGCAATAAATGCAGCAGTTCATTTGTCAGCAAGATATATTGCTGATAGATTTCTGCCA GATAAAGCTATTGATCTCATTGACGAGGCAGGAAGCAGAGCTCGTATTGAAGCTTACAGGAAGAAGAAAGAACAGCAAACTGGTATACTGTCGAAGTCAC CAGATGATTATTGGCAGGAAATCAGAACTGTTCAGGCCATGCATCAAGTGGTTATTTCAAGTAAGCCAATCGCTGATGATAGTGAATCAAGCATTGATGA TGATTCTGGAGAACTCAAATCAGAGCCGCCTTCACCTTCTACATCCGATAATGCCGAACCCATGGTGGTGGGGCTTAATGACATTGCCTCTGTGGCTTCG CTCTGGTCCGGGATCCCTGTTCAGCAACTCACTGCTGATGAAAGAATCGCTCTCGTGGGTCTCGAGGAACAGCTTAGGAAAAGAGTCGTTGGCCAAGATG AGGCTGTTGGTGCTATATCTAGAGCAGTTAAGAGGTCTCGTTTCGGCCTCAAAGACCCCGATAGACCCATTGCAGCCTTACTTTTCTGTGGCCCTACTGG TGTTGGCAAAACGGAGCTAACTAAAGCACTGGCTGCATGCTACTTCGGAACCGAGTCCTCAATGCTCAGACTGGACATGAGTGAATATATGGAGCGACAC ACGGTGAGCAAACTAATTGGAGCACCTCCGGGTTATGTCGGTCATGGCGAGGGAGGCACGCTTACCGAAGCTATCAGAAGAAAACCTTTCACGTTGGTTC TACTTGACGAGATAGAGAAGGCCCATCCAGATATCTTCAATATCCTCCTCCAAGTATTTGAAGATGGCCACCTAACAGATTCTCAGGGCCGAAGAGTATC ATTCAAGAACGCTTTGATAGTTATGACCTCTAACATCGGATCGTCTGCCATCGCAAAAGGAGGGCGTACTTCCATTGGGTTTGTATCTGGAGCTGATCAA TCAATTACTTCATACGTGGGAATGAAGGAAATGGTAATGGAGGAACTCAAGTCATATTTCCGCCCTGAGTTGCTGAACAGAATAGACGAGCTAGTCGTAT TCCGCGCACTTGAGAAGACTCAGATGATGGAGATTGTGAACATGATGCTGGAAGAAGTGAAAGGAAGACTGATATCTCTTGGGATCGGGTTGGAGGTATC CGATTCAATCAAGGATTTGGTCTGCAAGCAAGGTTATGACCCTGCGTATGGTGCGCGGCCGCTCAGGCGAGCAGTCACCCAGGTAATAGAGAACCCATTG AGTGAAGCTTTACTTGGTGGAGGGTTCAAACCAGGCGACACAGCTCTGATCGATGTTGATGCAACCGGGAACCCTGTCGTTATAAATCGAGAGATGGAGC ATAGTATCCACTTAACAGACACTACACTCTCTAACTAG
AA sequence Show only first row Show all	>Lus10043013 pacid=23167996 polypeptide=Lus10043013 locus=Lus10043013.g ID=Lus10043013.BGIv1.0 annot-version=v1.0 MKLVLASSPLSLHSRSPPLTSFHHHPSSPSQSLPSSSSARCFGVSISHHNHNHLSSRISCSRSRKKSRRTVFTVSAVFERFTERAIKSVIFSQREARALG KDTVAPQHLLLGLIVEDRDLDGFLGSGITIDRGRQVVREIWVNDGDDAADHHPTSSSSTSTTDMPFSAATKRVFEAAVEYSRNMKHKFISPEHIAIGLFT VDDGSAAQVCQRLGVNSNHLAAVAITRLQGELAKDGRGEPSLSKGTSEKVLSKRAVALRSAEKAKEKSALAQFCVDITSRAVEGRIDPVIGRESEIQRVI QILCRRTKNNPILLGESGVGKTAIAEGLGMKIAQAEVPASLLGKRVISLDIGLLIAGAKERGELESRVTSLIKEIREEGNVVLFIDEVHTLVGSGTVGRK SKGNSLDIANLLKPALGRGELQCIASTTMDEHRSHIESDKALARRFQPVMINEPSQEDAVRILLGLRQKYETHHNCRYTLEAINAAVHLSARYIADRFLP DKAIDLIDEAGSRARIEAYRKKKEQQTGILSKSPDDYWQEIRTVQAMHQVVISSKPIADDSESSIDDDSGELKSEPPSPSTSDNAEPMVVGLNDIASVAS LWSGIPVQQLTADERIALVGLEEQLRKRVVGQDEAVGAISRAVKRSRFGLKDPDRPIAALLFCGPTGVGKTELTKALAACYFGTESSMLRLDMSEYMERH TVSKLIGAPPGYVGHGEGGTLTEAIRRKPFTLVLLDEIEKAHPDIFNILLQVFEDGHLTDSQGRRVSFKNALIVMTSNIGSSAIAKGGRTSIGFVSGADQ SITSYVGMKEMVMEELKSYFRPELLNRIDELVVFRALEKTQMMEIVNMMLEEVKGRLISLGIGLEVSDSIKDLVCKQGYDPAYGARPLRRAVTQVIENPL SEALLGGGFKPGDTALIDVDATGNPVVINREMEHSIHLTDTTLSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043013 [exp]	0	1
AT1G78420			RING/U-box superfamily protein...		Lus10005577 [exp]	1.0	0.9423
AT2G21120			Protein of unknown function (D...		Lus10026280 [exp]	1.4	0.9306
AT3G15355		UBC25 ,PFU1	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10018596 [exp]	2.2	0.9177
AT2G32970			unknown protein		Lus10035309 [exp]	4.5	0.9140
AT4G37440			unknown protein		Lus10001409 [exp]	4.7	0.9127
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10020962 [exp]	5.2	0.9225
AT4G34370		ATARI1	ARABIDOPSIS ARIADNE 1, ARIADNE...		Lus10011309 [exp]	7.0	0.8873
AT3G22260			Cysteine proteinases superfami...		Lus10010459 [exp]	7.6	0.8983
AT1G73980			Phosphoribulokinase / Uridine ...		Lus10009678 [exp]	8.8	0.9169
AT3G26890			unknown protein		Lus10031999 [exp]	9.4	0.9192

Compare expression of checked genes

Lus10043013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.