Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G51070 657 / 0 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT5G50920 367 / 7e-117 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 363 / 2e-115 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT5G15450 302 / 4e-92 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT2G25140 286 / 3e-86 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT1G74310 265 / 8e-79 HOT1, ATHSP101 heat shock protein 101 (.1) AT4G14670 235 / 7e-70 CLPB2 casein lytic proteinase B2 (.1) AT3G45450 158 / 1e-43 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043013 [exp] 937 / 0 AT5G51070 1288 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10032514 [exp] 934 / 0 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10036017 [exp] 354 / 3e-112 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 350 / 1e-110 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032544 [exp] 313 / 8e-99 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10043197 [exp] 287 / 1e-91 AT5G50920 802 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10030705 [exp] 291 / 4e-88 AT5G15450 1619 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Lus10041018 [exp] 276 / 2e-82 AT2G25140 1511 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Lus10013191 [exp] 275 / 8e-82 AT5G15450 1605 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G112000 [exp] 724 / 0 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G110000 [exp] 684 / 0 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.012G105900 [exp] 366 / 1e-116 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 364 / 6e-116 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.004G124800 [exp] 299 / 4e-91 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.006G262700 [exp] 288 / 5e-87 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.017G090600 [exp] 288 / 5e-87 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.015G056900 [exp] 264 / 2e-78 AT1G74310 1566 / 0.0 heat shock protein 101 (.1) Potri.015G057000 [exp] 261 / 3e-77 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.005G197400 [exp] 180 / 4e-50 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02861 [flax] [poplar] Clp_N Clp amino terminal domain, pathogenicity island component CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10043014 pacid=23168206 polypeptide=Lus10043014 locus=Lus10043014.g ID=Lus10043014.BGIv1.0 annot-version=v1.0 ATGAAAGTTGTACTTGCTTCCTCTCCTCTTTCTCTCCATTCCCGTTTCCCTCCTTTGACTTCCTTCCACCACCATCCTCCTCCTTCTTATTCTTCTTCTT CTTCTTCTTCTTCTTCTCCTCCCTGTTTCGGTGTTTCGATTTCTCATCATACTCACAACCACCTCTCTTCCAGAATCAGCTGCAGCCGTTCCAGAAAGAA AAGCCGTCGTACAGTCTTCACCGTTTCCGCCGTCTTCGAGAGGTTCACCGAGCGAGCTATCAAAAGTGTGATTTTCTCTCAGAGAGAAGCTCGAGCCTTG GGGAAGGATACTGTTGCCCCTCAGCACCTCTTGCTCGGTCTAATCGTGGAGGATCGTGACCCGGACGGCTTTCTCGGGTCTGGAATCACTATCGACCGTG CTAGAGACGTTGTTAGGGAAATTTGGGTTACCGATGGTGATGATGCTGCGGATCATCATCAGGCTTATTCTGCTACTTCTACTACAGATATGCCTTTCTC TGCAGCCACCAAACGAGTTTTCGAGGCTGCGGTTGAGTACTCCAGGAATATGAAGCATAAGTTCATTTCCCCTGAGCATATCGCTATTGGCTTGTTCACC GTTGATGATGGAAGTGCAGCTCAAGTTTGTCAAAGACTGGGGGTAAATGCAAATCACTTGGCAGCTGTGGCAATCACCAGATTGCAAGGAGAGCTGGCCA AGGATGGAAGAGGAGAACCATCTCTGTCCAAAGGGACAAGCGAGAAACCTCTATCTAAAAGAGCAGTGGCTTTAAGATCCTCTGAAAAAGCTAAGGAGAA AAGTGCCCTGGACCAATTCTGTGTAGATATTACCTCTCGAGCTGTTGAAGGACGCATCGATCCTGTTATCGGACGAGAGAGTGAAATTCAAAGAGTTGTT CAAATACTTTGCCGCCGAACTAAAAACAATCCGATTCTTCTTGGTGAAAGTGGAGTTGGGAAAACGGCCATTGCTGAAGGACTAGGAATGAAAATTGCTC AGGCGGAAGTTCCTGCTTCCCTCTTAGGAAAACGTGTAATGTCTTTGGATATTGGACTGTTAATTGCTGGTGCAAAGGAAAGGGGAGAACTAGAGTCACG TGTTACTACATTAATCAAAGAGATACTAGAAGAAGGCAATGTAGTTCTCTTCATTGATGAAGTCCATACTCTTGTTGGGTCGGGTACAGTGGGACGAAAA AGCAAGGGAAATAGCCTTGACATTGCTAATCTACTGAAGCCAGCTCTTGGAAGGGGTGAATTACAGTGTATTGCATCCACAACTATGGATGAACACAGGT TACATATTGAAAGTGATAAAGCATTGGCAAGAAGATTTCAGCCTGTCATGATTAATGAACCGAGCCAGGAGGATGCTGTCAGGATATTGCTGGGTTTACG TCAGAAGTACGAGATCCATCATAACTGCAGATATACATTGGAAGCAATAAATGCAGCAGTTCATTTGTCAGCAAGATATATTGCTGATAGATTTCTGCCA GATAAAGCTATTGATCTCATTGACGAGGCAGGAAGCAGAGCTCGTATTGAAGCTTACAGGAAGAAGAAAGAACAGCAAACTGGTTATTTCAAGTAA
AA sequence Show only first row Show all	>Lus10043014 pacid=23168206 polypeptide=Lus10043014 locus=Lus10043014.g ID=Lus10043014.BGIv1.0 annot-version=v1.0 MKVVLASSPLSLHSRFPPLTSFHHHPPPSYSSSSSSSSSPPCFGVSISHHTHNHLSSRISCSRSRKKSRRTVFTVSAVFERFTERAIKSVIFSQREARAL GKDTVAPQHLLLGLIVEDRDPDGFLGSGITIDRARDVVREIWVTDGDDAADHHQAYSATSTTDMPFSAATKRVFEAAVEYSRNMKHKFISPEHIAIGLFT VDDGSAAQVCQRLGVNANHLAAVAITRLQGELAKDGRGEPSLSKGTSEKPLSKRAVALRSSEKAKEKSALDQFCVDITSRAVEGRIDPVIGRESEIQRVV QILCRRTKNNPILLGESGVGKTAIAEGLGMKIAQAEVPASLLGKRVMSLDIGLLIAGAKERGELESRVTTLIKEILEEGNVVLFIDEVHTLVGSGTVGRK SKGNSLDIANLLKPALGRGELQCIASTTMDEHRLHIESDKALARRFQPVMINEPSQEDAVRILLGLRQKYEIHHNCRYTLEAINAAVHLSARYIADRFLP DKAIDLIDEAGSRARIEAYRKKKEQQTGYFK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G51070		SAG15, CLPD, ER...	SENESCENCE ASSOCIATED GENE 15,...		Lus10043014 [exp]	0	1
AT3G49490			unknown protein		Lus10015581 [exp]	1.4	0.8893
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Lus10019655 [exp]	2.4	0.8811
AT4G27020			unknown protein		Lus10032644 [exp]	3.0	0.8611
AT3G51130			unknown protein		Lus10014270 [exp]	4.2	0.8796
AT3G14205			Phosphoinositide phosphatase f...		Lus10037446 [exp]	6.0	0.8744
AT5G01990			Auxin efflux carrier family pr...		Lus10035610 [exp]	6.2	0.8305
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10034792 [exp]	8.4	0.8634
AT3G21180		ATACA9, ACA9	autoinhibited Ca\(2+\)-ATPase ...		Lus10033386 [exp]	9.2	0.8242
AT5G45190			Cyclin family protein (.1.2)		Lus10041213 [exp]	11.2	0.8626
AT3G04460		PEX12, ATPEX12,...	ABERRANT PEROXISOME MORPHOLOGY...		Lus10032777 [exp]	11.3	0.8219

Compare expression of checked genes

Lus10043014 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.