Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61800 529 / 0 ATGPT2, GPT2 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) AT5G54800 527 / 0 ATGPT1, GPT1 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) AT5G17630 307 / 2e-101 Nucleotide/sugar transporter family protein (.1) AT4G03950 262 / 8e-86 Nucleotide/sugar transporter family protein (.1) AT5G46110 228 / 1e-70 TPT, APE2 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) AT5G33320 197 / 6e-59 ARAPPT, CUE1 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) AT3G01550 194 / 6e-58 ATPPT2 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) AT1G77610 89 / 2e-19 EamA-like transporter family protein (.1) AT1G21870 87 / 6e-19 GONST5 golgi nucleotide sugar transporter 5 (.1) AT1G12500 67 / 7e-12 Nucleotide-sugar transporter family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011155 [exp] 674 / 0 AT5G54800 581 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Lus10018356 [exp] 509 / 0 AT1G61800 557 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10007653 [exp] 506 / 5e-180 AT1G61800 559 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Lus10019209 [exp] 290 / 1e-94 AT5G17630 480 / 2e-169 Nucleotide/sugar transporter family protein (.1) Lus10004312 [exp] 288 / 6e-94 AT5G17630 484 / 4e-171 Nucleotide/sugar transporter family protein (.1) Lus10037085 [exp] 224 / 4e-69 AT5G46110 530 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10015399 [exp] 223 / 1e-68 AT5G46110 642 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10013978 [exp] 222 / 2e-68 AT5G46110 641 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Lus10013083 [exp] 206 / 3e-62 AT3G01550 429 / 1e-149 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G420200 [exp] 553 / 0 AT5G54800 563 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.011G135900 [exp] 553 / 0 AT5G54800 583 / 0.0 ARABIDOPSIS GLUCOSE 6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 1, glucose 6-phosphate/phosphate translocator 1 (.1) Potri.004G019900 [exp] 542 / 0 AT1G61800 592 / 0.0 ARABIDOPSIS GLUCOSE-6-PHOSPHATE/PHOSPHATE TRANSLOCATOR 2, glucose-6-phosphate/phosphate translocator 2 (.1) Potri.013G071900 [exp] 302 / 4e-99 AT5G17630 526 / 0.0 Nucleotide/sugar transporter family protein (.1) Potri.008G095200 [exp] 228 / 1e-70 AT5G46110 454 / 5e-159 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.004G048900 [exp] 217 / 9e-68 AT5G46110 539 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.011G057800 [exp] 219 / 4e-67 AT5G46110 627 / 0.0 triose-phosphate ⁄ phosphate translocator, ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2, Glucose-6-phosphate/phosphate translocator-related (.1.2.3.4) Potri.001G347300 [exp] 209 / 2e-63 AT3G01550 411 / 1e-142 phosphoenolpyruvate (pep)/phosphate translocator 2 (.1) Potri.015G077900 [exp] 206 / 5e-62 AT5G33320 517 / 0.0 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1) Potri.012G082100 [exp] 200 / 6e-60 AT5G33320 458 / 1e-160 PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR, CAB UNDEREXPRESSED 1, ARABIDOPSIS THALIANA PHOSPHATE/PHOSPHOENOLPYRUVATE TRANSLOCATOR, Glucose-6-phosphate/phosphate translocator-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family CL0184 [flax] [poplar] DMT PF00892 [flax] [poplar] EamA EamA-like transporter family
Representative CDS sequence Show only first row Show all	>Lus10043060 pacid=23168325 polypeptide=Lus10043060 locus=Lus10043060.g ID=Lus10043060.BGIv1.0 annot-version=v1.0 ATGATCTGCACGTTAAAGCATTCTCCTTTAGCTCCCGCGTCCATCAATGGATCTGACATAGCTTGCCGCCGTCAACCCTTTTTGGCCGCCGGGAAAACCT TGTCATTACCGCCCAAGGGTTTATCTTCGAGTTCTGTACTTTCAGTCTCCAAGCCATTGCATCTGACCTCAATTGAGGCTAGGAAGTCGTCTCCATCGGT GATATGCAAGGCTTACGAAGCTGATCGATCCGAGCCTGTTGATTCCAGCGTGGAAGCTAAGTCGGAGGTTGCAAGGAAGGTAAAGATTGGGAGCTACTTC GCCACCTGGTGGGCTTTGAACGTTGTGTTCAACATCTACAACAAGAAGGTTTTGAACGCTTTTCCGTACCCGTGGCTTACCTCCACGCTTTCTCTAGCTT GTGGGTCTCTTATGATGTTGATCTCCTGGGGTACGAGGATTACCCCCACCCCCAAGACTGATTTTGAGTTCTGGAAGACTTTGCTCCCTGTTGCTATTGC CCATACAATTGGGCATGTTGCAGCAACAGTAAGTATGTCAAAGGTTGCAGTTTCGTTCACTCACATCATCAAGAGTGGTGAGCCAGCATTCAGTGTGTTA GTCTCCAGATTCCTATTAGGAGAGTCTTTCCCTGCCGGAGTTTACTTGTCGCTATTGCCAATTATTGGTGGTTGTGCTCTTTCTGCCGTCACCGAGCTCA ACTTCAACATGACTGGTTTTATGGGGGCCATGATCTCCAACTTGGCGTTTGTATTCAGGAACATATTTTCAAAGAAGGGGATGAAGGGGAAGTCTGTGAG CGGAATGAACTACTACGCTTGTCTCTCTATGTTGTCCCTAGTGATTCTAACTCCTTTCGCAATTGCTGTTGAGGGACCACAGATGTGGGCTGCTGGCTGG CAAACCGCCCTTTCTCAGATTGGACCTAATTTTGTCTGGTGGGTAGTCGCACAGAGTGTGTTCTATCATCTCTACAACCAGGTCTCATACATGTCGTTGG ATGAGATATCTCCCTTGACATTTAGTGTTGGAAACACCATGAAACGTATATCTGTGATAGTCTCCTCGATCATCATCTTCCACACGCCCGTCCGCCCTGT CAATGCCTTGGGAGCTGCCATTGCTATCTTCGGAACCTTCTTGTACTCCCAGGTAAATTCCGCATCTTCCATTCACAGATTGGGGAGTGTAGAAACATCA GTTGAAGTATACCCTCATCTCAAACTGTAG
AA sequence Show only first row Show all	>Lus10043060 pacid=23168325 polypeptide=Lus10043060 locus=Lus10043060.g ID=Lus10043060.BGIv1.0 annot-version=v1.0 MICTLKHSPLAPASINGSDIACRRQPFLAAGKTLSLPPKGLSSSSVLSVSKPLHLTSIEARKSSPSVICKAYEADRSEPVDSSVEAKSEVARKVKIGSYF ATWWALNVVFNIYNKKVLNAFPYPWLTSTLSLACGSLMMLISWGTRITPTPKTDFEFWKTLLPVAIAHTIGHVAATVSMSKVAVSFTHIIKSGEPAFSVL VSRFLLGESFPAGVYLSLLPIIGGCALSAVTELNFNMTGFMGAMISNLAFVFRNIFSKKGMKGKSVSGMNYYACLSMLSLVILTPFAIAVEGPQMWAAGW QTALSQIGPNFVWWVVAQSVFYHLYNQVSYMSLDEISPLTFSVGNTMKRISVIVSSIIIFHTPVRPVNALGAAIAIFGTFLYSQVNSASSIHRLGSVETS VEVYPHLKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Lus10043060 [exp]	0	1
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10008677 [exp]	2.4	0.9570
AT5G54800		ATGPT1, GPT1	ARABIDOPSIS GLUCOSE 6-PHOSPHAT...		Lus10011155 [exp]	2.8	0.9582
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10005670 [exp]	6.6	0.9378
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10014234 [exp]	7.1	0.9373
AT4G39230			NmrA-like negative transcripti...		Lus10042313 [exp]	10.7	0.9363
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10022680 [exp]	11.0	0.9419
AT4G01850		AtSAM2, SAM-2, ...	S-adenosylmethionine synthetas...		Lus10010070 [exp]	11.0	0.9316
AT2G01950		VH1, BRL2	VASCULAR HIGHWAY 1, BRI1-like ...		Lus10038726 [exp]	11.4	0.8932
AT1G18640		PSP	3-phosphoserine phosphatase (....		Lus10040521 [exp]	12.1	0.9259
AT1G61740			Sulfite exporter TauE/SafE fam...		Lus10020068 [exp]	12.2	0.9087

Compare expression of checked genes

Lus10043060 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.