Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20570 142 / 8e-43 AtENODL9 early nodulin-like protein 9 (.1) AT5G53870 115 / 7e-31 AtENODL1 early nodulin-like protein 1 (.1) AT2G25060 108 / 7e-30 AtENODL14 early nodulin-like protein 14 (.1) AT4G31840 108 / 1e-29 AtENODL15 early nodulin-like protein 15 (.1) AT4G30590 104 / 6e-28 AtENODL12 early nodulin-like protein 12 (.1) AT4G28365 98 / 2e-25 AtENODL3 early nodulin-like protein 3 (.1) AT4G27520 99 / 9e-25 AtENODL2 early nodulin-like protein 2 (.1) AT5G25090 96 / 1e-24 AtENODL13 early nodulin-like protein 13 (.1) AT5G57920 94 / 3e-24 AtENODL10 early nodulin-like protein 10 (.1) AT4G32490 89 / 1e-21 AtENODL4 early nodulin-like protein 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011158 [exp] 272 / 1e-93 AT3G20570 149 / 2e-45 early nodulin-like protein 9 (.1) Lus10003432 [exp] 110 / 3e-30 AT5G25090 167 / 5e-53 early nodulin-like protein 13 (.1) Lus10026880 [exp] 109 / 8e-30 AT5G25090 167 / 8e-53 early nodulin-like protein 13 (.1) Lus10022318 [exp] 103 / 2e-27 AT3G18590 146 / 4e-45 early nodulin-like protein 5 (.1) Lus10018617 [exp] 103 / 3e-27 AT4G28365 150 / 5e-46 early nodulin-like protein 3 (.1) Lus10039852 [exp] 102 / 4e-27 AT4G28365 150 / 8e-46 early nodulin-like protein 3 (.1) Lus10014880 [exp] 100 / 2e-26 AT3G18590 144 / 1e-43 early nodulin-like protein 5 (.1) Lus10032111 [exp] 98 / 2e-25 AT5G14345 147 / 1e-45 early nodulin-like protein 21 (.1) Lus10009196 [exp] 91 / 1e-21 AT5G53870 154 / 3e-44 early nodulin-like protein 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G419200 [exp] 163 / 1e-50 AT3G20570 153 / 1e-46 early nodulin-like protein 9 (.1) Potri.011G135400 [exp] 157 / 2e-48 AT3G20570 138 / 4e-41 early nodulin-like protein 9 (.1) Potri.011G117800 [exp] 113 / 4e-30 AT5G53870 158 / 3e-45 early nodulin-like protein 1 (.1) Potri.001G398800 [exp] 112 / 2e-29 AT4G28365 145 / 9e-42 early nodulin-like protein 3 (.1) Potri.006G184100 [exp] 105 / 9e-29 AT4G31840 174 / 5e-56 early nodulin-like protein 15 (.1) Potri.017G011200 [exp] 106 / 1e-28 AT4G32490 157 / 2e-48 early nodulin-like protein 4 (.1) Potri.006G264600 [exp] 100 / 1e-26 AT2G25060 184 / 9e-60 early nodulin-like protein 14 (.1) Potri.018G018200 [exp] 100 / 2e-26 AT2G25060 177 / 7e-57 early nodulin-like protein 14 (.1) Potri.001G338800 [exp] 92 / 2e-23 AT5G14345 145 / 6e-45 early nodulin-like protein 21 (.1) Potri.001G187700 [exp] 90 / 2e-22 AT1G79800 176 / 2e-56 early nodulin-like protein 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [flax] [poplar] CU_oxidase PF02298 [flax] [poplar] Cu_bind_like Plastocyanin-like domain
Representative CDS sequence Show only first row Show all	>Lus10043063 pacid=23168099 polypeptide=Lus10043063 locus=Lus10043063.g ID=Lus10043063.BGIv1.0 annot-version=v1.0 ATGGCAGCAACAGGCTCGAAATTGGCGATTGGTGTGCTCGGACTCTCCTGTCTTCTGCTCTTGTCCCTCCAGAAAGCCACTGCATTCCAGTTCACCGTCG GAGGTGCCAAAGGTTGGACTGTTCCTGATAATTCCTCTGCCTTGAACTACAATACCTGGGCCGAGAGCAGTCGCTTCTCCATTGGAGACTCCATCGTGTT TGTGTACGACCATGCTCACGACTCAGTGCTGGAAGTGAGCAAGGCCGACTACGACAGCTGCACCACGAGTTCCCCCGTCGGAACCTACACCGACGGCCAC ACGGTCTTCACTTTCAACCACTCGGGGGCACACTACTTCGTCAGTGGCAACAAAGACCACTGCCTCAAGAATCAGAAGGTCGTCATAGTAGTTTTGGCTG ACAGAAGCAGCAAACCACAGTCTCCCTCCACTCCACCTCCGTCACCAGCACCGGCCACTGACTACTCGCCTCCGGCACTCCAGCTCACCCCTGTCTCACC TCCTGAAGGGTATTCGCCACACAATGCAGCATCGTCTTCCATGGCGGCTATGGCAGGAGTAATTGCTTCTGCCGGAGCTTTCATCTCCTCTTCTCTGGTT TGCACATTCTGA
AA sequence Show only first row Show all	>Lus10043063 pacid=23168099 polypeptide=Lus10043063 locus=Lus10043063.g ID=Lus10043063.BGIv1.0 annot-version=v1.0 MAATGSKLAIGVLGLSCLLLLSLQKATAFQFTVGGAKGWTVPDNSSALNYNTWAESSRFSIGDSIVFVYDHAHDSVLEVSKADYDSCTTSSPVGTYTDGH TVFTFNHSGAHYFVSGNKDHCLKNQKVVIVVLADRSSKPQSPSTPPPSPAPATDYSPPALQLTPVSPPEGYSPHNAASSSMAAMAGVIASAGAFISSSLV CTF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10043063 [exp]	0	1
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Lus10011158 [exp]	1.4	0.9809
AT3G05620			Plant invertase/pectin methyle...		Lus10020677 [exp]	2.4	0.9676
AT3G05620			Plant invertase/pectin methyle...		Lus10029868 [exp]	3.5	0.9643
AT5G22870			Late embryogenesis abundant (L...		Lus10016161 [exp]	3.5	0.9650
AT5G22870			Late embryogenesis abundant (L...		Lus10021404 [exp]	5.0	0.9556
AT1G60360			RING/U-box superfamily protein...		Lus10028063 [exp]	5.3	0.9513
AT5G48060			C2 calcium/lipid-binding plant...		Lus10037479 [exp]	5.3	0.9308
AT1G14730			Cytochrome b561/ferric reducta...		Lus10031935 [exp]	6.0	0.9554
AT5G04890		RTM2	RESTRICTED TEV MOVEMENT 2, HSP...		Lus10028874 [exp]	10.8	0.9449
AT4G24250		ATMLO13, MLO13	MILDEW RESISTANCE LOCUS O 13, ...		Lus10042397 [exp]	12.3	0.9457

Compare expression of checked genes

Lus10043063 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.