Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54190 613 / 0 PORA protochlorophyllide oxidoreductase A (.1.2) AT4G27440 584 / 0 PORB protochlorophyllide oxidoreductase B (.1.2) AT1G03630 565 / 0 PORC ,POR C protochlorophyllide oxidoreductase C (.1.2) AT4G23430 119 / 2e-30 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G23420 113 / 4e-28 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G11410 101 / 4e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 101 / 5e-24 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G02540 99 / 5e-23 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G24050 98 / 1e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 94 / 1e-21 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032665 [exp] 566 / 0 AT5G54190 545 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Lus10018579 [exp] 544 / 0 AT5G54190 600 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Lus10039810 [exp] 543 / 0 AT5G54190 603 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Lus10024647 [exp] 119 / 2e-30 AT4G11410 461 / 1e-164 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035480 [exp] 116 / 2e-29 AT4G11410 444 / 5e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032280 [exp] 118 / 3e-29 AT4G11410 461 / 5e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10035479 [exp] 116 / 6e-29 AT4G11410 444 / 2e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10031101 [exp] 114 / 2e-28 AT4G23430 478 / 1e-171 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Lus10035481 [exp] 113 / 4e-28 AT4G23430 479 / 6e-172 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G122400 [exp] 622 / 0 AT5G54190 592 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Potri.001G403300 [exp] 596 / 0 AT5G54190 555 / 0.0 protochlorophyllide oxidoreductase A (.1.2) Potri.013G135500 [exp] 560 / 0 AT1G03630 604 / 0.0 protochlorophyllide oxidoreductase C (.1.2) Potri.012G143600 [exp] 122 / 4e-31 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.015G146600 [exp] 119 / 2e-30 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.006G083900 [exp] 118 / 4e-30 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.001G103000 [exp] 114 / 7e-29 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.003G128800 [exp] 112 / 6e-28 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.003G128700 [exp] 104 / 3e-25 AT4G11410 497 / 4e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G081102 [exp] 101 / 5e-24 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10043090 pacid=23168164 polypeptide=Lus10043090 locus=Lus10043090.g ID=Lus10043090.BGIv1.0 annot-version=v1.0 ATGGCTCTCTCCTCAGCCGCTTCACTGGTTTCCTCTGCTTTCGTCGCTCCCAAAGAGGTTAAATCGAGTGCTTCTTCTTTTGGAGTGTCACTCTACGACC ATGTCAAACCTGACTTCGCTTCTTCTGCACTCAGATGCAATAGGGAATCCAAATCCAGAGGTGGAGCATTGAGAGCTCAGACAACAACGGCCACTACCAC AGAAAACCCACCAATGAACAACAGCAGGGCAGCAGCGCCAGAAGCCAAAAAGACACTGCGAAAGGGCAACGTTGTGGTGACCGGTGCATCGTCGGGGCTC GGTCTGGCCACGGCCAAGGCTCTAGCCGATACGGGTAAATGGCACGTGATCATGGCCTGCAGGGACTTTCTCAAGGCGCAGCGGGCGGCCAAATCCGCCG GGATGGATAAAGAGAACTACACCGTGATGCATCTTGATCTGGCTTCCTTGGACAGTGTTCGGCAGTTCGTTCGTAACTTCCGGATGTCAGGGATGCCGCT CGATGTTCTGGTGTGCAATGCTGCTGTCTATCTCCCTACTGCTAAGGAACCCACGTTCACCGCTGAAGGGTTCGAGCTCAGTGTCGGGACGAACCATCTC GGACATTTCTTGCTGTCTAGATTGCTCGTTGATGATATGAAGCAGTCTGATTACCCTTCCAAGCGCCTCATCATTGTTGGGTCGATTACAGGGAATACAA ATACGCTAGCGGGAAACGTACCACCAAAGGCCAACCTAGGGGACATGAGGGGATTAGCAGGCGGGTTGAGCGCATCGAACAGCTCAGCCATGATCGACGG CGGAGATTTCGACGGTGCTAAGGCTTACAAGGACAGCAAAGTATGCAACATGCTGACGATGCAGGAGTTCCACAGGCGTTACCACGAGGAAACGGGCATC ACGTTCGCTTCCCTCTATCCGGGGTGCATTGCGACGACAGGGTTGTTCAGGGAGCACATTCCTCTGTTCAGGCTTCTCTTCCCTCCTTTCCAGAAGTACA TCACCAAGGGCTACGTGTCCGAGGACGAAGCTGGGAAAAGGCTTGCTCAGGTGGTCGCGGACCCGAGCTTGACAAAATCAGGGGTGTACTGGAGCTGGAA CAAGGAGTCGGCGAGCTTTCAGAACCAGTTGTCTCAGGAAGCTAGCGACGTTGACAAGGCACGTAAAGTTTGGGAGATCAGTGAGAAGCTCGTTGGTTTG GCTTAG
AA sequence Show only first row Show all	>Lus10043090 pacid=23168164 polypeptide=Lus10043090 locus=Lus10043090.g ID=Lus10043090.BGIv1.0 annot-version=v1.0 MALSSAASLVSSAFVAPKEVKSSASSFGVSLYDHVKPDFASSALRCNRESKSRGGALRAQTTTATTTENPPMNNSRAAAPEAKKTLRKGNVVVTGASSGL GLATAKALADTGKWHVIMACRDFLKAQRAAKSAGMDKENYTVMHLDLASLDSVRQFVRNFRMSGMPLDVLVCNAAVYLPTAKEPTFTAEGFELSVGTNHL GHFLLSRLLVDDMKQSDYPSKRLIIVGSITGNTNTLAGNVPPKANLGDMRGLAGGLSASNSSAMIDGGDFDGAKAYKDSKVCNMLTMQEFHRRYHEETGI TFASLYPGCIATTGLFREHIPLFRLLFPPFQKYITKGYVSEDEAGKRLAQVVADPSLTKSGVYWSWNKESASFQNQLSQEASDVDKARKVWEISEKLVGL A

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10043090 [exp]	0	1
AT5G54190		PORA	protochlorophyllide oxidoreduc...		Lus10032665 [exp]	1.0	0.9776
AT5G66550			Maf-like protein (.1)		Lus10040470 [exp]	2.4	0.9266
					Lus10032664 [exp]	2.4	0.9183
AT4G05180		PSII-Q, PSBQ, P...	photosystem II subunit Q-2 (.1...		Lus10006751 [exp]	3.5	0.9291
AT1G60550		ECHID, DHNS	enoyl-CoA hydratase/isomerase ...		Lus10013023 [exp]	4.6	0.9177
AT4G33670			NAD(P)-linked oxidoreductase s...		Lus10012456 [exp]	8.1	0.8797
AT3G23760			unknown protein		Lus10032527 [exp]	9.9	0.9162
AT1G08520		V157, ALB1, ALB...	PIGMENT DEFECTIVE EMBRYO 166, ...		Lus10019033 [exp]	11.7	0.9264
AT3G52150			RNA-binding (RRM/RBD/RNP motif...		Lus10041602 [exp]	12.3	0.9171
AT4G35920		MCA1	mid1-complementing activity 1,...		Lus10041875 [exp]	12.7	0.8723

Compare expression of checked genes

Lus10043090 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.