Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G47160 926 / 0 AtBOR1, BOR1 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) AT3G62270 917 / 0 HCO3- transporter family (.1) AT3G06450 862 / 0 HCO3- transporter family (.1.2) AT1G15460 688 / 0 ATBOR4 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) AT1G74810 667 / 0 BOR5 HCO3- transporter family (.1) AT5G25430 644 / 0 HCO3- transporter family (.1) AT4G32510 631 / 0 HCO3- transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032651 [exp] 1236 / 0 AT3G62270 1048 / 0.0 HCO3- transporter family (.1) Lus10038060 [exp] 900 / 0 AT3G62270 1155 / 0.0 HCO3- transporter family (.1) Lus10009995 [exp] 884 / 0 AT3G62270 1054 / 0.0 HCO3- transporter family (.1) Lus10008083 [exp] 673 / 0 AT1G15460 932 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10013116 [exp] 672 / 0 AT1G15460 932 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10019443 [exp] 621 / 0 AT1G15460 888 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10043299 [exp] 551 / 0 AT1G15460 749 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G100300 [exp] 1025 / 0 AT3G62270 1091 / 0.0 HCO3- transporter family (.1) Potri.002G191000 [exp] 913 / 0 AT2G47160 1152 / 0.0 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) Potri.014G116000 [exp] 907 / 0 AT3G62270 1113 / 0.0 HCO3- transporter family (.1) Potri.015G077600 [exp] 902 / 0 AT3G62270 1068 / 0.0 HCO3- transporter family (.1) Potri.012G081800 [exp] 899 / 0 AT3G62270 1067 / 0.0 HCO3- transporter family (.1) Potri.001G174500 [exp] 707 / 0 AT1G15460 959 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.003G059700 [exp] 697 / 0 AT1G15460 964 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.006G249800 [exp] 692 / 0 AT1G15460 924 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.018G031700 [exp] 684 / 0 AT1G15460 947 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.006G154700 [exp] 674 / 0 AT1G15460 894 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00955 [flax] [poplar] HCO3_cotransp HCO3- transporter family
Representative CDS sequence Show only first row Show all	>Lus10043101 pacid=23168047 polypeptide=Lus10043101 locus=Lus10043101.g ID=Lus10043101.BGIv1.0 annot-version=v1.0 ATGGAGGAAAGCTTTGTACCATTCCGTGGAATCAAGAACGACCTTCTGGGAAGATTGGCTTGCTACAAACAAGATTGGACTGGCGGTTTCAGCTCTGGGT TTAGTATTTTGGCACCCACCACCTACATATTCTTTGCCTCTGCAATCCCAGTGATTTCTTTTGGAGAACAATTGGAAAGAGAAACTGATGGAGCCCTTAC TGCAGTTCAGACCTTGGCTTCAACTGCTCTGTGTGGAATCATTCACTCCATCATTGGAGGGCAGCCATTGCTGATCCTTGGTGTTGCAGAACCCACGGTT ATCATGTACACTTTCATGTACAAGTTTGCTGCTGCTAGACCTGAACTGGGCTCCAAGTTCTTCCTTGCTTGGACTAGCTGGGTGTGTGTGTGGACTGCTA TCTTGCTCTTCCTACTCTCCATCTTAGGAGCATGCTCCATTATCAATAGGTTTACCCGTCTTGCCGGAGAGTTGTTTGGCCTTCTTATTGCCATGCTTTT CATGCAGGAGGCTATCAAGAAAGGCAAGGTCTTGGCGATATGGTTCAGGCATGTCCCATCAGATGTTCGACCCTTTGCAGCAAGGACCAGTTTCGTCATT GTTTTGCTAAAGCTTGAATATTTCTTTCTTGACACAGGCTGGCTGAGGGGCTTCCTAGCAGATTACGGCGTACCGTTCATGGTTCTCCTATGGACTGGAC TTTCCTACATACCAACTGGAACTACACCAAATGGTATTCCAAGACGTCTCTTTAGCCCGAACCCATGGTCATCTGGTGCCTACAAGAACTGGACTGTGAT AACGGAGATGCTAGATGTACCAGTCATTTACATAATCGGAGCATTCATCCCAGCAACGATGATAGCAGTGCTCTATTACTTTGATCACAGCGTAGCATCT CAATTGGCTCAGCAGAAAGAATTTAACTTGAGGAAACCACCTTCTTTCCACTATGATTTACTTCTTCTAGGATTCATGGTCATACTTTGCGGTCTGCTTG GAATTCCTCCGGCTAATGGAGTTATCCCACAGTCTCCAATGCATACCAAGAGTTTGGCCACTTTGAAGCATCAGTTATTGCGTAGAAAGCTTTTGGCTGC TGCACGGAAGCGAATGAGCGAGAATGCAAGCTTGGGACAAGTGTATGCAAGTATGAAAGAAGCTTACCAACATGCACAGAGCCCATGTGTCCCTCCGGGA TCTTCTCCTCCGGGTTTGAAGGAACTGAAAGACTCAACTCTTCAGATGGCTGCAAGACTTGGAAGCTTCAATGCTCCAGTCGACGAGACAATATTCGACA TTGAGAAGGAGATTGATAACCTCTTGCCAGTCGAGGTGAAAGAACAGCGGCTCAGTAACTTGCTTCAGTCTGTAATGGTAGGCGGATGTGTTGGGGCCAT GCCTTTCATTAAAAAGATCCCAACTTCCGTGCTATGGGGTTATTTTGCATTCATGGCCATCGAAAGCTTGCCGGGCAACCAGTTCTGGGAAAGGATCTTG CTCATCTTCACAGCTCCCAGCAGGAGACACAAAGTGTTGGAAGAGTATCATGCCACTTTCCTGGAAACGGTACCTTTCAAGACTATCACAATGTTCACAC TGTTTCAAGCTGGATATCTGCTGGTATGCTTTGGCATCACATGGATCCCAATCGCCGGCGTTCTTTTCCCTCTAATGATCATGCTTCTGGTTCCCGTGAG ACAATACATGCTGCCCCAGTTCTTCAAGGGTGCACACCTTCAGGACTTGGATGCTGCGGAGTACGAAGAGATCCCTGCGATGCCATTCAACTCAACGACA GATATAGAGATGCTGAGCCGGAGAGCTTCATTCAATGATGACAGTGAGATGTTGGATGGGATGATCACTCGAAGCAGAGGGGAGATAAAACGGGCATTCA GCGGACCAATGTTGTTAACAACAGCATCGGGGGAAGAATTGATGAGCATTGAGAGTCCTCAAGTTTCGGATAAGGGAAATGTGACTCGTTACAGAGGGGA TCTGAGCCCTCGCCAAGGGGGTAAAGGAGGAGGAGGAGGATCATTTACATCAAGGCCATCTAACTTGGGGAAGACAGGGTAG
AA sequence Show only first row Show all	>Lus10043101 pacid=23168047 polypeptide=Lus10043101 locus=Lus10043101.g ID=Lus10043101.BGIv1.0 annot-version=v1.0 MEESFVPFRGIKNDLLGRLACYKQDWTGGFSSGFSILAPTTYIFFASAIPVISFGEQLERETDGALTAVQTLASTALCGIIHSIIGGQPLLILGVAEPTV IMYTFMYKFAAARPELGSKFFLAWTSWVCVWTAILLFLLSILGACSIINRFTRLAGELFGLLIAMLFMQEAIKKGKVLAIWFRHVPSDVRPFAARTSFVI VLLKLEYFFLDTGWLRGFLADYGVPFMVLLWTGLSYIPTGTTPNGIPRRLFSPNPWSSGAYKNWTVITEMLDVPVIYIIGAFIPATMIAVLYYFDHSVAS QLAQQKEFNLRKPPSFHYDLLLLGFMVILCGLLGIPPANGVIPQSPMHTKSLATLKHQLLRRKLLAAARKRMSENASLGQVYASMKEAYQHAQSPCVPPG SSPPGLKELKDSTLQMAARLGSFNAPVDETIFDIEKEIDNLLPVEVKEQRLSNLLQSVMVGGCVGAMPFIKKIPTSVLWGYFAFMAIESLPGNQFWERIL LIFTAPSRRHKVLEEYHATFLETVPFKTITMFTLFQAGYLLVCFGITWIPIAGVLFPLMIMLLVPVRQYMLPQFFKGAHLQDLDAAEYEEIPAMPFNSTT DIEMLSRRASFNDDSEMLDGMITRSRGEIKRAFSGPMLLTTASGEELMSIESPQVSDKGNVTRYRGDLSPRQGGKGGGGGSFTSRPSNLGKTG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G47160		AtBOR1, BOR1	REQUIRES HIGH BORON 1, HCO3- t...		Lus10043101 [exp]	0	1
AT3G62270			HCO3- transporter family (.1)		Lus10032651 [exp]	1.0	0.8687
AT5G15050			Core-2/I-branching beta-1,6-N-...		Lus10001076 [exp]	1.4	0.8621
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10021977 [exp]	2.2	0.8058
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10037147 [exp]	5.2	0.8587
AT5G32470			Haem oxygenase-like, multi-hel...		Lus10042514 [exp]	5.7	0.7706
AT1G05280			Protein of unknown function (D...		Lus10027153 [exp]	7.3	0.7204
AT1G14040			EXS (ERD1/XPR1/SYG1) family pr...		Lus10036779 [exp]	10.0	0.8151
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10014369 [exp]	11.0	0.8001
AT5G37710			alpha/beta-Hydrolases superfam...		Lus10000444 [exp]	16.9	0.7797
AT5G03720	HSF	AT-HSFA3	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10023866 [exp]	17.2	0.7938

Compare expression of checked genes

Lus10043101 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.