Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04730 926 / 0 CTF18 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G22010 75 / 3e-13 ATRFC1 replication factor C 1, replication factor C1 (.1) AT1G21690 59 / 9e-09 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G77470 49 / 1e-05 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) AT1G63160 47 / 3e-05 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) AT3G16290 44 / 0.0007 EMB2083 embryo defective 2083, AAA-type ATPase family protein (.1) AT3G28600 43 / 0.001 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032615 [exp] 371 / 1e-119 AT1G04730 237 / 3e-70 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013372 [exp] 100 / 3e-21 AT5G22010 1128 / 0.0 replication factor C 1, replication factor C1 (.1) Lus10028543 [exp] 57 / 3e-08 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10024504 [exp] 49 / 1e-05 AT1G63160 615 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10008003 [exp] 49 / 1e-05 AT1G63160 605 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10018144 [exp] 47 / 8e-05 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10025689 [exp] 47 / 8e-05 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10008835 [exp] 45 / 0.0003 AT4G27680 649 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10022361 [exp] 44 / 0.0005 AT4G27680 632 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G050300 [exp] 1078 / 0 AT1G04730 1058 / 0.0 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G213900 [exp] 82 / 2e-15 AT5G22010 1117 / 0.0 replication factor C 1, replication factor C1 (.1) Potri.002G084700 [exp] 65 / 3e-10 AT1G77620 634 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G181300 [exp] 55 / 1e-07 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G081200 [exp] 47 / 4e-05 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.003G123200 [exp] 45 / 0.0002 AT1G63160 587 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Potri.015G007700 [exp] 45 / 0.0003 AT4G27680 615 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G080600 [exp] 45 / 0.0003 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.013G151600 [exp] 44 / 0.0007 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.006G125500 [exp] 43 / 0.001 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10043134 pacid=23168021 polypeptide=Lus10043134 locus=Lus10043134.g ID=Lus10043134.BGIv1.0 annot-version=v1.0 ATGGACTTTGATATTCCTGAAGCAGACGAGCTCGAATGGCTCGAAGCCAATTCTCTTTATCCCGAAGAAGAAAACGAGCTTGTACCCGCCGTTCCCTCTG ACGAAGAACCACCGCAATCACCCCCTGAGTCGCTGACTGTCGGTTCCAAATCTGGCCAGAAGCGCGGCCTTTCCCATTGTCTGGATTCTTCCAATCTCGG CGAAGGAGAAGGAACCTCTGACGTCAAAATTGACCAGAAGAAGAGTAAAATCGATGACGACGACGACTGGCTCCGGTACTCTCCTACGCGAGACAGCAAC GGGACTTTTGGTGCTCCGATGGAAGAAGATCCAGTGGTGGAGGTGGAGGAGAGGATTGTTTCAAAATTCATTTCTCAGATAGAAGGGGATTTTATTCCAG TTACAGCGCCTGGCGGCGAAGATAGGGTTTATGCGAAGTTATGTACAGTTCAAACGGATGCGAGATCGCATAAATTGGACTTGGAATCAAAATCGGGCGG TCTTTTAGTCGATCCTATCAACGTTCTTTTTGAAAGGGCAGAGCAATTGGCTTTCAACAAGGCATTGAAAGCTAGTACTGAAGTTCAGACCGACGATGTT GTGCCTCAAACAGGCGTGGTTTCTGAAAACCTTTGGGTAGATAAATATGCTCCAAAGTCGTTCACTGAGCTACTGAGTGATGAGCAAACAAATAGGGAGG TCCTGCTGTGGTTGAAACAATGGGATTCTTGTGTTTTTGGATCTGAAATTATAAGTACGTCAGATGAGGTTCTGTCTGCTTTGAGGCGTCACTCAACTGT TCCTCAACACCAGAAAGTTTCAGATACAGCTTTCACGAGGAAAACCAGAGGGTATAAAAGGGGCAATGGTAATGATAGACGGTTCGATCGGTCGTCAGAT TTTGAAAATGACAATTCTAAACAAACGCAGGACGCCGCAAACAAGAAAACAAGGCCTAGCGTTCCGCCGGAACAAAAGATTCTCTTACTCTGTGGCCCTC CAGGACTTGGAAAGACGACTCTTGCACATGTAGCTGCTGATCATTGTGGATATCGAGTTGTGGAGGTAAATGCAAGTGATGACCGGTCATCCTCTTCCAT TGAAGCCAAAATCCTGGATGTGGTCCAGATGAACTCCGTGACAGCAGATTCGAGACCCAAGTGTTTGGTTATTGATGAGATAGATGGAGCTCTTGGTGAT GGCAAAGGTGCTGTGGATGCTATTCTGAAGATGGTTTCATCTGATAAGAAGGCAGAGACTGGGAATGAAACCCTTGCAAAAGGAGAGCTGTCTGGAAGAG CATTGTCGAAAAAGGGACGTAAAGCGGCATCGCTGTCAAGACCTGTTATTTGCATATGCAATGATTTATATGCTCCAGCCTTGAGACCATTGCGTCAGGT AGCAAAGGTTCATATATTTGTTCAACCTACTGTCAGCCGTGTAGTTAACAGGCTCAAGTATATCTGTAACAAGGAGGGAATGAAGACAAACTCCATTGCT CTTGTTACACTTGCGGAGTACACTGAATGTGATATACGGTCATGCTTGAATACGCTTCAGTTTCTTAACGGGAAGGGGAAGGCGCTTAATGTGTTGGAGA TTGGCTCACAGGTGGTGGGTCGAAAGGATCAGTCGAAAGGTGTTTTTGATATTTGGAAAGAGATATTCCAAAGGAGAAAATTTAAGGGGGAAAGGAAGTA TGAGAGCAGTTACGCCAATAAGTCTGATGACTTTGATTATCTGCATTCCCGGCTATCCAATCGTGGAGACTACGACATGATTATGGACGGTATTCACGAA AACTTCTTGCATCTCCAATATCATGATCCAGTGATGCAAAAGACGGTCAAGTGCATGAATAGTCTTGGTGTGTTTGATCTAGTACAACAATGCATTTGGC GAACAATGCAAATGCCTCTCTACGTTTATCAGTCTCCTCTTGCAATTACTGTACACCACATTGTGGCACAAATTCAAAGACCAAATATAGAATGGCCAAA ATCATATCAAAGGCACCGAACAATGTTAGCAGAGAAACTGGAATTGCTGAAGGCTTGGCATAACAAAATGCCACCGCATATATTCCGGCATTTATCCACC AAGGCCTTTGCTGAAGATTCTGTATCTTCTTTGTTGCATATTCTATCACCCTCAACCATAAGACCGGTAGCGTTGCACTTATACACTGATAAGGAAAAGA ACGACATGGACCAGTTAGTCAGCAGGATGGTGTCTTATTCTGTAACATATAAGACCGTAAAGCCCAATCCTTTCTCCAGTAACCCAGATCATCATGCAGC TTCAGATGTACCAACGCTGATTTTCGATCCTCCCATCACAGAGTTCATCAGCTTCAAGGGCTATCCATGTACTCATAATTCACTTCCCTTGGCTATGAAG CAAGTTTTGGCCCACGAAGTTGAGAAGCGAAGGATTTTGGAAGTGAGCAAATTTGCAAATGCAAATGAAGTGTGCAATGAAGGGAATTTCGACTCAATGG GAAGGAAGGACGGCAAAGAAATCTGCAGCAGTTCAAAGTACGCAGGACCATTCATTGCCAATAAGGAAAAGGTAAAGAAAGGAGTAATAGGTCCGACAAC AACGGCAGTTTCATCAAATGTGGAAGCTACTAAGAGTAGTATGCCTAATGTGAAGCTAATTACTTCTGAGCTTCCCAAGAAGAAGTCCAGTGGTGCTAGC AGCTTCTTTGACAGGTTCAGGAAAGCTAGTGGCAGAGCTTCTCGGAATGCAGACAGTAATGACCACAATGCAGCTACATTGGAAAGAGACTCACGACCTG TCTTGTTTAAATATAACGAGTATAGTGATTGCGAACCTGATGATGTCATCCCTCGTGTTGAACTAGAAGGCTTGATGGAGCTTGTGCCACCAAGTGGACT CGCGGCCCCGGTGCCACTAAGTGCCCTTGCGGTATCATCCCAAGTCAACTAG
AA sequence Show only first row Show all	>Lus10043134 pacid=23168021 polypeptide=Lus10043134 locus=Lus10043134.g ID=Lus10043134.BGIv1.0 annot-version=v1.0 MDFDIPEADELEWLEANSLYPEEENELVPAVPSDEEPPQSPPESLTVGSKSGQKRGLSHCLDSSNLGEGEGTSDVKIDQKKSKIDDDDDWLRYSPTRDSN GTFGAPMEEDPVVEVEERIVSKFISQIEGDFIPVTAPGGEDRVYAKLCTVQTDARSHKLDLESKSGGLLVDPINVLFERAEQLAFNKALKASTEVQTDDV VPQTGVVSENLWVDKYAPKSFTELLSDEQTNREVLLWLKQWDSCVFGSEIISTSDEVLSALRRHSTVPQHQKVSDTAFTRKTRGYKRGNGNDRRFDRSSD FENDNSKQTQDAANKKTRPSVPPEQKILLLCGPPGLGKTTLAHVAADHCGYRVVEVNASDDRSSSSIEAKILDVVQMNSVTADSRPKCLVIDEIDGALGD GKGAVDAILKMVSSDKKAETGNETLAKGELSGRALSKKGRKAASLSRPVICICNDLYAPALRPLRQVAKVHIFVQPTVSRVVNRLKYICNKEGMKTNSIA LVTLAEYTECDIRSCLNTLQFLNGKGKALNVLEIGSQVVGRKDQSKGVFDIWKEIFQRRKFKGERKYESSYANKSDDFDYLHSRLSNRGDYDMIMDGIHE NFLHLQYHDPVMQKTVKCMNSLGVFDLVQQCIWRTMQMPLYVYQSPLAITVHHIVAQIQRPNIEWPKSYQRHRTMLAEKLELLKAWHNKMPPHIFRHLST KAFAEDSVSSLLHILSPSTIRPVALHLYTDKEKNDMDQLVSRMVSYSVTYKTVKPNPFSSNPDHHAASDVPTLIFDPPITEFISFKGYPCTHNSLPLAMK QVLAHEVEKRRILEVSKFANANEVCNEGNFDSMGRKDGKEICSSSKYAGPFIANKEKVKKGVIGPTTTAVSSNVEATKSSMPNVKLITSELPKKKSSGAS SFFDRFRKASGRASRNADSNDHNAATLERDSRPVLFKYNEYSDCEPDDVIPRVELEGLMELVPPSGLAAPVPLSALAVSSQVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10043134 [exp]	0	1
AT5G67100		ICU2	INCURVATA2, DNA-directed DNA p...		Lus10009366 [exp]	1.4	0.9657
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10040017 [exp]	3.0	0.9680
AT3G48160	E2F_DP	E2FE, E2L3, DEL...	E2F-LIKE 3, DP-E2F-like 1 (.1....		Lus10042941 [exp]	4.0	0.9565
AT3G42660			transducin family protein / WD...		Lus10034648 [exp]	5.5	0.9596
AT5G52910		ATIM	timeless family protein (.1)		Lus10038831 [exp]	5.7	0.9614
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Lus10002427 [exp]	5.7	0.9632
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10020576 [exp]	6.6	0.9555
AT1G65470		NFB2, FAS1	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10004453 [exp]	6.7	0.9564
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Lus10018715 [exp]	9.5	0.9559
AT2G07690		MCM5	MINICHROMOSOME MAINTENANCE 5, ...		Lus10019592 [exp]	9.5	0.9575

Compare expression of checked genes

Lus10043134 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.