Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28360 91 / 2e-22 AP2_ERF AtERF12 ERF domain protein 12 (.1) AT5G44210 87 / 3e-21 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) AT1G28370 86 / 8e-21 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT3G20310 87 / 2e-20 AP2_ERF ATERF7, ATERF-7 ethylene response factor 7 (.1) AT3G15210 86 / 2e-20 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G50640 82 / 6e-19 AP2_ERF ATERF3 ethylene responsive element binding factor 3 (.1) AT4G11140 81 / 3e-18 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT4G34410 79 / 2e-17 AP2_ERF RRTF1 (Redox Responsive Transcription Factor1 ), ERF109 redox responsive transcription factor 1 (.1) AT1G03800 78 / 2e-17 AP2_ERF AtERF10 ARABIDOPSIS THALIANA RF DOMAIN PROTEIN 10, ERF domain protein 10 (.1) AT2G33710 78 / 2e-17 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033664 [exp] 85 / 4e-20 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10039857 [exp] 84 / 2e-19 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10029987 [exp] 81 / 3e-19 AT3G15210 115 / 7e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10014054 [exp] 83 / 4e-19 AT4G34410 139 / 4e-40 redox responsive transcription factor 1 (.1) Lus10035329 [exp] 84 / 5e-19 AT3G15210 115 / 8e-31 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10031526 [exp] 81 / 1e-18 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10017550 [exp] 78 / 6e-17 AT4G23750 172 / 2e-51 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) Lus10015415 [exp] 77 / 8e-17 AT5G44210 134 / 8e-39 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10008214 [exp] 77 / 1e-16 AT1G72360 154 / 2e-45 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 1, ethylene response factor 73, Integrase-type DNA-binding superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G056900 [exp] 90 / 2e-22 AT1G28360 149 / 6e-46 ERF domain protein 12 (.1) Potri.004G047500 [exp] 90 / 2e-22 AT1G28360 157 / 3e-49 ERF domain protein 12 (.1) Potri.004G047600 [exp] 89 / 3e-21 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.017G013700 [exp] 86 / 2e-20 AT5G44210 103 / 2e-27 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.009G101900 [exp] 83 / 6e-19 AT4G34410 119 / 2e-32 redox responsive transcription factor 1 (.1) Potri.007G138100 [exp] 80 / 4e-18 AT5G44210 149 / 3e-45 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.004G141200 [exp] 81 / 5e-18 AT4G34410 130 / 2e-36 redox responsive transcription factor 1 (.1) Potri.001G356100 [exp] 79 / 5e-18 AT1G50640 108 / 7e-29 ethylene responsive element binding factor 3 (.1) Potri.005G219600 [exp] 78 / 6e-18 AT1G50640 85 / 2e-20 ethylene responsive element binding factor 3 (.1) Potri.002G043300 [exp] 78 / 8e-18 AT5G44210 88 / 8e-22 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10043182 pacid=23168074 polypeptide=Lus10043182 locus=Lus10043182.g ID=Lus10043182.BGIv1.0 annot-version=v1.0 ATGGCAAGAGGTCGGCCCACGGAAGCACCACCACCAGCAGCTCTGGCGGCTGAGCCCAAATACAGAGGAGTTCGGAAGAGACCCTGGGGCAGATACGCAG CCGAGATCCGAGACCCTTCCAAGAAGACCAGAGTTTGGCTTGGTACCTTCGATTCCCCTGAAGAGGCAGCTCGAGCCTACGATGCCGCCGCAGTAGCTCT CCGCGGTCCCAGAGCGAAACCTAATTTCCCGTTTCCTTGCTCTTCCCATCGGCCTATTCCGTCTCCTTTCCATGGGAACCCGATCCGTCACGTTGATTTC CGTTTGATTGAAAAATCTCGGATGATGCCTGCATCTAGCAGCTTGAGCAGTACGGTGGAATCTTCAAGCGGTCCTCGCTCGAGGGAACAAGCTGGTGGTG GTATTTGTGTTTCTTTGACGGCGTCGTCGTCAGGCAGAAAGCGGAGACAGAGTAAGGATCGGCGTTCGCCGGCGGGAGATTTTCAGAGCGATTGCGATTC TTCTTCGTCGGTGGTAGACGATGGAGAAAGGGCGGTGGCGGCGGAGGATGCGGTGTCGGCTATGACTCGGGAAGCGTTGTTGTTGTTCGATCTCAATTTT CCACCACCACCAATGGATGAGTTGGCGTTCGGCAGAGAGGATCCTCTACGGCCGACTGATTTGTGCCTCTGA
AA sequence Show only first row Show all	>Lus10043182 pacid=23168074 polypeptide=Lus10043182 locus=Lus10043182.g ID=Lus10043182.BGIv1.0 annot-version=v1.0 MARGRPTEAPPPAALAAEPKYRGVRKRPWGRYAAEIRDPSKKTRVWLGTFDSPEEAARAYDAAAVALRGPRAKPNFPFPCSSHRPIPSPFHGNPIRHVDF RLIEKSRMMPASSSLSSTVESSSGPRSREQAGGGICVSLTASSSGRKRRQSKDRRSPAGDFQSDCDSSSSVVDDGERAVAAEDAVSAMTREALLLFDLNF PPPPMDELAFGREDPLRPTDLCL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G20310	AP2_ERF	ATERF7, ATERF-7	ethylene response factor 7 (.1...		Lus10043182 [exp]	0	1
AT3G03280			unknown protein		Lus10013490 [exp]	1.4	0.9595
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010238 [exp]	3.0	0.9452
AT1G70420			Protein of unknown function (D...		Lus10013011 [exp]	4.2	0.9375
AT2G40140	C3HZnF	ATSZF2, CZF1, Z...	\(SALT-INDUCIBLE ZINC FINGER 2...		Lus10028970 [exp]	4.5	0.9458
AT1G27730	C2H2ZnF	ZAT10, STZ	salt tolerance zinc finger (.1...		Lus10032848 [exp]	5.5	0.9375
AT1G07160			Protein phosphatase 2C family ...		Lus10042275 [exp]	5.7	0.9443
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Lus10010055 [exp]	5.7	0.9315
AT5G04340	C2H2ZnF	ZAT6, CZF2, C2H...	COLD INDUCED ZINC FINGER PROTE...		Lus10004316 [exp]	7.0	0.9356
AT1G10350			DNAJ heat shock family protein...		Lus10013280 [exp]	8.2	0.8980
AT4G27280			Calcium-binding EF-hand family...		Lus10031588 [exp]	8.9	0.9330

Compare expression of checked genes

Lus10043182 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.