Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50700 404 / 3e-141 HSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50600 404 / 3e-141 ATHSD1 hydroxysteroid dehydrogenase 1 (.1) AT5G50770 306 / 6e-103 ATHSD6 hydroxysteroid dehydrogenase 6 (.1) AT3G47350 285 / 5e-95 ATHSD2 hydroxysteroid dehydrogenase 2 (.1.2) AT4G10020 281 / 1e-92 ATHSD5 hydroxysteroid dehydrogenase 5 (.1) AT5G50690 266 / 9e-88 ATHSD7 hydroxysteroid dehydrogenase 7 (.1) AT5G50590 266 / 9e-88 ATHSD4 hydroxysteroid dehydrogenase 4 (.1) AT3G47360 259 / 7e-85 ATHSD3 hydroxysteroid dehydrogenase 3 (.1) AT3G03330 96 / 4e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G65205 95 / 4e-22 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032556 [exp] 687 / 0 AT5G50600 411 / 4e-144 hydroxysteroid dehydrogenase 1 (.1) Lus10001511 [exp] 548 / 0 AT5G50600 388 / 5e-135 hydroxysteroid dehydrogenase 1 (.1) Lus10031448 [exp] 547 / 0 AT5G50600 378 / 3e-131 hydroxysteroid dehydrogenase 1 (.1) Lus10016748 [exp] 356 / 2e-120 AT5G50770 360 / 4e-122 hydroxysteroid dehydrogenase 6 (.1) Lus10022441 [exp] 340 / 1e-116 AT5G50770 349 / 3e-120 hydroxysteroid dehydrogenase 6 (.1) Lus10022442 [exp] 261 / 2e-85 AT3G47350 282 / 1e-94 hydroxysteroid dehydrogenase 2 (.1.2) Lus10041045 [exp] 252 / 5e-81 AT4G10020 506 / 3e-180 hydroxysteroid dehydrogenase 5 (.1) Lus10001280 [exp] 245 / 2e-78 AT4G10020 495 / 5e-176 hydroxysteroid dehydrogenase 5 (.1) Lus10009467 [exp] 243 / 2e-77 AT4G10020 501 / 1e-178 hydroxysteroid dehydrogenase 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G100000 [exp] 315 / 7e-107 AT5G50690 298 / 8e-101 hydroxysteroid dehydrogenase 7 (.1) Potri.012G101900 [exp] 309 / 1e-104 AT5G50690 287 / 9e-97 hydroxysteroid dehydrogenase 7 (.1) Potri.015G099900 [exp] 303 / 2e-102 AT5G50700 285 / 5e-95 hydroxysteroid dehydrogenase 1 (.1) Potri.012G102000 [exp] 293 / 3e-98 AT5G50700 279 / 7e-93 hydroxysteroid dehydrogenase 1 (.1) Potri.016G048900 [exp] 293 / 6e-98 AT5G50690 275 / 2e-91 hydroxysteroid dehydrogenase 7 (.1) Potri.016G048800 [exp] 285 / 7e-95 AT5G50690 284 / 2e-95 hydroxysteroid dehydrogenase 7 (.1) Potri.019G073200 [exp] 273 / 1e-89 AT4G10020 494 / 4e-176 hydroxysteroid dehydrogenase 5 (.1) Potri.013G100200 [exp] 265 / 7e-87 AT4G10020 506 / 0.0 hydroxysteroid dehydrogenase 5 (.1) Potri.012G125900 [exp] 87 / 3e-19 AT3G12800 421 / 9e-150 short-chain dehydrogenase-reductase B (.1) Potri.007G086600 [exp] 87 / 3e-19 AT5G10050 416 / 2e-147 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF00106 [flax] [poplar] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10043187 pacid=23168012 polypeptide=Lus10043187 locus=Lus10043187.g ID=Lus10043187.BGIv1.0 annot-version=v1.0 ATGGATCTGATTCACACGTTCCTCAACTTTGTAGCTCCACCATTCACATTCTTCTCCCTCTGCTTCCTCCTTCCGCCTTACTTCCTCTTCAAGACCTTCA CCTCAGCGGTGTCCTATGTCTTCAGCGAGAATGTCTCCGGCAAGGTCATCCTCATCACCGGCGCCTCCTCTGGCATCGGCGAGCATCTGGCTTATGAGTA TGGGAGCAGAGGCGCATGTTTGGTACTGGTGGCACGCAGAGAAAAAGGACTTAGAGAAGTAGTTGACCTTGCCCTTGAACTCGGATCTCCTCAAGTCATT ATGATCGTCGGAGATGTCCAAAAGGTCGATGACTGCCGCAGAATCGTCAACGAGACCATTAACCATTTCGGCAGACTGGATCACTTGGTGAACAATGCTG AGATCGGTTCAGTCTGCTTCTTTGAAGATGCAACTGATGTCACCAACTTCCGTACCATAATGGACACCAACTTCTGGGGTTCGGCTTACATAACCCAATT CGCAATTCCGTACCTGCTACAAGCGGCTGGCAAGATCATTGCTCTCTCTTCAGCAGGTTCTTGGCTCCCTGAGCCAAGGATGACCATCTACAATGCAAGC AAGGCAGCTATGGTGGCATTCTTCGAGACTCTTAGAGTCGAGCTAAGCCCAGACATAGGCGTCCTAATCGTCACCCCTGGTTACATCGAGTCGGAGCTCA CACAAGGCAAATTCATGACAGCTGAAGGCAGGATGGATGTAGATCAAGATTTGAGAGATGAAAAATTTGGTCCGATACCGGTGGCGTCCGTGGTAAGCAC GGCGAAGGGAATCGTGAATAGTGCGTGCAGAGGGGATAAGTACCTGACGGTGCCGGCATGGGTGAGAACGACGTGGTTATGGAAGATCTTCTGCCCTGAT GCTGTTGAGTTGGGTTACCGCTTGTTCTTCACCAGCGGCCGTCCCGGTGAGCCGGCTCCCAGCAAGAAAATGCTTGATATGACTGGAGCTCAGGGATTGA TGTACCCTTATTCCATCCTCAACCCTGCCATCAAGACAGTTTAA
AA sequence Show only first row Show all	>Lus10043187 pacid=23168012 polypeptide=Lus10043187 locus=Lus10043187.g ID=Lus10043187.BGIv1.0 annot-version=v1.0 MDLIHTFLNFVAPPFTFFSLCFLLPPYFLFKTFTSAVSYVFSENVSGKVILITGASSGIGEHLAYEYGSRGACLVLVARREKGLREVVDLALELGSPQVI MIVGDVQKVDDCRRIVNETINHFGRLDHLVNNAEIGSVCFFEDATDVTNFRTIMDTNFWGSAYITQFAIPYLLQAAGKIIALSSAGSWLPEPRMTIYNAS KAAMVAFFETLRVELSPDIGVLIVTPGYIESELTQGKFMTAEGRMDVDQDLRDEKFGPIPVASVVSTAKGIVNSACRGDKYLTVPAWVRTTWLWKIFCPD AVELGYRLFFTSGRPGEPAPSKKMLDMTGAQGLMYPYSILNPAIKTV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10043187 [exp]	0	1
AT3G02220			unknown protein		Lus10019392 [exp]	2.8	0.8264
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Lus10032982 [exp]	5.8	0.8199
AT2G28105			unknown protein		Lus10021424 [exp]	9.2	0.7700
					Lus10012012 [exp]	10.4	0.7682
AT3G16175			Thioesterase superfamily prote...		Lus10006834 [exp]	10.6	0.7478
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10038670 [exp]	11.4	0.7788
AT5G54680	bHLH	bHLH105, ILR3	iaa-leucine resistant3, basic ...		Lus10011167 [exp]	16.3	0.7405
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10008865 [exp]	18.9	0.7763
AT4G29860		EMB2757, TAN	TANMEI, EMBRYO DEFECTIVE 2757,...		Lus10019636 [exp]	23.0	0.7568
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10039050 [exp]	23.2	0.7133

Compare expression of checked genes

Lus10043187 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.