Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G50920 767 / 0 CLPC1, CLPC, ATHSP93-V, HSP93-V, DCA1 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) AT3G48870 710 / 0 ClpC2, ATCLPC, ATHSP93-III, HSP93-III ClpC2, Clp ATPase (.1.2) AT5G15450 411 / 7e-135 AtCLPB3, APG6, CLPB3, CLPB-P CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) AT2G25140 387 / 2e-125 HSP98.7, CLPB-M, CLPB4 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) AT5G51070 384 / 2e-124 SAG15, CLPD, ERD1 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) AT1G74310 381 / 1e-123 HOT1, ATHSP101 heat shock protein 101 (.1) AT4G14670 357 / 2e-117 CLPB2 casein lytic proteinase B2 (.1) AT3G45450 166 / 2e-47 Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein (.1) AT3G15120 44 / 0.0003 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036017 [exp] 784 / 0 AT5G50920 1542 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10032544 [exp] 779 / 0 AT5G50920 1271 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10016723 [exp] 777 / 0 AT5G50920 1526 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Lus10043013 [exp] 387 / 1e-125 AT5G51070 1288 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10032514 [exp] 389 / 3e-122 AT5G51070 1280 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Lus10041018 [exp] 377 / 2e-121 AT2G25140 1511 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Lus10021159 [exp] 361 / 8e-117 AT1G74310 1421 / 0.0 heat shock protein 101 (.1) Lus10040528 [exp] 309 / 1e-96 AT1G74310 1496 / 0.0 heat shock protein 101 (.1) Lus10030705 [exp] 302 / 3e-93 AT5G15450 1619 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G105900 [exp] 763 / 0 AT5G50920 1505 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.015G105100 [exp] 762 / 0 AT5G50920 1508 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1) Potri.006G262700 [exp] 404 / 4e-132 AT2G25140 1361 / 0.0 HEAT SHOCK PROTEIN 98.7, CASEIN LYTIC PROTEINASE B-M, casein lytic proteinase B4 (.1) Potri.004G124800 [exp] 395 / 8e-129 AT5G15450 1567 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.012G112000 [exp] 385 / 4e-125 AT5G51070 1328 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G110000 [exp] 379 / 1e-122 AT5G51070 1282 / 0.0 SENESCENCE ASSOCIATED GENE 15, EARLY RESPONSIVE TO DEHYDRATION 1, Clp ATPase (.1) Potri.015G057000 [exp] 376 / 7e-122 AT1G74310 1567 / 0.0 heat shock protein 101 (.1) Potri.015G056900 [exp] 376 / 9e-122 AT1G74310 1566 / 0.0 heat shock protein 101 (.1) Potri.017G090600 [exp] 356 / 1e-113 AT5G15450 1598 / 0.0 CASEIN LYTIC PROTEINASE B-P, ALBINO AND PALE GREEN 6, casein lytic proteinase B3 (.1) Potri.005G197400 [exp] 318 / 1e-103 AT5G50920 583 / 0.0 HEAT SHOCK PROTEIN 93-V, DE-REGULATED CAO ACCUMULATION 1, CLPC homologue 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0671 [flax] [poplar] AAA_lid PF02151 [flax] [poplar] UVR UvrB/uvrC motif CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA) CL0023 [flax] [poplar] P-loop_NTPase PF07724 [flax] [poplar] AAA_2 AAA domain (Cdc48 subfamily)
Representative CDS sequence Show only first row Show all	>Lus10043197 pacid=23167978 polypeptide=Lus10043197 locus=Lus10043197.g ID=Lus10043197.BGIv1.0 annot-version=v1.0 ATGGTGGGTGAGAGCAATGAAGTTACGGCTAACGTTGGAGCAAGTGCCAGGGACACAAAGATGCCGACTCTTGAAGAATATGGAACTAATTTGACCAAAC TTGCAGAGGAGAGCGTGTCGCGTGTCGTCCAAATCTTGGGTCGGAGGACTAAGAATAACCCTTGTCTAATTGGAGAGCCAGGCGTTGGTAAAACAGCAAT TGCTGAGGGTCTTGCTCAACGAATAGCAAGTGGTGATGTTCCTGAAACAATTGAAGGAAAGAAGGTTATCACTTTGGATATGGGTCTTCTTGTTGCTGGA ACAAAGTACCGTGGAGAGTTTGAGGAAAGGCTGAAGAAGCTAATGGAGGAAATCAAACAGAGTGATGAAATTATTCTTTTCATTGATGAGGTGCATACGT TAATTGGTGCTGGAGCTGCAGAAGGCGCCATTGATGCAGCTAATATCTTGAAACCAGCTCTTGCTAGGGGTGAATTGCAGTGCATAGGAGCTACAACATT AGACGAATACCGAAAACATATTGAGAAGGACCCAGCTTTGGAAAGACGATTCCAGCCTGTCAAAGTACCAGAGCCATCTGTGGATGAAACCATTCAGATA TTGAAAGGGCTTCGTGAGCGATATGAGATTCACCACAAGCTTCGCTACACAGATGAGTCCCTAGAAGCTGCCGCCAATCTATCATATCAGTATATCAGTG ACCGTTTCTTGCCTGACAAGGCAATTGACTTGATTGATGAAGCTGGCTCTCGTGTTCGTCTGCGCCATGCACAGGTCCCTGAGGAAGCTAAGGAGCTCGA GAAAGAGGTCAGGCAGATTATAAAGGAGAAGGATGAAGCTGTTCGCAATCAAGACTTTGAAAAGGCTGGAGAATTGCGTGATCGAGAAATGGACCTCAAG GCGCAGATCTCAGCTATCGTGGAGAAGGGCAAGGAGATGAGTAAAGCCGAAACGGAGGCCGGGGAGGAAGGTCCGATGGTGACTGAAGCAGACATTCAGC ACATTGTCTCTTCATGGACCGGAATTCCCGTTGAGAAGGTGTCTGCCGATGAATCCGACCGCCTGCTAAAGATGGAAGAGACCTTGCACAAGAGGGTCAT CGGTCAGGACGAAGCTGTCGAAGCCATTAGCCGCGCTATTCGCAGGGCCCGTGTCGGACTCAAGAACCCCAACAGGCCGATCGCCAGCTTCATCTTTTCC GGTCCGACCGGTGTTGGAAAGTCGGAACTCGCAAAAGCCCTTGCTGCCTACTACTATGGGTCGGAAGAAGCCATGACTAGACTCGACATGAGTCATGATG CTTCAAATCCTGGAAGACGGAAGGTTGACCGATAG
AA sequence Show only first row Show all	>Lus10043197 pacid=23167978 polypeptide=Lus10043197 locus=Lus10043197.g ID=Lus10043197.BGIv1.0 annot-version=v1.0 MVGESNEVTANVGASARDTKMPTLEEYGTNLTKLAEESVSRVVQILGRRTKNNPCLIGEPGVGKTAIAEGLAQRIASGDVPETIEGKKVITLDMGLLVAG TKYRGEFEERLKKLMEEIKQSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPALERRFQPVKVPEPSVDETIQI LKGLRERYEIHHKLRYTDESLEAAANLSYQYISDRFLPDKAIDLIDEAGSRVRLRHAQVPEEAKELEKEVRQIIKEKDEAVRNQDFEKAGELRDREMDLK AQISAIVEKGKEMSKAETEAGEEGPMVTEADIQHIVSSWTGIPVEKVSADESDRLLKMEETLHKRVIGQDEAVEAISRAIRRARVGLKNPNRPIASFIFS GPTGVGKSELAKALAAYYYGSEEAMTRLDMSHDASNPGRRKVDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043197 [exp]	0	1
AT1G62750		ATSCO1, ATSCO1/...	SNOWY COTYLEDON 1, Translation...		Lus10004326 [exp]	1.4	0.9037
AT2G41680		NTRC	NADPH-dependent thioredoxin re...		Lus10018051 [exp]	4.9	0.8519
AT4G30825			Tetratricopeptide repeat (TPR)...		Lus10036601 [exp]	8.1	0.8709
AT5G08740		NDC1	NAD(P)H dehydrogenase C1 (.1)		Lus10032131 [exp]	8.2	0.8681
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10041853 [exp]	13.0	0.8354
AT5G50920		CLPC1, CLPC, AT...	HEAT SHOCK PROTEIN 93-V, DE-RE...		Lus10043198 [exp]	13.2	0.8621
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Lus10028399 [exp]	17.6	0.8690
AT2G16365			F-box family protein (.1.2.3.4...		Lus10023554 [exp]	24.0	0.7994
AT3G19810			Protein of unknown function (D...		Lus10017411 [exp]	25.5	0.7824
AT1G76050			Pseudouridine synthase family ...		Lus10017250 [exp]	27.6	0.8428

Compare expression of checked genes

Lus10043197 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.