Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24530 724 / 0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) AT4G19150 66 / 4e-12 Ankyrin repeat family protein (.1.2) AT2G14255 64 / 1e-10 Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT5G20350 63 / 2e-10 TIP1 TIP GROWTH DEFECTIVE 1, Ankyrin repeat family protein with DHHC zinc finger domain (.1) AT2G03430 62 / 2e-10 Ankyrin repeat family protein (.1) AT4G27780 55 / 5e-08 ACBP2 acyl-CoA binding protein 2 (.1) AT2G28840 55 / 9e-08 XBAT31 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) AT5G07840 51 / 2e-07 PIA1 phytochrome interacting ankyrin-repeat protein 1, Ankyrin repeat family protein (.1) AT5G66055 51 / 1e-06 EMB16, EMB2036, AKRP EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) AT1G14480 50 / 2e-06 Ankyrin repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023642 [exp] 867 / 0 AT3G24530 773 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10034913 [exp] 845 / 0 AT3G24530 748 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10011096 [exp] 550 / 0 AT3G24530 471 / 5e-167 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10011097 [exp] 350 / 3e-120 AT3G24530 252 / 2e-82 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10005293 [exp] 147 / 2e-42 AT3G24530 146 / 5e-43 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Lus10001414 [exp] 70 / 4e-13 AT4G19150 245 / 9e-82 Ankyrin repeat family protein (.1.2) Lus10001048 [exp] 63 / 6e-11 AT4G19150 230 / 6e-76 Ankyrin repeat family protein (.1.2) Lus10016561 [exp] 63 / 2e-10 AT2G28840 640 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Lus10010667 [exp] 53 / 2e-07 AT2G03430 82 / 5e-18 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G081000 [exp] 779 / 0 AT3G24530 754 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Potri.006G158600 [exp] 761 / 0 AT3G24530 741 / 0.0 AAA-type ATPase family protein / ankyrin repeat family protein (.1) Potri.003G103400 [exp] 81 / 6e-17 AT4G19150 234 / 2e-77 Ankyrin repeat family protein (.1.2) Potri.001G130500 [exp] 77 / 7e-16 AT4G19150 222 / 1e-72 Ankyrin repeat family protein (.1.2) Potri.010G185200 [exp] 57 / 1e-08 AT2G03430 76 / 3e-15 Ankyrin repeat family protein (.1) Potri.010G161300 [exp] 55 / 2e-08 AT2G03430 356 / 1e-125 Ankyrin repeat family protein (.1) Potri.005G105800 [exp] 56 / 3e-08 AT5G66055 457 / 3e-159 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.001G238800 [exp] 56 / 4e-08 AT2G28840 657 / 0.0 XB3 ortholog 1 in Arabidopsis thaliana (.1.2) Potri.007G060400 [exp] 54 / 1e-07 AT5G66055 462 / 2e-161 EMBRYO DEFECTIVE 2036, EMBRYO DEFECTIVE 16, ankyrin repeat protein (.1.2) Potri.015G010200 [exp] 52 / 6e-07 AT4G27780 432 / 3e-152 acyl-CoA binding protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10043218 pacid=23168408 polypeptide=Lus10043218 locus=Lus10043218.g ID=Lus10043218.BGIv1.0 annot-version=v1.0 ATGCAGAGGCCTTCCCAGGGTCAACGGTCGACCTCTTCTAAGCCCGCCACTATTCACGCCTTCGTCCAGTCCGGCGACCTTCCCGCCGTCCAGAAGCTGC TTCGTGTCAACCCTTCTCTTCTCAATGACAGAAACCCTGTCATGTCGCAGACTCCTCTACATGTTTCAGCTGGAAACAACAAGGGGGAGATCGTTAAATT TCTGCTGAGTTGGAAAGGAGCTGACAATGTTGAATTGGAAGCTAAAAACATGTATGGGGAAACTCCACTGCACATGGCAGCAAAGAACGGCTGCAAAGAA GCTGCACAGTTACTCCTATCTCATGGCGCTTTCATTGAGGCCAGAGCAAATAACGGTATGACTCCATTACACCTGGCTGTTTGGTACTCTATAAGATCAG ATGATTGCTTGACTGTCAAGACATTGCTAGAGTACAATGCTGACTGCAGTGCAAAGGACAATGAGGGCATGGCTCCTCTGAACCATCTCTCGCACGGCCC AGGCAGTGAGAAGCTGCGGGATCTATTGAACCATTATGTTGAAGTGCAGAAAAGGAGGAAGGCAGTCGAAGCATGCAGTGAATCGAAATCTAAGATGGAA GAACTTGAGAAAGCATTGTCAAACATAGTAGGGTTGCATGATCTCAAGGTTCAGCTAAGAAAATGGGCCAAGGGGATGCTTTTGGACGAAAGGCGCAGGG CACTTGGTCTGAAACTAGGTGTTAGAAGGCCTCCTCATATGGCTTTTCTTGGAAATCCCGGAACAGGTAAGACTATGGTAGCACGAATACTTGGAAGATT GCTCCATCTGGTTGGCATCCTGCCTACAGATCGAGTTACTGAAGTACAGCGTACGGATTTGGTTGGCGAATTCGTTGGCCATACCGGACCAAAAACTAGG AAGAAGATCAAAGAAGCCGAGGGAGGAATTCTTTTCGTGGACGAGGCATATCGTCTTATACCAATGCAGAAAGCTGACGACAAGGATTACGGGTTAGAAG CATTGGAAGAGATAATGTCAGTTATGGACAGTGGGAAGATTGTGGTCATATTTGCTGGTTACAGTGAACCGATGAAACGTGTAATCGCTTCGAATGAAGG CTTCTGCAGAAGGGTAACCAAGTTCTTCACATTCGACGACTTCTCTTCACAGGACTTGGCCAACGTTGTCAATATAAAGATGGCTAGCCAAGAAGAACAA GGCATGCTGTATGGATTCCAGTTACATCCTACTTGCAGCGTCGATGCCATGGAGAGGTTGATAGGGAGAGAGAGCACGGAGAAGCAGCGGAGGGAGATGA ATGGAGGGCTAGTGGATACCATGCTGGTGAATGCTAGAGAGAATCTGGATCTCAGGCTGGATTTTGATTGTGTTGATGCTGACGAACTTCGGACAATCAC GTTGGAGGACCTCAAAGCAGGATTGCGGTTGTTGTCTCGGTCATGA
AA sequence Show only first row Show all	>Lus10043218 pacid=23168408 polypeptide=Lus10043218 locus=Lus10043218.g ID=Lus10043218.BGIv1.0 annot-version=v1.0 MQRPSQGQRSTSSKPATIHAFVQSGDLPAVQKLLRVNPSLLNDRNPVMSQTPLHVSAGNNKGEIVKFLLSWKGADNVELEAKNMYGETPLHMAAKNGCKE AAQLLLSHGAFIEARANNGMTPLHLAVWYSIRSDDCLTVKTLLEYNADCSAKDNEGMAPLNHLSHGPGSEKLRDLLNHYVEVQKRRKAVEACSESKSKME ELEKALSNIVGLHDLKVQLRKWAKGMLLDERRRALGLKLGVRRPPHMAFLGNPGTGKTMVARILGRLLHLVGILPTDRVTEVQRTDLVGEFVGHTGPKTR KKIKEAEGGILFVDEAYRLIPMQKADDKDYGLEALEEIMSVMDSGKIVVIFAGYSEPMKRVIASNEGFCRRVTKFFTFDDFSSQDLANVVNIKMASQEEQ GMLYGFQLHPTCSVDAMERLIGRESTEKQRREMNGGLVDTMLVNARENLDLRLDFDCVDADELRTITLEDLKAGLRLLSRS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24530			AAA-type ATPase family protein...		Lus10043218 [exp]	0	1
AT1G72160			Sec14p-like phosphatidylinosit...		Lus10009453 [exp]	3.7	0.9549
AT1G76240			Arabidopsis protein of unknown...		Lus10016005 [exp]	5.2	0.9517
AT1G64650			Major facilitator superfamily ...		Lus10000336 [exp]	5.5	0.9563
AT3G16850			Pectin lyase-like superfamily ...		Lus10016837 [exp]	11.2	0.9439
AT2G03350			Protein of unknown function, D...		Lus10036804 [exp]	15.9	0.9450
AT1G08440			Aluminium activated malate tra...		Lus10001849 [exp]	19.1	0.9317
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	21.4	0.9382
AT5G20950			Glycosyl hydrolase family prot...		Lus10043457 [exp]	22.8	0.9512
AT1G18700			DNAJ heat shock N-terminal dom...		Lus10001649 [exp]	25.4	0.9284
AT4G14380			unknown protein		Lus10021182 [exp]	26.5	0.8731

Compare expression of checked genes

Lus10043218 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.