Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11590 161 / 5e-49 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1) AT4G32800 155 / 1e-46 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G25810 153 / 4e-46 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT2G44940 142 / 7e-41 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G77200 135 / 5e-39 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G16280 133 / 4e-38 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G25820 130 / 6e-37 AP2_ERF ESE2 ethylene and salt inducible 2, Integrase-type DNA-binding superfamily protein (.1) AT4G16750 127 / 3e-36 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G60490 126 / 4e-35 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G35700 124 / 4e-35 AP2_ERF ATERF38 ERF family protein 38 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034949 [exp] 180 / 3e-55 AT4G32800 169 / 3e-51 Integrase-type DNA-binding superfamily protein (.1) Lus10011123 [exp] 156 / 7e-48 AT5G11590 143 / 6e-43 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10002801 [exp] 151 / 5e-45 AT5G11590 209 / 4e-68 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10038607 [exp] 130 / 2e-37 AT5G11590 168 / 1e-52 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10038270 [exp] 128 / 2e-36 AT5G11590 168 / 4e-52 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10001601 [exp] 127 / 4e-36 AT5G11590 159 / 1e-48 TINY2, Integrase-type DNA-binding superfamily protein (.1) Lus10007799 [exp] 120 / 2e-34 AT2G44940 136 / 7e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10004738 [exp] 122 / 6e-34 AT2G35700 144 / 7e-44 ERF family protein 38 (.1) Lus10025834 [exp] 120 / 3e-33 AT5G11590 164 / 2e-50 TINY2, Integrase-type DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G085700 [exp] 171 / 3e-52 AT4G32800 155 / 4e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.018G043900 [exp] 151 / 5e-45 AT5G11590 212 / 5e-69 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G187500 [exp] 149 / 3e-44 AT5G25810 157 / 9e-48 TINY, Integrase-type DNA-binding superfamily protein (.1) Potri.003G050700 [exp] 147 / 1e-43 AT5G11590 166 / 5e-51 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.006G163400 [exp] 148 / 3e-43 AT4G32800 159 / 6e-48 Integrase-type DNA-binding superfamily protein (.1) Potri.003G079300 [exp] 133 / 3e-38 AT4G16750 150 / 7e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.001G155700 [exp] 132 / 2e-37 AT2G44940 159 / 1e-47 Integrase-type DNA-binding superfamily protein (.1) Potri.006G238600 [exp] 132 / 2e-37 AT5G11590 199 / 8e-64 TINY2, Integrase-type DNA-binding superfamily protein (.1) Potri.014G055700 [exp] 129 / 6e-36 AT2G44940 206 / 2e-65 Integrase-type DNA-binding superfamily protein (.1) Potri.002G141200 [exp] 125 / 8e-35 AT2G44940 158 / 6e-47 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [flax] [poplar] MBD-like PF00847 [flax] [poplar] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Lus10043240 pacid=23168005 polypeptide=Lus10043240 locus=Lus10043240.g ID=Lus10043240.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTGATTCTCCGCCACCGCCCACTGCTTACTCCTCCTCCTCTTTTGGTTTTTCGGGTCAACCCGTCCCCAACCCGGAACCTGATAAAACTA ATTACAATAATATTAATATTAAAAGTAAGCTGAAGAGAGGGAGAGGGGACGACGGCGGCAGAGGGAGTGGGACGACGACGACGAAGCATCCTGTGTACAG AGGGGTGCGAATGAGGACGTGGGGCAAGTGGGTTTCCGAGATTCGGGAGCCCCGCAAGAAGAGCCGGATCTGGTTGGGCACTTTCGCCACTCCTGAAATG GCGGCACGTGCTCACGACGTCGCCGCCTTGTCCATCAAAGGCCCCACCGCCGCCATACTTAACTTCCCCCAACTCTCCGCCTCACTGCCCCGGCCCGTCT CCAGCTCCCCCCGCGACGTCCGGGCCGCCGCCCTCAAAGCCGCCTCCATGGATTTCTTCCCCGACGCCGCCGCGGCTACTCCGGAAGAGCTTTCCGAGAT AGTGGAGTTGCCTAGCCTTCAGGGATCGGAGACTGGATGCTTATCGGACGAAAGTAAGGCGGCGGCGGCTGCAGCCGCGGAGTTGGTGGATGAGTTCGTA CTTTACGGGGATTCTTGGCTGTATGATCGGACGTGGTACGGGGATTACTGCAGCGCTGTGGGAGAATACTTTAGCGACGGCGGCATGCTGTCACTATTAC CGGAAAGTGGCAACGGCGGCGGTGGCAGCGGTTGTGGGATCTCGTTGTGGCAGCATTAG
AA sequence Show only first row Show all	>Lus10043240 pacid=23168005 polypeptide=Lus10043240 locus=Lus10043240.g ID=Lus10043240.BGIv1.0 annot-version=v1.0 MAAADSPPPPTAYSSSSFGFSGQPVPNPEPDKTNYNNINIKSKLKRGRGDDGGRGSGTTTTKHPVYRGVRMRTWGKWVSEIREPRKKSRIWLGTFATPEM AARAHDVAALSIKGPTAAILNFPQLSASLPRPVSSSPRDVRAAALKAASMDFFPDAAAATPEELSEIVELPSLQGSETGCLSDESKAAAAAAAELVDEFV LYGDSWLYDRTWYGDYCSAVGEYFSDGGMLSLLPESGNGGGGSGCGISLWQH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Lus10043240 [exp]	0	1
AT1G05260		RCI3A, RCI3	RARE COLD INDUCIBLE GENE 3, Pe...		Lus10015127 [exp]	1.4	0.9724
AT2G16750			Protein kinase protein with ad...		Lus10019787 [exp]	2.8	0.9617
AT3G51930			Transducin/WD40 repeat-like su...		Lus10039568 [exp]	3.7	0.9510
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10034032 [exp]	3.9	0.9584
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10036177 [exp]	3.9	0.9654
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10035932 [exp]	4.9	0.9581
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10011430 [exp]	6.8	0.9667
AT3G21360			2-oxoglutarate (2OG) and Fe(II...		Lus10006839 [exp]	7.3	0.9465
AT1G63940		MDAR6	monodehydroascorbate reductase...		Lus10028763 [exp]	11.0	0.9528
AT4G32890	GATA	GATA9	GATA transcription factor 9 (....		Lus10037572 [exp]	13.9	0.9560

Compare expression of checked genes

Lus10043240 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.