Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15990 662 / 0 SULTR3;4 sulfate transporter 3;4 (.1) AT1G23090 600 / 0 SULTR3;3, AST91 sulfate transporter 91 (.1) AT3G51895 509 / 2e-172 AST12, ATST1, SULTR3;1 sulfate transporter 3;1 (.1) AT1G22150 476 / 2e-159 SULTR1;3 sulfate transporter 1;3 (.1) AT4G08620 469 / 4e-157 SULTR1.2, SULTR1;1 sulphate transporter 1;1 (.1) AT1G78000 456 / 4e-152 SEL1, SULTR1;2 SELENATE RESISTANT 1, sulfate transporter 1;2 (.1.2) AT4G02700 454 / 3e-151 SULTR3;2, AST77 sulfate transporter 3;2 (.1) AT5G19600 425 / 6e-140 SULTR3;5 sulfate transporter 3;5 (.1) AT5G10180 402 / 1e-130 SULTR2;1, AST68 sulfate transporter 2;1, ARABIDOPSIS SULFATE TRANSPORTER 68, slufate transporter 2;1 (.1) AT1G77990 394 / 1e-127 SULTR2;2, AST56 SULPHATE TRANSPORTER 2;2, STAS domain / Sulfate transporter family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019389 [exp] 1125 / 0 AT3G15990 829 / 0.0 sulfate transporter 3;4 (.1) Lus10035897 [exp] 644 / 0 AT3G15990 1014 / 0.0 sulfate transporter 3;4 (.1) Lus10025766 [exp] 643 / 0 AT3G15990 1012 / 0.0 sulfate transporter 3;4 (.1) Lus10025767 [exp] 585 / 0 AT3G15990 947 / 0.0 sulfate transporter 3;4 (.1) Lus10034603 [exp] 570 / 0 AT1G23090 953 / 0.0 sulfate transporter 91 (.1) Lus10035896 [exp] 565 / 0 AT3G15990 920 / 0.0 sulfate transporter 3;4 (.1) Lus10006612 [exp] 502 / 8e-170 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10039364 [exp] 497 / 1e-166 AT3G51895 966 / 0.0 sulfate transporter 3;1 (.1) Lus10029616 [exp] 482 / 8e-162 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G056200 [exp] 655 / 0 AT3G15990 976 / 0.0 sulfate transporter 3;4 (.1) Potri.001G179400 [exp] 652 / 0 AT3G15990 990 / 0.0 sulfate transporter 3;4 (.1) Potri.010G111700 [exp] 607 / 0 AT1G23090 1028 / 0.0 sulfate transporter 91 (.1) Potri.008G130400 [exp] 589 / 0 AT1G23090 998 / 0.0 sulfate transporter 91 (.1) Potri.002G049500 [exp] 524 / 2e-178 AT3G51895 1028 / 0.0 sulfate transporter 3;1 (.1) Potri.005G213500 [exp] 521 / 2e-177 AT3G51895 1040 / 0.0 sulfate transporter 3;1 (.1) Potri.010G082700 [exp] 511 / 3e-173 AT3G51895 995 / 0.0 sulfate transporter 3;1 (.1) Potri.008G156600 [exp] 489 / 1e-164 AT3G51895 949 / 0.0 sulfate transporter 3;1 (.1) Potri.005G167300 [exp] 472 / 7e-158 AT1G22150 996 / 0.0 sulfate transporter 1;3 (.1) Potri.002G092500 [exp] 469 / 4e-157 AT1G22150 973 / 0.0 sulfate transporter 1;3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0502 [flax] [poplar] STAS PF01740 [flax] [poplar] STAS STAS domain CL0062 [flax] [poplar] APC PF00916 [flax] [poplar] Sulfate_transp Sulfate permease family
Representative CDS sequence Show only first row Show all	>Lus10043247 pacid=23168135 polypeptide=Lus10043247 locus=Lus10043247.g ID=Lus10043247.BGIv1.0 annot-version=v1.0 ATGGTCAGGACACCACCAGCAGAGAAGCATGACGAACATCATCAACACCAAAATCACACATCGATAGCCTCAGCCTCTGATTTCCATACCCCTCTAAGAC TTTCAATTGAGACCCCTCGAGCACCAAGTTTCTCAGGGAACCGGCAATTGCCAAGAATCATTGACTACGACGACCCAATTCCTGAGATTACCATGGCTTC TTCTCGTCAAGATCAAACTTCCATTCTTATTCCGAACAATGCCACACTTCTCGACCATGATGATTTCCCACTGGGATCGTCGTCCTCAGGGACTAAAAAG GGGAATAATTTTAACAACCATGTAGAGATACATGATGTGTGCCACCCGCCTCATGTTTCGACGTGTGACAAGTTTAAGGCGAGATTGCGTGAGATTTTCT TTCCTGAAGACCCTTTCCATGTCTTCAGGAAGAAGGACCAAACTCTTGCTATGAAGTTCCTCCAGGCTTTCCAGTATGTCTTTCCTATAATCGGATGGTT AAGAAGTTATGATCTCGATATGTTTCGGTCTGATGCCATAGCGGGTCTCACCATTGCAAGCTTGGCAATCCCTCAGGGTATCAGTTATGCCAAACTTGCA AACCTGCCAGCAATAATTGGACTATATTCAAGCTTTGTGCCACCACTGATATATGTGGTTCTGGGGAGTTCAAGACATTTAGGGATTGGTCCTGTCTCAG TTGCATCTCTAGTCATAGGTTCAATGTTGAGTGAATCTGTTTCTCCTGATACAGAAACAGAACTGTATGTAAGCCTTGCTTTCACTGCTACACTTTTTGC CGGTTTGCTCCAAGCTGGTCTGGGCATTTTTAGGTTAGGGTTCATCATTGATTTCCTATCAAAGGCAACTTTAACCGGGTTCATGGCTGGAGTAGCAGTG ATTGTGATCCTCCAACAGCTCAAAGGACTGTTTGGAATTGTACATTTCACCAAACAAATGCAGATCATCCCTGTTTTGAAATCCGTCATCAGTGAAGAGA AAGAGAGCGCAAGAAGGCCAAAGCTTTTCTGGGTATCTGCACTTTGTCCACTAACTTCAGTTATCATTTCAACTGTCATCATGTTCGTGTTCAAGAAGAA ACTTCATCGAGTCTCAACAGTTAAGCATACTGCAGAAAGGAAGTTGCCAGAAGGACTGAACCCATCTTCACTGAAACGATTGTACTTCCATGGCCCTTAC CTGCCTCTAGTCATTAAAACTGGCATCTTGGCTGGAGTTCTGTCTCTCACTGAAGGAATTGCAGTGGGAAGAACATGCGCTAGCATGAGCAACTACCAAA TTGACGGCAACAAGGAAATGATAGCAATTGGTGCCATGAACCTCTGCGGCTGTTTATGCTCTTGCTACGTTGTCTCAGGAGGATTTGCACGATCTGCAGT GAATTACAACGCAGGAGCGAAAACTGCGATTTCAAACATGATAATGGCGCTAGCCGTGATGGTAACTCTGTTGTTGTTGATGCCGTTGTTCTACTACACT CCTAACGCCGTGCTAGCCGCCATTATAATATCTGCCGTCATCGGGTTCATCGATCTAAACGCAGCGTACCACCTCTACAAGCTGGACAAACTCGACTTCC TCATCTTCTTATGTTCCTTCTTCGGTGTTCTCTTCCTCTCTGTCCCAATGGGACTTGCAATAGCAATTGGGATTTCATTGTTGAAAATAATCCTGAATGT ATCGAGGCCGTTCACGTCGGTGCTGGGGAACATCCCAGGGACTCAGATATACCGAGATCTCGCGTGTTACAGTAACGCAGTTAGAGTTCCTGCTTTCCTG ATTCTCAGCATCGAATCGCCCATCTATTTCGCAAACTCGATGTATATCCAGGAAAGGATATTGAGATGGATAAGGGAGGAAGAACAGAGGATTCAGGAAA CAGGGGAGAGCATCCTCAAATGTGTAATCCTTGACATCACTGCGGTGACGAACATTGACAGCAGTGGGATTGAAATGTTGAACCAGTTGAAGAGAACAAT GGACATAAGTTTACTTCAGCTGGTACTAGTGAACCCAGTGGCAATTGTGATGGAGAGGCTTCAGAATGCTAGGTTCATGGCAACTTTCCAGTCCAGAGGA CTTTATTTGACCATTGGAGAAGCTGTTGTTGACATTTCTTCTTCATGGAGACGTTAA
AA sequence Show only first row Show all	>Lus10043247 pacid=23168135 polypeptide=Lus10043247 locus=Lus10043247.g ID=Lus10043247.BGIv1.0 annot-version=v1.0 MVRTPPAEKHDEHHQHQNHTSIASASDFHTPLRLSIETPRAPSFSGNRQLPRIIDYDDPIPEITMASSRQDQTSILIPNNATLLDHDDFPLGSSSSGTKK GNNFNNHVEIHDVCHPPHVSTCDKFKARLREIFFPEDPFHVFRKKDQTLAMKFLQAFQYVFPIIGWLRSYDLDMFRSDAIAGLTIASLAIPQGISYAKLA NLPAIIGLYSSFVPPLIYVVLGSSRHLGIGPVSVASLVIGSMLSESVSPDTETELYVSLAFTATLFAGLLQAGLGIFRLGFIIDFLSKATLTGFMAGVAV IVILQQLKGLFGIVHFTKQMQIIPVLKSVISEEKESARRPKLFWVSALCPLTSVIISTVIMFVFKKKLHRVSTVKHTAERKLPEGLNPSSLKRLYFHGPY LPLVIKTGILAGVLSLTEGIAVGRTCASMSNYQIDGNKEMIAIGAMNLCGCLCSCYVVSGGFARSAVNYNAGAKTAISNMIMALAVMVTLLLLMPLFYYT PNAVLAAIIISAVIGFIDLNAAYHLYKLDKLDFLIFLCSFFGVLFLSVPMGLAIAIGISLLKIILNVSRPFTSVLGNIPGTQIYRDLACYSNAVRVPAFL ILSIESPIYFANSMYIQERILRWIREEEQRIQETGESILKCVILDITAVTNIDSSGIEMLNQLKRTMDISLLQLVLVNPVAIVMERLQNARFMATFQSRG LYLTIGEAVVDISSSWRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15990		SULTR3;4	sulfate transporter 3;4 (.1)		Lus10043247 [exp]	0	1
					Lus10026149 [exp]	1.4	0.9999
AT3G11930			Adenine nucleotide alpha hydro...		Lus10029310 [exp]	2.0	0.9995
AT4G35160			O-methyltransferase family pro...		Lus10017691 [exp]	16.6	0.9987
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Lus10039186 [exp]	19.6	0.9878
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10034971 [exp]	20.0	0.9859
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Lus10007220 [exp]	21.4	0.9965
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10028316 [exp]	22.0	0.9722
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008511 [exp]	24.2	0.9955
					Lus10009206 [exp]	26.5	0.9955
AT5G04190		PKS4	phytochrome kinase substrate 4...		Lus10013442 [exp]	26.6	0.9823

Compare expression of checked genes

Lus10043247 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.