Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27740 528 / 0 RFC3, EMB251, EMB161, EMB2775 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) AT1G21690 107 / 5e-26 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G77470 88 / 9e-19 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) AT1G63160 86 / 4e-18 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) AT5G45720 44 / 0.0002 AAA-type ATPase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019391 [exp] 595 / 0 AT5G27740 643 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10028316 [exp] 208 / 9e-61 AT5G27740 271 / 6e-86 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10041764 [exp] 207 / 5e-60 AT5G27740 269 / 3e-84 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10023809 [exp] 120 / 2e-31 AT5G27740 138 / 2e-39 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Lus10028543 [exp] 97 / 3e-22 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10025689 [exp] 91 / 8e-20 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10018144 [exp] 91 / 8e-20 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10024504 [exp] 88 / 5e-19 AT1G63160 615 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10008003 [exp] 87 / 8e-19 AT1G63160 605 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G040000 [exp] 551 / 0 AT5G27740 621 / 0.0 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.005G120901 [exp] 206 / 7e-59 AT5G27740 240 / 8e-72 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.007G022900 [exp] 196 / 9e-57 AT5G27740 261 / 2e-82 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.003G093400 [exp] 135 / 4e-35 AT5G27740 182 / 2e-53 replication factor C 3, EMBRYO DEFECTIVE 2775, EMBRYO DEFECTIVE 251, EMBRYO DEFECTIVE 161, ATPase family associated with various cellular activities (AAA) (.1) Potri.005G181300 [exp] 99 / 7e-23 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G081200 [exp] 96 / 9e-22 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.003G123200 [exp] 92 / 1e-20 AT1G63160 587 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Potri.002G080100 [exp] 82 / 7e-17 AT1G21690 505 / 1e-180 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.004G061700 [exp] 46 / 6e-05 AT4G18820 1031 / 0.0 AAA-type ATPase family protein (.1) Potri.011G071300 [exp] 45 / 0.0001 AT4G18820 1047 / 0.0 AAA-type ATPase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10043248 pacid=23168338 polypeptide=Lus10043248 locus=Lus10043248.g ID=Lus10043248.BGIv1.0 annot-version=v1.0 ATGAACGAGCATCTGAAGTACCCACCTTCCGTCATCGATCCCTCAATAGAACTCAAGGAGGTTGCTGAGCAGGATTGCCCTCATTTGCTTTTCTATGGCC CTTCTGGTGCTGGGAAGAAGACACTGATTATGGCTTTGCTCCGTCAAATATTTGGCCCCGGTGCTGAAAAGGTGAAGGTGGAAAACAGGACGTGGAAAGT TGATGCTGGAAGTAGAACCATTGATCTTGAGTTGACTACATTAGCCAGTGCAAACCATGTGGAATTAAGTCCTAGTGATGCAGGCTTCCAGGATAGATAT ATTGTCCAGGAGATAATCAAAGAGATGGCCAGGAATAGGCCAATTGACACAAATGGAAAGAAATCGTATAAAGTGATAGTTCTTAATGAGGTTGACAAGC TTTCAAGAGAAGCCCAGCATTCTTTGCGAAGAACTATGGAGAAATATAGTAGTTCATGCCGGCTCATTTTGTGCTGCAACAGTTCTTCAAAGGTTACTGA GGCCATCCGGTCTCGTTGTCTGAATGTTCGAATTAATGCACCTTCAGAGGAACAGATAGTTAGGGTTTTGGAGTTCATTGGGAAGAAAGAAGGGTTGGAC ATTCCATCTGGATTTGCTGGGCGTGTAGCTGAAAAATCGAATCGGAGTTTAAGGAGAGCCATACTCTCATTCGAGACTTGCCGGGTTCAACAGTCCCCGC TCACAAGTAATCAAGCAATTCCTCCAATGGACTGGGAAGAGTATGTTTTTGAAATATCGTCTGACATAATGAAGGAGCAGAGTCCTAAAAGATTGTTTCA GGTTCGAGGGAAGCTGTATGAATTACTTATCAACTGTATTCCTCCCGAGATAATATTGAAGAGACTTCTTTATGAGTTGTTGAGGAAATTGGACGAGGAG TTAAAGCATGAGGTTTGTCATTGGGCTGCATATTATGAACATAGAATGCGACAGGGGCAGAAAGCCATATTTCACCTGGAAGGTATTGTCAGACACAAAT TTACAGTGTTGTTGATTTTACTCATTCAAATTGTGTGTTTGTGGTCTCTGTTGGATCGTAAGAAGTTTGTCATGGATTTGAATGTATGCAGCATTCGTGG CGAAATTCATGAGCATATACAAGGCTTTCCTGGTAGCAACATTCGGGTGATACGTCATCAGAGCGGATTATCCTTTTTCTGGGTGAATGAACAGCAATGT TACGGAATTGCAGATCAAGCGAGCCTTTGGGAGAAGGATCTCTCACTGGTGTCAAAGTCGGAATTTTCGTGCTGTAATTTCTTCTGTAGTTTATGGTTAT CAACCAACCGGTCTTGGATTGCAACCGAGTAA
AA sequence Show only first row Show all	>Lus10043248 pacid=23168338 polypeptide=Lus10043248 locus=Lus10043248.g ID=Lus10043248.BGIv1.0 annot-version=v1.0 MNEHLKYPPSVIDPSIELKEVAEQDCPHLLFYGPSGAGKKTLIMALLRQIFGPGAEKVKVENRTWKVDAGSRTIDLELTTLASANHVELSPSDAGFQDRY IVQEIIKEMARNRPIDTNGKKSYKVIVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIRSRCLNVRINAPSEEQIVRVLEFIGKKEGLD IPSGFAGRVAEKSNRSLRRAILSFETCRVQQSPLTSNQAIPPMDWEEYVFEISSDIMKEQSPKRLFQVRGKLYELLINCIPPEIILKRLLYELLRKLDEE LKHEVCHWAAYYEHRMRQGQKAIFHLEGIVRHKFTVLLILLIQIVCLWSLLDRKKFVMDLNVCSIRGEIHEHIQGFPGSNIRVIRHQSGLSFFWVNEQQC YGIADQASLWEKDLSLVSKSEFSCCNFFCSLWLSTNRSWIATE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10043248 [exp]	0	1
AT1G80880			Tetratricopeptide repeat (TPR)...		Lus10041669 [exp]	2.4	0.8161
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10032315 [exp]	3.2	0.8371
AT3G23620			Ribosomal RNA processing Brix ...		Lus10035575 [exp]	5.6	0.8462
AT5G40410			Tetratricopeptide repeat (TPR)...		Lus10005638 [exp]	8.1	0.7339
AT2G01640			unknown protein		Lus10027869 [exp]	9.1	0.7509
AT4G29510		ATPRMT1B, ATPRM...	PROTEIN ARGININE METHYLTRANSFE...		Lus10008577 [exp]	10.6	0.7803
AT5G62300			Ribosomal protein S10p/S20e fa...		Lus10027194 [exp]	11.3	0.8099
AT4G34670			Ribosomal protein S3Ae (.1)		Lus10041191 [exp]	14.7	0.8174
AT2G44860			Ribosomal protein L24e family ...		Lus10009403 [exp]	14.8	0.8069
AT1G34030			Ribosomal protein S13/S18 fami...		Lus10034179 [exp]	16.4	0.8232

Compare expression of checked genes

Lus10043248 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.