Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15460 701 / 0 ATBOR4 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) AT1G74810 673 / 0 BOR5 HCO3- transporter family (.1) AT4G32510 656 / 0 HCO3- transporter family (.1) AT5G25430 653 / 0 HCO3- transporter family (.1) AT2G47160 584 / 0 AtBOR1, BOR1 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) AT3G62270 577 / 0 HCO3- transporter family (.1) AT3G06450 537 / 0 HCO3- transporter family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019443 [exp] 1048 / 0 AT1G15460 888 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10008083 [exp] 697 / 0 AT1G15460 932 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10013116 [exp] 692 / 0 AT1G15460 932 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Lus10032651 [exp] 568 / 0 AT3G62270 1048 / 0.0 HCO3- transporter family (.1) Lus10038060 [exp] 560 / 0 AT3G62270 1155 / 0.0 HCO3- transporter family (.1) Lus10043101 [exp] 534 / 0 AT2G47160 951 / 0.0 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) Lus10009995 [exp] 528 / 2e-178 AT3G62270 1054 / 0.0 HCO3- transporter family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G154700 [exp] 747 / 0 AT1G15460 894 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.001G174500 [exp] 725 / 0 AT1G15460 959 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.003G059700 [exp] 722 / 0 AT1G15460 964 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.018G031700 [exp] 720 / 0 AT1G15460 947 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.006G249800 [exp] 699 / 0 AT1G15460 924 / 0.0 ARABIDOPSIS THALIANA REQUIRES HIGH BORON 4, HCO3- transporter family (.1) Potri.008G100300 [exp] 579 / 0 AT3G62270 1091 / 0.0 HCO3- transporter family (.1) Potri.012G081800 [exp] 562 / 0 AT3G62270 1067 / 0.0 HCO3- transporter family (.1) Potri.002G191000 [exp] 560 / 0 AT2G47160 1152 / 0.0 REQUIRES HIGH BORON 1, HCO3- transporter family (.1.2) Potri.014G116000 [exp] 560 / 0 AT3G62270 1113 / 0.0 HCO3- transporter family (.1) Potri.015G077600 [exp] 554 / 0 AT3G62270 1068 / 0.0 HCO3- transporter family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00955 [flax] [poplar] HCO3_cotransp HCO3- transporter family
Representative CDS sequence Show only first row Show all	>Lus10043299 pacid=23167950 polypeptide=Lus10043299 locus=Lus10043299.g ID=Lus10043299.BGIv1.0 annot-version=v1.0 ATGAAAGGTCTAATTCAGGACTTCAAAGGAAGAAAAGCTGTCTATGGCGATGACTGGGCCAATGCTTTCGCCGCCGGTCCCAGGATATTCGCTCCAATCG CATACATCTTCTTTGCGTCTGCTCTTCCTGTCATTGCTTTCGGCGAGCAACTCAGCCGTGAAACAGATGGATGCCTAAGCACTGTGGAGACATTAGCTTC AACAGCTCTATGCGGAATAATTCATTCGTTAATTGGAGGGCAGCAATTGTTGGTTGTGGGAGTTGCAGAACCAACGGTGATAATGTACCATTACCTTTAC TCTTTTGCCAAAACATCAGACTCTGTTGGGAAAAAGCTGTACCTCGCTTGGGCTGGATGGGTGTGTGTGTGGACGGCTCTCATGCTTATCCTGCTAGCTG TATTCGACGCTTGCAACATCCTCAACAAGTTCACAAGGCTTGCAGGGGAGACATTTGGGATGTTGATTTCTGTTCTCTTCTTTCAGCAGGCCATCAAGGG AATGGTGGGAGAGTTCAGCCTTGTAGAGCATGAGGACACTAATCGCCAGACAGCAGTTTCCAATGGCTCTCTAAAGAGTAGAAAGGCAAGGTCTTGGGAT TATGGCACCGGATGGTTTCGGAGCCTCATCGCAGATTATGGTGTCCCTCTAGTCGTCATGTTCTGGGCAGCATTGTCACTAACCATCCCTAGCCAGGTTC CAGAAGGCATTCCACGTCGCCTTCAGACTCCTCTCCCTTGGGAACCTGCTTCCATGTCTCATTGGACTGTCTTCATGGATATGGGAAAAGTGCCACCAGG GTTCATCCTGGCTGCAATCATACCAGCAGTGATGACTTTGATATGTGGACTGCTTGGGCTTCCACCTTGCAACGGAGTCCTCCCACAGTCTCCTATGCAC ACCAAGAGTCTCTCAGTTCTCAGTGGACAGCTGATAAGGAAGAAGATGGTGCAAACAGCCAAGGAAAGCATGATGCAAAAAGATAGCAAATCCAAGGTTT ACGGGAAAATGGAGGAGGCTTTTGTCCAAATGGATGGAACTGCAGGACCTTCAGCAGCAAAGGAGCTGAAGAACTTGAAAGAAGCAGTGATGAGATCTGG AAATGAGGGAAGTAAAGATGGTGGTGAAAGCTTTGACCCAGAGAAGATTGATGCTTACTTGCCAGTGAGGGTAATTGAGCAAAGATTTAGCAACTTCTTG CAGTCTCTTCTTATTGGGTTATCACTTCTGGCGATGCCAGTCATCAAAAAGATCCCAACTTCAGTACTTTGGGGTTACTTTGCTTACATGGCAATTGACA GTCTCCCTGGAAACCAGTTCTGGGAAAGGCTCGTCATGCTCCTCATTGCTCCTAGCAGACGCCACAAGATTATGGAAAAGCCTCATGCATCATTCGTGGA GACTGTACCGTTCAAACAAATAGCAAAGTTCACAACATTCCAGATAATTTACTTCTTGATCTGCTTTGGGGTGACATGGATTCCCATTGCTGGAATATTG TTCCCACTGCCATTCTTCTTCCTGATAAGCATTAGAGAAAAAATATTGCCAAAGTTCTTCCAACCTCAACACCTGAAAGAGATGGATGGTGTTGAGTATG AAGAAGTTGAAGGCGACCCATTACGCAGCCGTTCCATGTCTTTAAGGCAGAGGATCAGTTCGAGAGATGGAGCTGGATGTGAGCCACAAGATGCTGAGAT ATTCGATGAGCTCACCACCGGAAGAGGAGAGCTGAGGCTACGATCTACAAGTGTTAGCCAGGAAAGGAGCAACCAGGCAAGATGA
AA sequence Show only first row Show all	>Lus10043299 pacid=23167950 polypeptide=Lus10043299 locus=Lus10043299.g ID=Lus10043299.BGIv1.0 annot-version=v1.0 MKGLIQDFKGRKAVYGDDWANAFAAGPRIFAPIAYIFFASALPVIAFGEQLSRETDGCLSTVETLASTALCGIIHSLIGGQQLLVVGVAEPTVIMYHYLY SFAKTSDSVGKKLYLAWAGWVCVWTALMLILLAVFDACNILNKFTRLAGETFGMLISVLFFQQAIKGMVGEFSLVEHEDTNRQTAVSNGSLKSRKARSWD YGTGWFRSLIADYGVPLVVMFWAALSLTIPSQVPEGIPRRLQTPLPWEPASMSHWTVFMDMGKVPPGFILAAIIPAVMTLICGLLGLPPCNGVLPQSPMH TKSLSVLSGQLIRKKMVQTAKESMMQKDSKSKVYGKMEEAFVQMDGTAGPSAAKELKNLKEAVMRSGNEGSKDGGESFDPEKIDAYLPVRVIEQRFSNFL QSLLIGLSLLAMPVIKKIPTSVLWGYFAYMAIDSLPGNQFWERLVMLLIAPSRRHKIMEKPHASFVETVPFKQIAKFTTFQIIYFLICFGVTWIPIAGIL FPLPFFFLISIREKILPKFFQPQHLKEMDGVEYEEVEGDPLRSRSMSLRQRISSRDGAGCEPQDAEIFDELTTGRGELRLRSTSVSQERSNQAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15460		ATBOR4	ARABIDOPSIS THALIANA REQUIRES ...		Lus10043299 [exp]	0	1
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Lus10006269 [exp]	1.0	0.8424
AT3G13170		ATSPO11-1	Spo11/DNA topoisomerase VI, su...		Lus10016612 [exp]	2.8	0.8075
AT1G79440		ENF1, SSADH1, A...	SUCCINIC SEMIALDEHYDE DEHYDROG...		Lus10002132 [exp]	6.0	0.7133
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	8.1	0.7966
AT4G32050			neurochondrin family protein (...		Lus10032403 [exp]	9.6	0.7931
AT2G33630			NAD(P)-binding Rossmann-fold s...		Lus10013202 [exp]	19.1	0.7210
AT4G28450			nucleotide binding;protein bin...		Lus10037378 [exp]	19.7	0.7423
AT3G04480			endoribonucleases (.1)		Lus10027962 [exp]	21.0	0.7740
AT2G01905		CYCJ18	cyclin J18 (.1)		Lus10031940 [exp]	23.0	0.7375
AT4G18470		SNI1	SUPPRESSOR OF NPR1-1, INDUCIBL...		Lus10025429 [exp]	29.3	0.7540

Compare expression of checked genes

Lus10043299 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.