Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03500 266 / 3e-84 GARP Homeodomain-like superfamily protein (.1) AT1G25550 166 / 3e-47 GARP myb-like transcription factor family protein (.1) AT1G68670 152 / 1e-41 GARP myb-like transcription factor family protein (.1) AT4G37180 116 / 2e-28 GARP Homeodomain-like superfamily protein (.1.2) AT1G13300 113 / 1e-27 GARP HRS1 HYPERSENSITIVITY TO LOW PI-ELICITED PRIMARY ROOT SHORTENING 1, myb-like transcription factor family protein (.1) AT1G49560 106 / 4e-25 GARP Homeodomain-like superfamily protein (.1) AT3G25790 105 / 1e-24 GARP myb-like transcription factor family protein (.1) AT4G28610 76 / 1e-14 GARP ATPHR1, PHR1 phosphate starvation response 1 (.1) AT2G40970 72 / 4e-14 GARP MYBC1 Homeodomain-like superfamily protein (.1) AT5G05090 71 / 1e-13 GARP Homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019452 [exp] 426 / 6e-144 AT2G03500 231 / 3e-69 Homeodomain-like superfamily protein (.1) Lus10021699 [exp] 160 / 1e-44 AT1G25550 284 / 6e-94 myb-like transcription factor family protein (.1) Lus10035043 [exp] 156 / 4e-43 AT1G68670 281 / 7e-93 myb-like transcription factor family protein (.1) Lus10020995 [exp] 150 / 1e-40 AT2G03500 173 / 1e-49 Homeodomain-like superfamily protein (.1) Lus10023857 [exp] 136 / 1e-35 AT2G03500 159 / 2e-44 Homeodomain-like superfamily protein (.1) Lus10034280 [exp] 119 / 8e-30 AT1G25550 266 / 3e-87 myb-like transcription factor family protein (.1) Lus10012056 [exp] 119 / 2e-29 AT2G03500 164 / 2e-47 Homeodomain-like superfamily protein (.1) Lus10009334 [exp] 115 / 9e-29 AT4G37180 213 / 5e-67 Homeodomain-like superfamily protein (.1.2) Lus10019639 [exp] 112 / 1e-27 AT4G37180 206 / 4e-64 Homeodomain-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G074200 [exp] 310 / 8e-101 AT2G03500 298 / 6e-97 Homeodomain-like superfamily protein (.1) Potri.006G155200 [exp] 301 / 2e-97 AT2G03500 259 / 8e-82 Homeodomain-like superfamily protein (.1) Potri.004G144800 [exp] 171 / 4e-48 AT2G03500 189 / 2e-55 Homeodomain-like superfamily protein (.1) Potri.009G106600 [exp] 167 / 9e-47 AT2G03500 196 / 2e-58 Homeodomain-like superfamily protein (.1) Potri.008G117500 [exp] 157 / 3e-43 AT1G68670 298 / 4e-99 myb-like transcription factor family protein (.1) Potri.010G128900 [exp] 151 / 4e-41 AT1G25550 277 / 7e-91 myb-like transcription factor family protein (.1) Potri.007G039400 [exp] 144 / 1e-38 AT4G37180 216 / 2e-67 Homeodomain-like superfamily protein (.1.2) Potri.005G134600 [exp] 134 / 3e-35 AT4G37180 214 / 1e-66 Homeodomain-like superfamily protein (.1.2) Potri.006G034900 [exp] 71 / 3e-13 AT3G10760 271 / 8e-90 Homeodomain-like superfamily protein (.1) Potri.001G146200 [exp] 72 / 4e-13 AT4G18020 447 / 2e-152 PSEUDO-RESPONSE REGULATOR 2, CheY-like two-component responsive regulator family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10043304 pacid=23167988 polypeptide=Lus10043304 locus=Lus10043304.g ID=Lus10043304.BGIv1.0 annot-version=v1.0 ATGGCATCTCCATCTGAACTAAGCTTAGATTGCAAACCCCACAGCCATTCTTTGCTTCTGAAATCTTTCTCCGACCAGATCGTTGCTAATAACGCCCCCC CTCAGGATGATCAGAAACACAAGCTCGAAGAGTTTCTATCTCGACTCGAGGAGGAAAGGTTCAAGATCGATGCTTTCAAGCGGGAGCTCCCTCTTTGCAT GCAACTACTCACTAATGCTATGGAAAGCTCGAGGCAACAACTCGAAGCATACAGGGGATCAAGGCAGCCAGCAGCTGTAGTACTGGAAGAGTTCATACCC ATGAAGAACACAGTAGCACCACCACCATCATCCTCTGATCAAATAGTCATGTCGATGGAGAACAAGGCCAACTGGATGACCACAGCTCAGCTATGGAGCC AAGACACCAAGCCTGCTCTTCACCACGAAAAAGATGAAACCTTTCGTCAAGATAACAACAATTCGACGATGGGTTTCAGCGTAATTACAGAGAGGAGGAA TTCATGTAATGGCAGTACTGGAGCTTTCCTTCCATTCTCCAAAGAGAGGAATAATAATGACTCTAACTGCACTTTGGCACTTGCGGCCTCGACAGACACT AGCAACAAATTAGATCATCGTGAGGAGGAAGAGGAAAAGATCAAATGTTCTGATCAGCCCGTCAACATTATTAATGGGTTTTCATCAGAGAGTGACGGCG GTGGGATTAATGTAACGGCGGCTGAGGCGGCAGCGGCGGCAGGAGGAAGCAATAACAGTCAGAGGAAGGCTAGGAGATGTTGGTCGCCTGACTTGCACAG GAGATTCGTGAATGCTCTTCAAATGCTTGGTGGCTCCCAAGTGGCTACACCAAAGCAAATCAGGGAACTGATGAAGGTCGATGGTTTGACCAACGATGAA GTTAAAAGCCACCTCCAGAAATATAGGCTTCACACAAGGCGACCAAGTCCAAGCCCACAGGCATCAGGGGGCCCGCCTCCCCAGCTCGTTGTCCTCGGCG GAATCTGGGTCCCACCAGAATACGCCGCCTCTCACGGCGGTGCCCACGCTTTCTACGGCGCCGCCACCGCTCACCCACCACCGCCTTCCCACTTCTACTC CGTTCCTCCTCCGCAAGATTACTACACTGCTGCCGGACTGCCGATGCAGGCTCTTCCTCCTCCTCATACTCCGCCAACGCTCTTCCTCCTCCTCATACTC CGCCAACGTCCCACCACCACCTCCACCACCACCACCAGATCCAGCTCTACAAGGCTTCTCCGTCGTCGCAGGCCCACAGCTCCGGACAGGATTCGGACGA CAGGGCAGCCGGGGACAGGTCGGAGAGCATTGAAGATGGGAAGTCGGAGAGCGGGAGCTGGAAAGCAGGGGAGAGCGGAGACAATGCTGGCGGCGATGGA GGAGAGAGAAAAGATAGAGAGGAATGCAATCGGAGAGAGATCACCCTCAAATTTTAACTCATAA
AA sequence Show only first row Show all	>Lus10043304 pacid=23167988 polypeptide=Lus10043304 locus=Lus10043304.g ID=Lus10043304.BGIv1.0 annot-version=v1.0 MASPSELSLDCKPHSHSLLLKSFSDQIVANNAPPQDDQKHKLEEFLSRLEEERFKIDAFKRELPLCMQLLTNAMESSRQQLEAYRGSRQPAAVVLEEFIP MKNTVAPPPSSSDQIVMSMENKANWMTTAQLWSQDTKPALHHEKDETFRQDNNNSTMGFSVITERRNSCNGSTGAFLPFSKERNNNDSNCTLALAASTDT SNKLDHREEEEEKIKCSDQPVNIINGFSSESDGGGINVTAAEAAAAAGGSNNSQRKARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVDGLTNDE VKSHLQKYRLHTRRPSPSPQASGGPPPQLVVLGGIWVPPEYAASHGGAHAFYGAATAHPPPPSHFYSVPPPQDYYTAAGLPMQALPPPHTPPTLFLLLIL RQRPTTTSTTTTRSSSTRLLRRRRPTAPDRIRTTGQPGTGRRALKMGSRRAGAGKQGRAETMLAAMEEREKIERNAIGERSPSNFNS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G03500	GARP		Homeodomain-like superfamily p...		Lus10043304 [exp]	0	1
AT2G24520		AHA5	H\(+\)-ATPase 5, H\(+\)-ATPase...		Lus10026224 [exp]	1.0	0.9715
AT1G10380			Putative membrane lipoprotein ...		Lus10036687 [exp]	2.0	0.9583
AT5G50290			unknown protein		Lus10042105 [exp]	3.0	0.9458
AT1G69850		NTL1, ATNRT1:2	nitrate transporter 1:2 (.1)		Lus10037217 [exp]	3.2	0.9326
AT1G75170			Sec14p-like phosphatidylinosit...		Lus10026020 [exp]	3.5	0.9313
AT4G26490			Late embryogenesis abundant (L...		Lus10032906 [exp]	6.0	0.9348
AT2G16230			O-Glycosyl hydrolases family 1...		Lus10012080 [exp]	6.5	0.9284
AT3G05620			Plant invertase/pectin methyle...		Lus10020677 [exp]	7.7	0.9410
AT5G50290			unknown protein		Lus10001236 [exp]	7.7	0.9158
AT1G60360			RING/U-box superfamily protein...		Lus10028063 [exp]	7.9	0.9358

Compare expression of checked genes

Lus10043304 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.