Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24710 653 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G53230 88 / 3e-18 ATPase, AAA-type, CDC48 protein (.1) AT5G20000 81 / 3e-16 RPT6A AAA-type ATPase family protein (.1) AT5G19990 81 / 3e-16 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT5G03340 81 / 5e-16 ATPase, AAA-type, CDC48 protein (.1) AT2G27600 79 / 9e-16 ATSKD1, VPS4, SKD1 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) AT3G56690 79 / 2e-15 CIP111 Cam interacting protein 111 (.1) AT3G19740 77 / 8e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50140 77 / 9e-15 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT5G58290 76 / 9e-15 RPT3 regulatory particle triple-A ATPase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019473 [exp] 837 / 0 AT4G24710 680 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10023018 [exp] 83 / 1e-16 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021441 [exp] 82 / 2e-16 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 82 / 4e-16 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10017762 [exp] 81 / 4e-16 AT5G19990 797 / 0.0 regulatory particle triple-A ATPase 6A (.1) Lus10020589 [exp] 79 / 1e-15 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10004891 [exp] 79 / 1e-15 AT2G27600 801 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Lus10013429 [exp] 80 / 2e-15 AT1G50140 1151 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10019537 [exp] 79 / 2e-15 AT2G27600 791 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G086400 [exp] 692 / 0 AT4G24710 712 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.015G084900 [exp] 686 / 0 AT4G24710 694 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.016G091600 [exp] 87 / 6e-18 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.010G237100 [exp] 86 / 6e-18 AT2G27600 702 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.006G125500 [exp] 86 / 1e-17 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.009G144300 [exp] 84 / 2e-17 AT2G27600 776 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.008G022216 [exp] 83 / 4e-17 AT2G27600 701 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.006G035000 [exp] 84 / 6e-17 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.004G184500 [exp] 82 / 1e-16 AT2G27600 740 / 0.0 VACUOLAR PROTEIN SORTING 4, SUPPRESSOR OF K+ TRANSPORT GROWTH DEFECT1, AAA-type ATPase family protein (.1) Potri.012G088200 [exp] 82 / 3e-16 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00004 [flax] [poplar] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Lus10043321 pacid=23168245 polypeptide=Lus10043321 locus=Lus10043321.g ID=Lus10043321.BGIv1.0 annot-version=v1.0 ATGGAGATCTCTGCGCCGAGCTCCGTCACTGAAACCCACATTTCCGACCAGAACGGCCCTCCGCTGCTCCCCGCACAAAATCCTCCTCCTCCTCCGTCTC TCTACGAAGACAAGTTTCTTGTTTCTGTTGAAGTTTGCTTAAAAGCTTCCAGCACTGCTCGGCCTCAGGACGTCTGCTCAGCGGTTGAAAGAATGCTGGA AAAGAGGAGCACGAGCTATATCGATGGACCGGTACCCGTGCCTATTGATGATCCTTTTCTTGTTGAGAACATTGAGAGGATATGTATATGTGATGCAGAT GAAGGGATAAAGAACCGTAGAATTCTCTTGTTCTGGCAAGTCAAACCTCTTGTTCACGTCTTTCAGCTTAGTGATGAGGGACCATGTGAAGAGCTAAGTG GAGATGGTCAACTCGCTAGCTTCAATGAATGGATTCTTCCTGCAACGGAATTTGATGGCTTGTGGGAAAGCTTGATTTATGAATCTGGTCTCAAGCAAAG GTTGTTGCGATATGCTGCAAGTGCGTTGCTCTTTACTGAAAAGGGTGTGGACCCTTTCCTCGTGTCCTGGAACCGCATTGTTCTTTTACATGGTCCTCCA GGTACTGGCAAGACGTCTTTATGCAAGGCCCTTGCTCAAAAGCTCTCAATACGGTTCAATTCCAGATATCCACAGTGCCAGCTGATTGAAGTCAACGCTC ATTCTCTGTTCAGCAAATGGTTCTCTGAAAGTGGCAAGTTGGTCGCTAAGCTTTTCCAGAAGATTCAAGAGATGGTAGAGGAAGACAACAATCTGGTATT TGTGTTGATTGATGAAGTTGAAAGCCTAGCTGCTGCTAGAAAAGCTGCTATATCAGGCTCTGAACCTTCAGACTCTATTCGGGTTGTGAATGCGTTACTA ACTCAGATGGACAGATTGAAATCTTCACCAAATGTGATTATTCTGACTACATCCAATATTACTGCCGCAATTGATATTGCATTTGTTGATCGAGCTGATA TTAAGGCATATGTTGGCCCTCCTACTCTTGAAGCTCGTTATGAGATTCTGAGATCTTGCATGCAAGAACTTATCCGAACCAGAATAGTATCAAATTTCCA GGGTTTTGACGACCTAAAGTTTCCAGATTATTCAACGTTGAATGAGAAATTAGGTGCACTTGATGTACAAGAAGCTCAAACACGCTCGTTGCTGCTGTAT AAACAATTGCTTGATGCTGCAGTGGCATGTGAGGGGTTGAGTGGTAGGTCACTGAGAAAGCTTCCATTTCTTGCACATGCATCTCTTTCAACTCCAGGCA GTAGTGACCCGACTAAGTTCTTAAGCACATTGATTAATACGGCAAGAAGGGAGCATTCTGAACTACTAGGTTCATGA
AA sequence Show only first row Show all	>Lus10043321 pacid=23168245 polypeptide=Lus10043321 locus=Lus10043321.g ID=Lus10043321.BGIv1.0 annot-version=v1.0 MEISAPSSVTETHISDQNGPPLLPAQNPPPPPSLYEDKFLVSVEVCLKASSTARPQDVCSAVERMLEKRSTSYIDGPVPVPIDDPFLVENIERICICDAD EGIKNRRILLFWQVKPLVHVFQLSDEGPCEELSGDGQLASFNEWILPATEFDGLWESLIYESGLKQRLLRYAASALLFTEKGVDPFLVSWNRIVLLHGPP GTGKTSLCKALAQKLSIRFNSRYPQCQLIEVNAHSLFSKWFSESGKLVAKLFQKIQEMVEEDNNLVFVLIDEVESLAAARKAAISGSEPSDSIRVVNALL TQMDRLKSSPNVIILTTSNITAAIDIAFVDRADIKAYVGPPTLEARYEILRSCMQELIRTRIVSNFQGFDDLKFPDYSTLNEKLGALDVQEAQTRSLLLY KQLLDAAVACEGLSGRSLRKLPFLAHASLSTPGSSDPTKFLSTLINTARREHSELLGS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24710			P-loop containing nucleoside t...		Lus10043321 [exp]	0	1
AT4G25540		ATMSH3, MSH3	homolog of DNA mismatch repair...		Lus10005743 [exp]	2.4	0.9287
AT1G01110		IQD18	IQ-domain 18 (.1.2)		Lus10010104 [exp]	2.8	0.9290
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Lus10008103 [exp]	3.6	0.9377
AT5G03670			unknown protein		Lus10035565 [exp]	7.3	0.9151
AT2G36400	GRF	ATGRF3	growth-regulating factor 3 (.1...		Lus10023877 [exp]	7.5	0.9271
AT5G24330		SDG34, ATXR6	SET DOMAIN PROTEIN 34, ARABIDO...		Lus10016526 [exp]	8.7	0.9238
AT5G20850		ATRAD51	RAS associated with diabetes p...		Lus10027654 [exp]	8.7	0.9028
AT4G12540			unknown protein		Lus10025820 [exp]	9.5	0.9146
AT3G52270			Transcription initiation facto...		Lus10040084 [exp]	11.0	0.8833
AT1G09760		U2A'	U2 small nuclear ribonucleopro...		Lus10028659 [exp]	12.0	0.9191

Compare expression of checked genes

Lus10043321 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.