Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G44750 421 / 7e-147 ATPUP11 purine permease 11 (.1.2.3) AT4G08700 331 / 2e-111 ATPUP13 Drug/metabolite transporter superfamily protein (.1) AT5G41160 312 / 2e-104 ATPUP12 ARABIDOPSIS THALIANA PURINE PERMEASE 12, purine permease 12 (.1) AT4G18220 298 / 5e-99 Drug/metabolite transporter superfamily protein (.1) AT4G18210 298 / 3e-98 ATPUP10 purine permease 10 (.1) AT4G18195 256 / 1e-81 ATPUP8, AT4G18200 ARABIDOPSIS THALIANA PURINE PERMEASE 8, purine permease 8 (.1) AT4G18205 241 / 4e-76 AT4G18200 Nucleotide-sugar transporter family protein (.1) AT4G18190 237 / 1e-74 ATPUP6 purine permease 6 (.1) AT4G18197 236 / 3e-74 PEX17, ATPUP7, AT4G18200 PEROXIN 17, ARABIDOPSIS THALIANA PURINE PERMEASE 7, purine permease 7 (.1) AT1G28220 183 / 4e-54 ATPUP3 purine permease 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019503 [exp] 582 / 0 AT1G44750 452 / 1e-159 purine permease 11 (.1.2.3) Lus10026130 [exp] 270 / 3e-87 AT4G18210 382 / 2e-131 purine permease 10 (.1) Lus10008689 [exp] 267 / 3e-86 AT4G18210 382 / 3e-131 purine permease 10 (.1) Lus10040118 [exp] 263 / 1e-84 AT4G18210 336 / 2e-113 purine permease 10 (.1) Lus10030927 [exp] 263 / 1e-84 AT4G18210 336 / 1e-113 purine permease 10 (.1) Lus10028132 [exp] 246 / 2e-77 AT4G18220 361 / 4e-123 Drug/metabolite transporter superfamily protein (.1) Lus10038492 [exp] 233 / 6e-73 AT4G18210 344 / 3e-116 purine permease 10 (.1) Lus10020950 [exp] 167 / 8e-48 AT1G28220 448 / 3e-158 purine permease 3 (.1) Lus10015906 [exp] 154 / 2e-43 AT1G28220 406 / 2e-142 purine permease 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G043900 [exp] 453 / 2e-159 AT1G44750 434 / 2e-152 purine permease 11 (.1.2.3) Potri.001G147600 [exp] 319 / 2e-106 AT4G18210 315 / 7e-105 purine permease 10 (.1) Potri.001G352100 [exp] 303 / 4e-100 AT4G18210 398 / 1e-137 purine permease 10 (.1) Potri.001G352200 [exp] 285 / 3e-93 AT4G18220 315 / 1e-105 Drug/metabolite transporter superfamily protein (.1) Potri.005G160300 [exp] 171 / 2e-49 AT1G28220 413 / 8e-145 purine permease 3 (.1) Potri.002G099600 [exp] 149 / 3e-41 AT1G28220 229 / 2e-72 purine permease 3 (.1) Potri.006G184900 [exp] 139 / 3e-37 AT2G24220 404 / 6e-141 purine permease 5 (.1.2) Potri.003G156900 [exp] 125 / 3e-32 AT1G30840 323 / 4e-108 purine permease 4 (.1.2) Potri.001G074100 [exp] 114 / 2e-28 AT1G30840 303 / 5e-101 purine permease 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0184 [flax] [poplar] DMT PF03151 [flax] [poplar] TPT Triose-phosphate Transporter family
Representative CDS sequence Show only first row Show all	>Lus10043350 pacid=23167933 polypeptide=Lus10043350 locus=Lus10043350.g ID=Lus10043350.BGIv1.0 annot-version=v1.0 ATGGCAACGCCAGCCCTTGTGATTAACCTCAATGGAAATATTGGATGGATACTTATATCAGTGTTTTCGTCTTTATGTACAGATAATCAGGAACCGATCC TGAGCAAGAATAGCAACACAGGGCAGCCACCGTTACTTAAGAAACTCAAACGCTGGCAATGGTGGCTTCTAGTGTCTATCAACATCTTCTTCCTCGTTGC AGGCCAGTGTGCTGCTGTTCTCCTTGGAAGATTCTACTATGACCAGGGTGGGAACAGCAAATGGCTGGCAACTCTTGTTCAAACTGCTGCCTTCCCAATT CTCTACATCCCATTCCTGCTAATTCCTTCTTCTAAAGAGGAGACTTCAAATCCCACCTCATCATCATCCTCTTCTTCACCATCCCTCAAAGTTCTTGCTT CCATCTACTTCGTCCTCGGAGTAATCATAGCTTGTGACAACATGCTCTACTCCATCGGCCTACTCCACCTCTCAGCTTCCACCTACTCCTTGATATGCGC TTCCCAATTGGCATTCAACGCTATCTTCTCCTACTTCCTCAATTCGCAAAAATTCACTTCCTTAATCCTCAACTCCGTAGCCATGCTCTCCTTCTCCGCC GCTCTCATAGCAATGAATGACGACTCCAACGACGAACCATCGGGGAGATCCAAGTTGAAGTACGCAATTGGTTTCCTCTCCACATTGGCTGCTTCGGCAT TGTACTCACTCATTCTCTCCCTGATGCAGCTCTCCTTTCAGAGGGTCATAAAGAAAGAGACTTTCGCCGTGGTGTTGGAGATGCAGATCTACACATCTCT TGTCGCGACATGTGTTGCCACTGTAGGTCTCTTTGGGAGCGGGGAGTGGAAGACGCTGCACGGGGAAATGGGAAGTTACGGCAAGGGTAGTGCTTCGTAC GTGCTGACGCTGGTTTGGACGGCGGTGACGTGGCAGGTTTGTTCTGTCGGCGTGGTGGGTCTGATATTTGTGGTGTCGTCGTTGTTCTCAAATGTGATAA GCACGGTGGCGTTGGCCGTATCTCCGATCTCGGCGGTGATCGTTTTCGGGGACAAGATGAATGGGGTGAAGGCGATTGCATTGTTGATGGCAGTGTGGGG GTTTGGTTGTTATAGTCGGCAGAACTATGAGGATGAACGTGAGATTAGGAAGACAGCAGAGGACGCTGCTGCTGCGGAAGCTCGCGGTGGTCATTTGTGC TAA
AA sequence Show only first row Show all	>Lus10043350 pacid=23167933 polypeptide=Lus10043350 locus=Lus10043350.g ID=Lus10043350.BGIv1.0 annot-version=v1.0 MATPALVINLNGNIGWILISVFSSLCTDNQEPILSKNSNTGQPPLLKKLKRWQWWLLVSINIFFLVAGQCAAVLLGRFYYDQGGNSKWLATLVQTAAFPI LYIPFLLIPSSKEETSNPTSSSSSSSPSLKVLASIYFVLGVIIACDNMLYSIGLLHLSASTYSLICASQLAFNAIFSYFLNSQKFTSLILNSVAMLSFSA ALIAMNDDSNDEPSGRSKLKYAIGFLSTLAASALYSLILSLMQLSFQRVIKKETFAVVLEMQIYTSLVATCVATVGLFGSGEWKTLHGEMGSYGKGSASY VLTLVWTAVTWQVCSVGVVGLIFVVSSLFSNVISTVALAVSPISAVIVFGDKMNGVKAIALLMAVWGFGCYSRQNYEDEREIRKTAEDAAAAEARGGHLC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10043350 [exp]	0	1
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Lus10028546 [exp]	1.4	0.8177
AT1G44750		ATPUP11	purine permease 11 (.1.2.3)		Lus10019503 [exp]	1.7	0.7701
AT3G54950		pPLAIIIbeta, PL...	patatin-related phospholipase ...		Lus10041402 [exp]	5.9	0.7259
AT5G16530		PIN5	PIN-FORMED 5, Auxin efflux car...		Lus10020193 [exp]	6.2	0.7091
AT1G06920	OFP	ATOFP4, OFP4	ARABIDOPSIS THALIANA OVATE FAM...		Lus10014164 [exp]	6.9	0.7249
AT3G13850	AS2	LBD22	LOB domain-containing protein ...		Lus10013510 [exp]	8.4	0.6654
AT3G23000		PKS7, ATSRPK1, ...	SNF1-RELATED PROTEIN KINASE 3....		Lus10021892 [exp]	10.0	0.6937
AT1G64700			unknown protein		Lus10001663 [exp]	10.6	0.7747
AT1G67340			HCP-like superfamily protein w...		Lus10011362 [exp]	15.0	0.7081
AT4G24050			NAD(P)-binding Rossmann-fold s...		Lus10017308 [exp]	15.5	0.6747

Compare expression of checked genes

Lus10043350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.