Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09770 416 / 4e-141 MYB ATCDC5, AtMYBCDC5 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1) AT5G02320 74 / 7e-15 MYB MYB3R-5, ATMYB3R5 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) AT5G11510 73 / 2e-14 MYB ATMYB3R-4, AtMYB3R4 myb domain protein 3R4, myb domain protein 3r-4 (.1.2) AT3G18100 72 / 3e-14 MYB ATMYB4R1 myb domain protein 4r1 (.1.2.3) AT4G33450 69 / 7e-14 MYB ATMYB69 myb domain protein 69 (.1) AT5G40360 69 / 2e-13 MYB ATMYB115 myb domain protein 115 (.1) AT1G17950 68 / 2e-13 MYB AtMYB52, BW52, MYB52 myb domain protein 52 (.1) AT3G27920 67 / 3e-13 MYB GL1, ATMYB0, AtGL1 GLABRA 1, myb domain protein 0 (.1) AT3G09370 69 / 4e-13 MYB ATMYB3R-3, ATMYB3R3 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) AT2G02820 67 / 9e-13 MYB ATMYB88 myb domain protein 88 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034133 [exp] 451 / 2e-153 AT1G09770 1207 / 0.0 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1) Lus10031900 [exp] 72 / 3e-14 AT1G17950 220 / 2e-70 myb domain protein 52 (.1) Lus10031326 [exp] 72 / 3e-14 AT1G17950 219 / 3e-70 myb domain protein 52 (.1) Lus10024394 [exp] 71 / 1e-13 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10025351 [exp] 71 / 1e-13 AT3G09370 456 / 8e-157 myb domain protein 3R3, myb domain protein 3r-3 (.1.2) Lus10022256 [exp] 69 / 2e-13 AT3G27785 175 / 2e-50 PLANT GROWTH ACTIVATOR 37, myb domain protein 118 (.1) Lus10011687 [exp] 69 / 3e-13 AT4G32730 502 / 3e-158 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10038623 [exp] 69 / 4e-13 AT4G32730 376 / 3e-118 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Lus10022136 [exp] 69 / 5e-13 AT4G32730 682 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G018400 [exp] 434 / 4e-146 AT1G09770 1168 / 0.0 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1) Potri.013G046300 [exp] 434 / 1e-145 AT1G09770 1131 / 0.0 ARABIDOPSIS THALIANA MYB DOMAIN CELL DIVISION CYCLE 5, ARABIDOPSIS THALIANA CELL DIVISION CYCLE 5, cell division cycle 5 (.1) Potri.006G085600 [exp] 77 / 6e-16 AT5G02320 477 / 9e-164 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3R5, myb domain protein 3r-5 (.1.2) Potri.018G038000 [exp] 73 / 2e-14 AT4G32730 748 / 0.0 C-MYB-LIKE TRANSCRIPTION FACTOR 3R-1, ARABIDOOSIS THALIANA MYB DOMAIN PROTEIN 3R1, Homeodomain-like protein (.1.2) Potri.012G039400 [exp] 71 / 3e-14 AT1G17950 267 / 1e-90 myb domain protein 52 (.1) Potri.015G033600 [exp] 70 / 4e-14 AT1G17950 254 / 1e-85 myb domain protein 52 (.1) Potri.008G148400 [exp] 71 / 5e-14 AT2G02820 518 / 0.0 myb domain protein 88 (.1.2) Potri.007G106100 [exp] 69 / 1e-13 AT4G33450 207 / 2e-66 myb domain protein 69 (.1) Potri.017G017600 [exp] 69 / 1e-13 AT1G17950 243 / 3e-81 myb domain protein 52 (.1) Potri.006G241700 [exp] 69 / 3e-13 AT5G11510 696 / 0.0 myb domain protein 3R4, myb domain protein 3r-4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [flax] [poplar] HTH PF00249 [flax] [poplar] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10043451 pacid=23168344 polypeptide=Lus10043451 locus=Lus10043451.g ID=Lus10043451.BGIv1.0 annot-version=v1.0 ATGAGGATTATGATAAAAGGAGGTGTTTGGAAAAACACCGAGGATGAGATCCTTAAGGCCGCGGTTATGAAGTACGGCAAGAACCAGTGGGCTCGCATTT CTTCGCTTCTCGTTCGCAAATCTGCCAAGCAGTGTAAGGCTCGCTGGTACGAGTGGCTCGACCCTTCAATCAAAAAGACTGAGTGGACCAGAGAAGAGGA TGAGAAATTACTGCATCTTGCTAAGCTCATGCCTACACAATGGAGGACGATTGCACCGATTGTTGGGCGCACTCCTTCCCAGTGTCTTGAACGGTATGAG AAGCTCCTTGATGCAGCTTGTGTGAAGGATGATAACTATGAACCTAGCGACGACCCTCGCAAGCTGCGGCCAGGAGAAATTGATCCTAATCCTGAATCCA AGCCAGCGCGTCCTGATCCTGTTGATATGGATGAGGATGAGAAGGAAATGCTTTCTGAAGCACGAGCTAGGTTAGCTAACACTAGAGGTAAGAAGGCGAA AAGGAAAGCTAGAGAAAAACAGCTTGAAGAGGCTAGGAGGCTTGCTTCCTTACAGAAGAGAAGAGAGCTTAAAGCTGCTGGTATTGATGCGAGGCAGAGG AGAAGGAAAAGGAAAGGGATTGACTATAATTCAGAAATTCCCTTTGAAAAGAGGCCTCCTCCTGGCTTTTATGATGTTGCTGATGAAGATAGAACGGTAG AACAGCCAACGTTCGCAACCAACATAAAAAAGGAAGAGGTCAAAGTTGATGCTTCCTGCACCACAGATTTCTAA
AA sequence Show only first row Show all	>Lus10043451 pacid=23168344 polypeptide=Lus10043451 locus=Lus10043451.g ID=Lus10043451.BGIv1.0 annot-version=v1.0 MRIMIKGGVWKNTEDEILKAAVMKYGKNQWARISSLLVRKSAKQCKARWYEWLDPSIKKTEWTREEDEKLLHLAKLMPTQWRTIAPIVGRTPSQCLERYE KLLDAACVKDDNYEPSDDPRKLRPGEIDPNPESKPARPDPVDMDEDEKEMLSEARARLANTRGKKAKRKAREKQLEEARRLASLQKRRELKAAGIDARQR RRKRKGIDYNSEIPFEKRPPPGFYDVADEDRTVEQPTFATNIKKEEVKVDASCTTDF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09770	MYB	ATCDC5, AtMYBCD...	ARABIDOPSIS THALIANA MYB DOMAI...		Lus10043451 [exp]	0	1
AT5G11560			catalytics (.1)		Lus10022143 [exp]	1.0	0.9623
AT5G28740			Tetratricopeptide repeat (TPR)...		Lus10022347 [exp]	1.4	0.9585
AT2G23740	C2H2ZnF	AtCZS	nucleic acid binding;sequence-...		Lus10022482 [exp]	3.9	0.9514
AT2G32730			26S proteasome regulatory comp...		Lus10016681 [exp]	6.7	0.9381
AT2G32730			26S proteasome regulatory comp...		Lus10007140 [exp]	7.5	0.9394
AT4G27010		EMB2788	EMBRYO DEFECTIVE 2788, unknown...		Lus10041554 [exp]	9.2	0.9481
AT4G16340		SPK1	SPIKE1, guanyl-nucleotide exch...		Lus10013253 [exp]	9.5	0.9276
AT1G80070		EMB33, EMB177, ...	ABNORMAL SUSPENSOR 2, EMBRYO D...		Lus10011489 [exp]	9.8	0.9397
AT2G06510		ATRPA70A, ATRPA...	ARABIDOPSIS THALIANA RPA70-KDA...		Lus10033436 [exp]	10.6	0.9281
AT5G40480		EMB3012	embryo defective 3012 (.1)		Lus10022271 [exp]	11.4	0.9433

Compare expression of checked genes

Lus10043451 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.