Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G62890 823 / 0 Xanthine/uracil permease family protein (.1.2.3.4) AT5G49990 786 / 0 Xanthine/uracil permease family protein (.1) AT1G60030 746 / 0 ATNAT7 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) AT1G10540 672 / 0 ATNAT8 nucleobase-ascorbate transporter 8 (.1) AT1G49960 551 / 0 Xanthine/uracil permease family protein (.1) AT2G34190 540 / 0 Xanthine/uracil permease family protein (.1) AT1G65550 520 / 1e-180 Xanthine/uracil permease family protein (.1) AT2G05760 504 / 6e-175 Xanthine/uracil permease family protein (.1) AT2G26510 411 / 6e-138 PDE135 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2) AT5G25420 353 / 2e-117 Xanthine/uracil/vitamin C permease (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034125 [exp] 920 / 0 AT1G49960 944 / 0.0 Xanthine/uracil permease family protein (.1) Lus10004228 [exp] 875 / 0 AT5G62890 972 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10042138 [exp] 845 / 0 AT5G62890 932 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10010707 [exp] 784 / 0 AT5G62890 916 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10029191 [exp] 780 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Lus10033773 [exp] 556 / 0 AT1G49960 695 / 0.0 Xanthine/uracil permease family protein (.1) Lus10029238 [exp] 532 / 0 AT2G34190 926 / 0.0 Xanthine/uracil permease family protein (.1) Lus10036355 [exp] 523 / 0 AT1G65550 748 / 0.0 Xanthine/uracil permease family protein (.1) Lus10030014 [exp] 512 / 6e-178 AT2G05760 927 / 0.0 Xanthine/uracil permease family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G077400 [exp] 857 / 0 AT5G62890 914 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.015G072600 [exp] 848 / 0 AT5G62890 908 / 0.0 Xanthine/uracil permease family protein (.1.2.3.4) Potri.008G146400 [exp] 773 / 0 AT1G60030 881 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.010G095500 [exp] 765 / 0 AT1G60030 869 / 0.0 ARABIDOPSIS NUCLEOBASE-ASCORBATE TRANSPORTER 7, nucleobase-ascorbate transporter 7 (.1) Potri.009G086800 [exp] 578 / 0 AT1G49960 727 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G015100 [exp] 541 / 0 AT1G65550 559 / 0.0 Xanthine/uracil permease family protein (.1) Potri.004G058800 [exp] 538 / 0 AT2G34190 927 / 0.0 Xanthine/uracil permease family protein (.1) Potri.011G068200 [exp] 533 / 0 AT2G34190 928 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G157800 [exp] 521 / 0 AT2G05760 930 / 0.0 Xanthine/uracil permease family protein (.1) Potri.014G035800 [exp] 432 / 6e-146 AT2G26510 734 / 0.0 pigment defective embryo 135, Xanthine/uracil permease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [flax] [poplar] APC PF00860 [flax] [poplar] Xan_ur_permease Permease family
Representative CDS sequence Show only first row Show all	>Lus10043460 pacid=23168175 polypeptide=Lus10043460 locus=Lus10043460.g ID=Lus10043460.BGIv1.0 annot-version=v1.0 ATGGCTGGAGGGAAGGAAGAAACCCCACAACCACACCCACCCAAGGAGCAGCTTCCCAACATTTCTTACTGCATTACCAGCCCTCCTCCATGGCTGTTAT TGCATCAAGTGTATCTGGGTTTTCCCATTAATCAGCTGGAGAAAAGGATGATGGCTTCTTCAGGCCGAGGCTATACTACCTTGTTTCCCGCACTACCCTT TGGTGCTTTGGGGATACTTTTTCATTCCCACCGCTCCTCGCCTGCTCTCGTCTCACAGATGGGAGGTGGAAACAAAGAGAAGGCACAAGTGATCCAGACT CTGCTCTTTGTTGGTGGTTTGAACACATTGCTTCAGAGTATGTTTGGCACTAGGTTGCCTGCTGTTATTGGAGGATCTTACACCTTTGTCCCTACAACAA TCTCAATCATCCTCGCTGGTCGATTTAGTGACAACATAGACCCTGTCGAGAAATTTAAGAGGATTATGCGTGCAATCCAAGGTGCGCTAATTGTTGCTTC AACTCTCCAGATTGTTCTAGGATTCAGTGGTCTGTGGCGTAATGTTGCCAGGTTCCTAAGTCCCCTTTCCGCTGTTCCGTTGGTTGGCCTAGTTGGATTT GGCTTGTATGAACTTGGTTTTCCTGGGGTTGCCAAATGCATTGAGATTGGTCTACCAGAGCTTATCATATTGCTCTTTATTTCACAGTACATGCCTCATG TGATCAAATCAGGGAAACACATCTTTGATCGGTTTGCTGTCATATTTGCAATAGTAATTGTCTGGATATATGCACACTTACTCACTGTGGGTGGGGCTTA TAAAGGGGCAGCACCAAAGACGCAAGTAACTTGCCGCACGGATCGTGCAGGGTTGATTGATGCTGCACCATGGCAAGTTCTTCTCACTTTGAAGATTAGA GTTCCCTACCCCTTCCAATGGGGGGCACCTACTTTTGATGCTGGTGAAGCCTTCGCTATGATGATGGCTTCTTTTGTTGCTCTTGTAGAGTCTACTGGTG CCTTCATTGCTGTATCGAGGTATGCAAGTGCAACTCCCATGCCACCTTCTGTTCTCAGTCGTGGTGTTGGTTGGCAGGGAGTAGCCATTTTGCTTTCTGG ACTGTTTGGAACTGTGAATGGTTCATCTGTCTCCGTAGAGAATGCTGGTCTTTTGGCCCTAACAAGAGTTGGCAGCCGAAGGGTTGTTCAGATATCCGCT GGATTCATGATATTCTTCTCAATCCTTGGAAAATTTGGGGCAGTCTTTGCTTCAATTCCAGCTCCTATAATAGCAGCATTGTATTGCCTTTTCTTCGCAT ATGTGGGGGCTGGAGGTCTAAGCTTCTTGCAGTTCTGCAATCTGAACAGCTTCAGAACAAAGTTCATACTGGGTTTCTCCATATTCATAGGCTTGTCGAT TCCACAATACTTTAACGAGTACACTGCAATCAACGGCTATGGTCCAGTTCACACCAGAGCAAGATGGTTCAACGACATGGTAAATGTGCCCTTCTCCTCA GAAGCCTTTGTTGCCGGTGTCGTTGCGTACTTCCTAGACAACACATTGCACAAGAAAGACGGTGCCATCAGGAAAGACAGAGGAAAGCACTGGTGGGCAA AGTTCAAGACATTCAAGGGTGATACCAGAAGTGAAGAGTTCTACTCTTTGCCCTTCAACCTTAACAAATACTTCCCATCGGTCTGA
AA sequence Show only first row Show all	>Lus10043460 pacid=23168175 polypeptide=Lus10043460 locus=Lus10043460.g ID=Lus10043460.BGIv1.0 annot-version=v1.0 MAGGKEETPQPHPPKEQLPNISYCITSPPPWLLLHQVYLGFPINQLEKRMMASSGRGYTTLFPALPFGALGILFHSHRSSPALVSQMGGGNKEKAQVIQT LLFVGGLNTLLQSMFGTRLPAVIGGSYTFVPTTISIILAGRFSDNIDPVEKFKRIMRAIQGALIVASTLQIVLGFSGLWRNVARFLSPLSAVPLVGLVGF GLYELGFPGVAKCIEIGLPELIILLFISQYMPHVIKSGKHIFDRFAVIFAIVIVWIYAHLLTVGGAYKGAAPKTQVTCRTDRAGLIDAAPWQVLLTLKIR VPYPFQWGAPTFDAGEAFAMMMASFVALVESTGAFIAVSRYASATPMPPSVLSRGVGWQGVAILLSGLFGTVNGSSVSVENAGLLALTRVGSRRVVQISA GFMIFFSILGKFGAVFASIPAPIIAALYCLFFAYVGAGGLSFLQFCNLNSFRTKFILGFSIFIGLSIPQYFNEYTAINGYGPVHTRARWFNDMVNVPFSS EAFVAGVVAYFLDNTLHKKDGAIRKDRGKHWWAKFKTFKGDTRSEEFYSLPFNLNKYFPSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G62890			Xanthine/uracil permease famil...		Lus10043460 [exp]	0	1
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000617 [exp]	3.7	0.8194
AT3G23090			TPX2 (targeting protein for Xk...		Lus10022213 [exp]	5.1	0.8336
AT5G22400			Rho GTPase activating protein ...		Lus10020625 [exp]	5.1	0.7896
AT1G13970			Protein of unknown function (D...		Lus10026633 [exp]	5.7	0.8119
AT3G58600			Adaptin ear-binding coat-assoc...		Lus10000356 [exp]	7.0	0.8092
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025226 [exp]	7.7	0.7867
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033981 [exp]	15.0	0.7969
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028760 [exp]	16.0	0.7565
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10009930 [exp]	17.0	0.8113
AT5G07120		SNX2b	sorting nexin 2B (.1)		Lus10026403 [exp]	17.2	0.7926

Compare expression of checked genes

Lus10043460 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.