Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G19790 114 / 5e-30 AP2_ERF RAP2.11 related to AP2 11 (.1) AT2G47520 57 / 9e-10 AP2_ERF AtERF71, ERF71, HRE2 HYPOXIA RESPONSIVE ERF \(ETHYLENE RESPONSE FACTOR\) 2, Arabidopsis thaliana ethylene response factor 71, Integrase-type DNA-binding superfamily protein (.1) AT4G27950 58 / 1e-09 AP2_ERF CRF4 cytokinin response factor 4 (.1) AT4G11140 57 / 2e-09 AP2_ERF CRF1 cytokinin response factor 1 (.1) AT2G33710 56 / 6e-09 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT4G23750 56 / 7e-09 AP2_ERF TMO3, CRF2 TARGET OF MONOPTEROS 3, cytokinin response factor 2 (.1.2) AT5G53290 56 / 1e-08 AP2_ERF CRF3 cytokinin response factor 3 (.1) AT2G46310 54 / 3e-08 AP2_ERF CRF5 cytokinin response factor 5 (.1) AT5G13910 53 / 4e-08 AP2_ERF LEAFY PETIOLE (LEP) LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) AT5G25390 52 / 6e-08 AP2_ERF SHN3, SHN2 shine3, Integrase-type DNA-binding superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G220200 [exp] 357 / 1e-124 AT5G19790 164 / 1e-49 related to AP2 11 (.1) Potri.013G056700 [exp] 185 / 2e-57 AT5G19790 105 / 4e-27 related to AP2 11 (.1) Potri.019G036100 [exp] 170 / 2e-51 AT5G19790 98 / 3e-24 related to AP2 11 (.1) Potri.017G087800 [exp] 86 / 6e-19 AT5G19790 89 / 3e-20 related to AP2 11 (.1) Potri.008G091300 [exp] 81 / 5e-17 AT5G19790 80 / 5e-17 related to AP2 11 (.1) Potri.001G453100 [exp] 71 / 6e-14 AT5G19790 71 / 5e-14 related to AP2 11 (.1) Potri.002G153500 [exp] 70 / 1e-13 AT5G19790 79 / 6e-17 related to AP2 11 (.1) Potri.014G076702 [exp] 70 / 1e-13 AT5G19790 74 / 5e-15 related to AP2 11 (.1) Potri.011G148900 [exp] 66 / 3e-12 AT5G19790 65 / 5e-12 related to AP2 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013614 [exp] 105 / 3e-26 AT5G19790 148 / 6e-43 related to AP2 11 (.1) Lus10010652 [exp] 105 / 3e-26 AT5G19790 155 / 6e-46 related to AP2 11 (.1) Lus10013764 [exp] 96 / 1e-22 AT5G19790 132 / 6e-37 related to AP2 11 (.1) Lus10039171 [exp] 95 / 2e-22 AT5G19790 133 / 3e-37 related to AP2 11 (.1) Lus10001298 [exp] 83 / 1e-19 AT5G19790 118 / 1e-33 related to AP2 11 (.1) Lus10012703 [exp] 88 / 2e-19 AT5G19790 119 / 3e-31 related to AP2 11 (.1) Lus10036793 [exp] 84 / 5e-18 AT5G19790 115 / 4e-29 related to AP2 11 (.1) Lus10037137 [exp] 83 / 1e-17 AT5G19790 116 / 2e-29 related to AP2 11 (.1) Lus10030430 [exp] 82 / 2e-17 AT5G19790 115 / 1e-29 related to AP2 11 (.1) Lus10036556 [exp] 71 / 6e-15 AT5G19790 104 / 2e-28 related to AP2 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G004700.1 pacid=42792064 polypeptide=Potri.001G004700.1.p locus=Potri.001G004700 ID=Potri.001G004700.1.v4.1 annot-version=v4.1 ATGGAATACCATCAATTCCAAAAGCAGCCAAGAGGAGTCTCACACAGAAAATTCAAGGAGAGATGCTTAAGCAACACCTCCAAGAACAAGTTTGTTGGAG TTAGACAAAGGCCTTCAGGAAAATGGGTGGCAGAGATCAAAGACACCACACAGTCACAGAAGATCAGAATGTGGCTTGGGACCTTTGAGACAGCTGAAGA AGCTGCGCGAGCTTATGATGAAGCTGCCTGTCTTCTTCGTGGTTCGAATACTCGAACCAACTTTAACACTCATGTCCCCTCCAACTCTCCTGTTTCTATG AAAATTAGAAACCTTCTCAAACACAAAAAGAGTTTGAAACAGAACTCTTCCGCGACTTCCACCACAAAATCTACCATTAAAACCAGCACTATAGTTAGCA GCAAGAGTAGTTTCAATAGAAGCATTAATAGTTTTCTACCTAATGATAGCAACATTGATAGTTTTTCATCATCCATCGATAACCATAGTAGTTATTTTAA TGGCATCAAACAAGAAAACAAAGTGTTTGATAATGCATATAGGCCAGACTTGAGTGGCTGCTGCATTGGAGGGCTTGAACCGGTTACATCCCAATCCCAT CCCTCGTGCTCACTCCCGTCTGGGTTTGATCCTCAACTTCAATTTGTTCAAGAAGGAATGTGGCTGCCGAAGAATGCTGGTTTGTTGTCTGATACATCAT CTGGTCCAGAGTTAGCCGAATTCGAACGCATGAAGGTGGAAAGGCAGATATCAGCATCATTATATGCCATGAATGGAGGGAATGAGTACTTTGAGAATGC TAATGATTCAAGTGATGCTCTCTGGGATCTCCCTGCACTCTGCCAGTTGTTCTGTTCTAGTTGA
AA sequence Show only first row Show all	>Potri.001G004700.1 pacid=42792064 polypeptide=Potri.001G004700.1.p locus=Potri.001G004700 ID=Potri.001G004700.1.v4.1 annot-version=v4.1 MEYHQFQKQPRGVSHRKFKERCLSNTSKNKFVGVRQRPSGKWVAEIKDTTQSQKIRMWLGTFETAEEAARAYDEAACLLRGSNTRTNFNTHVPSNSPVSM KIRNLLKHKKSLKQNSSATSTTKSTIKTSTIVSSKSSFNRSINSFLPNDSNIDSFSSSIDNHSSYFNGIKQENKVFDNAYRPDLSGCCIGGLEPVTSQSH PSCSLPSGFDPQLQFVQEGMWLPKNAGLLSDTSSGPELAEFERMKVERQISASLYAMNGGNEYFENANDSSDALWDLPALCQLFCSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Potri.001G004700 [exp]	0	1
AT3G61250	MYB	LMI2, ATMYB17	LATE MERISTEM IDENTITY2, myb d...		Potri.012G140700 [exp]	1.73	0.8988
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Potri.008G008476 [exp]	2.00	0.9021
					Potri.001G233550 [exp]	7.21	0.8495
AT1G08860		BON3	BONZAI 3, Calcium-dependent ph...		Potri.013G029100 [exp]	9.11	0.7816	BON3.1
					Potri.001G426980 [exp]	9.48	0.8590
AT5G62880		ARAC10, ATRAC10...	RHO-RELATED PROTEIN FROM PLANT...		Potri.015G073000 [exp]	17.77	0.7499
AT4G27190			NB-ARC domain-containing disea...		Potri.001G446966 [exp]	17.94	0.8239
					Potri.005G150150 [exp]	18.00	0.8775
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.015G027700 [exp]	18.24	0.8091
AT1G67540			unknown protein		Potri.010G057800 [exp]	18.81	0.8656

Compare expression of checked genes

Potri.001G004700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.