Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13540 246 / 3e-81 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT3G61250 209 / 5e-66 MYB LMI2, ATMYB17 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) AT4G09460 198 / 1e-62 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT4G38620 199 / 2e-62 MYB AtMYB4 myb domain protein 4 (.1) AT3G02940 198 / 1e-61 MYB ATMYB107 myb domain protein 107 (.1) AT1G22640 196 / 1e-61 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT4G21440 198 / 4e-61 MYB ATMYB102, ATM4 A. THALIANA MYB 4, MYB-like 102 (.1) AT2G16720 195 / 9e-61 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT5G15310 194 / 6e-60 MYB ATMYB16, ATMIXTA myb domain protein 16 (.1.2) AT5G16770 194 / 7e-60 MYB ATMYB9 myb domain protein 9 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G219900 [exp] 501 / 0 AT3G13540 243 / 1e-79 myb domain protein 5 (.1) Potri.013G056400 [exp] 272 / 1e-90 AT3G13540 226 / 2e-73 myb domain protein 5 (.1) Potri.013G056500 [exp] 267 / 2e-88 AT3G13540 236 / 4e-77 myb domain protein 5 (.1) Potri.019G036160 [exp] 266 / 5e-88 AT3G13540 236 / 4e-77 myb domain protein 5 (.1) Potri.019G036340 [exp] 261 / 5e-86 AT3G13540 240 / 6e-79 myb domain protein 5 (.1) Potri.019G036400 [exp] 260 / 7e-86 AT3G13540 236 / 3e-77 myb domain protein 5 (.1) Potri.002G173900 [exp] 215 / 2e-68 AT3G13540 207 / 4e-66 myb domain protein 5 (.1) Potri.014G100800 [exp] 211 / 7e-67 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.004G138000 [exp] 203 / 2e-63 AT4G38620 257 / 8e-85 myb domain protein 4 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013762 [exp] 232 / 2e-75 AT3G13540 241 / 1e-79 myb domain protein 5 (.1) Lus10039173 [exp] 231 / 7e-75 AT3G13540 244 / 3e-81 myb domain protein 5 (.1) Lus10030378 [exp] 204 / 4e-64 AT3G61250 341 / 8e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10014784 [exp] 202 / 2e-63 AT3G61250 342 / 1e-118 LATE MERISTEM IDENTITY2, myb domain protein 17 (.1) Lus10000411 [exp] 201 / 4e-63 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10016948 [exp] 200 / 1e-62 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10009448 [exp] 199 / 1e-62 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10001548 [exp] 198 / 8e-62 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10041142 [exp] 194 / 6e-60 AT1G34670 315 / 2e-106 myb domain protein 93 (.1) Lus10018418 [exp] 194 / 8e-60 AT4G21440 334 / 5e-114 A. THALIANA MYB 4, MYB-like 102 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G005100.1 pacid=42792997 polypeptide=Potri.001G005100.1.p locus=Potri.001G005100 ID=Potri.001G005100.1.v4.1 annot-version=v4.1 ATGAGAAAGCCAACTTCAGCTACAACAGCAGAATCAGCAGCAAAGACCACCCCATGCTGCATCAAGGTAGGGTTAAAGAGAGGACCGTGGACACCAGAAG AAGATGAACTCCTTGTTAACTATATCAAGAAAGAAGGTGAAGGTCGGTGGCGAACTTTACCCAAGAAAGCCGGTCTCCTCCGCTGTGGCAAGAGCTGCCG TCTCCGCTGGATGAACTACCTCCGCCCTTCTGTTAAACGTGGCCAGATCGCCGATGATGAAGAAGATCTCATTCTCCGCCTCCATCGACTCCTAGGCAAT AGGTGGTCATTGATAGCTGGGAGAATTCCAGGGCGTACAGATAATGAAATAAAGAATTACTGGAACACGCACCTGAGTAAGAAGCTGATAAGCCAGGGAA TTGATCCAAGAACCCATAAGCCTCTCAATCCTCAATCTTTTGATCAATCAAAACCTTCTTTGTCGAAGGCGAATCTGCACCAAGCACGCCTAAAAGAACC TATTAAGAATATTGTTTCTTCTGGTTTGGAAGAAGCTACTAGTGGCAGTACTCGCATAATCAACAGAGAGAATGAGTATTTTCAAAACAACATTAATGCC CACCTCGATGATCAGTATCACGCCGACCATTTTATTGCAAGTCATGGCTATACAAGTTTGCTGAATTATGATGGTACTTCTGGGATGGATTTGAAAGGCG ATCAAAGTCTTGGTATTGGAGAAGCTGATCAAGATATCAATTCCGGCACCGACGATGTGTTTTCGTTCCTCAATTCACTCATAAATGAGGAGGCTTTGCA ACAACATCAAATCCTTAATGTGCCTAATGTGAATTGTGCACCACCCAGTTCAGATCCTTTTGTTTCAATTGCTGCCACAACATTTGGACTCGGAACTGGC TGGGAATCTACTCTCATGTCTTCTGCTTTTAACCAAAATGAATCCAAATAG
AA sequence Show only first row Show all	>Potri.001G005100.1 pacid=42792997 polypeptide=Potri.001G005100.1.p locus=Potri.001G005100 ID=Potri.001G005100.1.v4.1 annot-version=v4.1 MRKPTSATTAESAAKTTPCCIKVGLKRGPWTPEEDELLVNYIKKEGEGRWRTLPKKAGLLRCGKSCRLRWMNYLRPSVKRGQIADDEEDLILRLHRLLGN RWSLIAGRIPGRTDNEIKNYWNTHLSKKLISQGIDPRTHKPLNPQSFDQSKPSLSKANLHQARLKEPIKNIVSSGLEEATSGSTRIINRENEYFQNNINA HLDDQYHADHFIASHGYTSLLNYDGTSGMDLKGDQSLGIGEADQDINSGTDDVFSFLNSLINEEALQQHQILNVPNVNCAPPSSDPFVSIAATTFGLGTG WESTLMSSAFNQNESK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13540	MYB	ATMYB5, ATM2	myb domain protein 5 (.1)		Potri.001G005100 [exp]	0	1
AT4G25640		FFT, ATDTX35	FLOWER FLAVONOID TRANSPORTER, ...		Potri.012G144900 [exp]	3.74	0.9277
AT2G29990		NDA2	alternative NAD(P)H dehydrogen...		Potri.009G047100 [exp]	4.24	0.9151
AT3G06868			unknown protein		Potri.008G220700 [exp]	5.29	0.9050
AT1G73300		SCPL2	serine carboxypeptidase-like 2...		Potri.001G291800 [exp]	6.32	0.9034
AT2G33590			NAD(P)-binding Rossmann-fold s...		Potri.002G004100 [exp]	6.92	0.9018
AT1G33110			MATE efflux family protein (.1...		Potri.013G069700 [exp]	7.07	0.9155
AT3G16520		UGT88A1	UDP-glucosyl transferase 88A1 ...		Potri.012G035800 [exp]	7.61	0.8868
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.008G021400 [exp]	9.64	0.8856
AT1G65060		4CL3	4-coumarate:CoA ligase 3 (.1.2...		Potri.019G049500 [exp]	10.48	0.8927	Ptr4CL4,4CL3.1
AT5G26230		MAKR1	membrane-associated kinase reg...		Potri.010G090500 [exp]	10.95	0.9050

Compare expression of checked genes

Potri.001G005100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.