Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13620 675 / 0 Amino acid permease family protein (.1) AT1G31830 394 / 2e-133 Amino acid permease family protein (.1.2) AT5G05630 389 / 3e-131 Amino acid permease family protein (.1) AT3G19553 376 / 1e-126 Amino acid permease family protein (.1) AT1G31820 371 / 2e-124 Amino acid permease family protein (.1) AT3G03720 48 / 1e-05 CAT4 cationic amino acid transporter 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G007200 [exp] 610 / 0 AT3G13620 567 / 0.0 Amino acid permease family protein (.1) Potri.003G103600 [exp] 378 / 4e-127 AT1G31830 694 / 0.0 Amino acid permease family protein (.1.2) Potri.001G296100 [exp] 354 / 1e-117 AT3G19553 678 / 0.0 Amino acid permease family protein (.1) Potri.004G178000 [exp] 350 / 1e-116 AT1G31830 637 / 0.0 Amino acid permease family protein (.1.2) Potri.009G090300 [exp] 350 / 3e-116 AT3G19553 673 / 0.0 Amino acid permease family protein (.1) Potri.013G065000 [exp] 50 / 2e-06 AT1G58030 873 / 0.0 cationic amino acid transporter 2 (.1) Potri.019G039600 [exp] 50 / 4e-06 AT3G03720 797 / 0.0 cationic amino acid transporter 4 (.1.2) Potri.019G039700 [exp] 48 / 2e-05 AT1G58030 924 / 0.0 cationic amino acid transporter 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039180 [exp] 681 / 0 AT3G13620 711 / 0.0 Amino acid permease family protein (.1) Lus10034046 [exp] 632 / 0 AT3G13620 641 / 0.0 Amino acid permease family protein (.1) Lus10010512 [exp] 631 / 0 AT3G13620 643 / 0.0 Amino acid permease family protein (.1) Lus10013757 [exp] 496 / 1e-173 AT3G13620 536 / 0.0 Amino acid permease family protein (.1) Lus10012153 [exp] 409 / 2e-139 AT1G31830 744 / 0.0 Amino acid permease family protein (.1.2) Lus10007593 [exp] 407 / 2e-135 AT1G31830 743 / 0.0 Amino acid permease family protein (.1.2) Lus10003232 [exp] 379 / 1e-127 AT1G31830 687 / 0.0 Amino acid permease family protein (.1.2) Lus10040966 [exp] 365 / 4e-122 AT3G19553 694 / 0.0 Amino acid permease family protein (.1) Lus10009849 [exp] 361 / 1e-120 AT3G19553 693 / 0.0 Amino acid permease family protein (.1) Lus10020320 [exp] 52 / 7e-07 AT1G58030 912 / 0.0 cationic amino acid transporter 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF00324 [poplar] [flax] AA_permease Amino acid permease
Representative CDS sequence Show only first row Show all	>Potri.001G007300.1 pacid=42791861 polypeptide=Potri.001G007300.1.p locus=Potri.001G007300 ID=Potri.001G007300.1.v4.1 annot-version=v4.1 ATGTCTTCTATAAACCTGGAAACCACCTCCGAAACCCCACCCAAAGCACCAGACACCCTTCAAGAACTTCCTATCACCACCACCGCCAAGAAATTTCCAA AAAAACTCACCCTGGTCCCTCTAATATTCTTAATCTACTTTGAAGTTGCTGGGGGTCCTTATGGAGAAGAACCTGCGGTCCAGGCTGCGGGGCCTCTGTA TGCCTTACTTGGTTTCTTGATATTTCCATTTATATGGAGTATTCCTGAGGCTCTTATCACCGCTGAGCTCTCCACTGCTTACCCTGGAAATGGAGGTTTT GTCATATGGGCTGAAAGGGCTTTTGGTCCTTTCTGTGGATCTCTGATGGGTTCTTGGAAATTCTTGAGTGGTGTTATTAATATTGCTGCTTTTCCTGTTC TTTGCATTGATTACATGGAGAAGGTAGTTCCTGCTTTGGAATCAGGTTGGCCTAGAAAAGTTGCTGTCTTGATTTCAACATTGTTGTTATCCTTTTTAAA CTATACTGGATTGACTATTGTTGGTTATGCTGCTGTTCTGCTTGGTCTTGTTTCGCTTTCGCCTTTTATAGTTATGTCTTTGATAGCAATCCCTAAGATT CATCCTCATAGGTGGATAAGTTTTGGCCAAAAGGGTGTGAAAAAGGACTGGACTTTGTTCTTTAACACACTTTTTTGGAACTTGAATTTCTGGGACAATG TTAGTACTTTGGCTGGTGAAGTGGATGCACCCCAGAAAACATTTCCTATGGCCTTACTTGTGGCTGTGATCTTCACTTGTGTGGCTTACTTGATTCCACT TTTTGCGGTGACTGGTGCTGTTTCTGTGGATCAAAGTCTATGGGAATCAGGATTTCATGCCACTGCTGCAGAGATGATTGCAGGGAAGTGGCTAAAGTAT TGGATTGAAGTTGGTGCTGTGTTATCTGCTATTGGTTTATATGAGGCTCAATTAAGTAGTAGTGCATACCAGCTTCTTGGTATGGCTGATTTAGGATTTG TTCCAAACTTCTTTGCCATTAGGTCTAAAAGGTTCAACACACCTTGGGTGGGGATATTGCTATCCACTTTGATCACAATTGGTGTCTCATATATGACCTT TACAGATATAATTTCGTCAGCGAATTTCTTATATAGTTTAGGTATGTTGTTAGAGTTTGCATCTTTTATTTGGTTGAGAAAGAAATTACCAGGGTTGAAA AGGCCTTACAGGATTCCAATGAGGCTTCCAGGTTTGATTATTATGTGCTTAGTACCATCTGCATTTTTGGTTCTTATAATGGCTATTGCCACTAAGACTG TTTACTTGGTGAGTGGTTTGATGACTGTGGGTGCCATTGGATTTTACTTCTTTATGAATTTTTGCAAGACAAAGCAGTGGTTCAAGTTTAGCAGCGGTGA AGTCATTGAAGATTGA
AA sequence Show only first row Show all	>Potri.001G007300.1 pacid=42791861 polypeptide=Potri.001G007300.1.p locus=Potri.001G007300 ID=Potri.001G007300.1.v4.1 annot-version=v4.1 MSSINLETTSETPPKAPDTLQELPITTTAKKFPKKLTLVPLIFLIYFEVAGGPYGEEPAVQAAGPLYALLGFLIFPFIWSIPEALITAELSTAYPGNGGF VIWAERAFGPFCGSLMGSWKFLSGVINIAAFPVLCIDYMEKVVPALESGWPRKVAVLISTLLLSFLNYTGLTIVGYAAVLLGLVSLSPFIVMSLIAIPKI HPHRWISFGQKGVKKDWTLFFNTLFWNLNFWDNVSTLAGEVDAPQKTFPMALLVAVIFTCVAYLIPLFAVTGAVSVDQSLWESGFHATAAEMIAGKWLKY WIEVGAVLSAIGLYEAQLSSSAYQLLGMADLGFVPNFFAIRSKRFNTPWVGILLSTLITIGVSYMTFTDIISSANFLYSLGMLLEFASFIWLRKKLPGLK RPYRIPMRLPGLIIMCLVPSAFLVLIMAIATKTVYLVSGLMTVGAIGFYFFMNFCKTKQWFKFSSGEVIED

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13620			Amino acid permease family pro...		Potri.001G007300 [exp]	0	1
AT3G13620			Amino acid permease family pro...		Potri.001G007200 [exp]	3.74	0.8810	PtrLAT1
					Potri.017G143760 [exp]	6.00	0.8472
AT4G21120		CAT1, AAT1	CATIONIC AMINO ACID TRANSPORTE...		Potri.012G131300 [exp]	7.00	0.8283	Pt-AAT1.1
AT3G19553			Amino acid permease family pro...		Potri.001G296100 [exp]	9.94	0.8596
AT1G14560			Mitochondrial substrate carrie...		Potri.006G226300 [exp]	16.00	0.8178
AT3G23600			alpha/beta-Hydrolases superfam...		Potri.007G112700 [exp]	17.74	0.8334
AT1G33720		CYP76C6	"cytochrome P450, family 76, s...		Potri.015G138900 [exp]	19.59	0.8023
AT5G61530			small G protein family protein...		Potri.004G233400 [exp]	21.63	0.7962
AT3G26020			Protein phosphatase 2A regulat...		Potri.010G054400 [exp]	22.13	0.7514
AT3G04940		ATCYSD1	cysteine synthase D1 (.1)		Potri.005G048132 [exp]	23.10	0.8292

Compare expression of checked genes

Potri.001G007300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.