Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50420 600 / 0 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT1G66350 230 / 1e-69 GRAS RGL1 RGA-like 1 (.1) AT3G03450 222 / 5e-66 GRAS RGL2 RGA-like 2 (.1) AT5G48150 214 / 1e-63 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) AT1G50600 206 / 1e-59 GRAS SCL5 scarecrow-like 5 (.1) AT1G21450 196 / 7e-56 GRAS SCL1 SCARECROW-like 1 (.1) AT4G17230 184 / 6e-52 GRAS SCL13 SCARECROW-like 13 (.1) AT1G07530 162 / 7e-43 GRAS SCL14, ATGRAS2 GRAS \(GAI, RGA, SCR\) 2, ARABIDOPSIS THALIANA GRAS \(GAI, RGA, SCR\) 2, SCARECROW-like 14 (.1) AT2G29060 150 / 3e-39 GRAS GRAS family transcription factor (.1) AT3G54220 148 / 2e-38 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G202100 [exp] 852 / 0 AT1G50420 568 / 0.0 scarecrow-like 3 (.1) Potri.009G048700 [exp] 681 / 0 AT1G50420 682 / 0.0 scarecrow-like 3 (.1) Potri.004G208700 [exp] 307 / 3e-100 AT1G50420 303 / 7e-99 scarecrow-like 3 (.1) Potri.017G125200 [exp] 226 / 5e-67 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.014G164400 [exp] 221 / 1e-65 AT5G48150 716 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Potri.005G186500 [exp] 221 / 2e-65 AT1G21450 685 / 0.0 SCARECROW-like 1 (.1) Potri.002G073400 [exp] 216 / 2e-63 AT1G21450 707 / 0.0 SCARECROW-like 1 (.1) Potri.001G361700 [exp] 211 / 5e-62 AT1G50600 637 / 0.0 scarecrow-like 5 (.1) Potri.001G409500 [exp] 212 / 6e-62 AT5G48150 518 / 3e-180 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024177 [exp] 687 / 0 AT1G50420 582 / 0.0 scarecrow-like 3 (.1) Lus10039562 [exp] 682 / 0 AT1G50420 579 / 0.0 scarecrow-like 3 (.1) Lus10019773 [exp] 631 / 0 AT1G50420 543 / 0.0 scarecrow-like 3 (.1) Lus10009717 [exp] 630 / 0 AT1G50420 614 / 0.0 scarecrow-like 3 (.1) Lus10022418 [exp] 603 / 0 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10034374 [exp] 282 / 1e-90 AT1G50420 279 / 2e-89 scarecrow-like 3 (.1) Lus10005078 [exp] 273 / 5e-87 AT1G50420 273 / 3e-87 scarecrow-like 3 (.1) Lus10016596 [exp] 229 / 6e-69 AT5G48150 624 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10012323 [exp] 206 / 3e-60 AT5G48150 659 / 0.0 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2) Lus10017758 [exp] 205 / 2e-59 AT2G01570 454 / 4e-155 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.001G023500.1 pacid=42791955 polypeptide=Potri.001G023500.1.p locus=Potri.001G023500 ID=Potri.001G023500.1.v4.1 annot-version=v4.1 ATGGCAGGAATGGCCCAAGAAGAAGGATCATCATCTGTAACTTCATCACCTCTTCAGTTCTTTCCGTGGATGCCACTATCACCAGGGACGGGATCACCAT ACCCTTGGCTTAGGGAGCTGAAATCTGAAGACAGAGGTTTGTGTCTGATCCATCTTCTGCTTGCCTGCGCAAACCATGTAGCAGCTGGTAGTATTGAGAA CGCAAATATTGGCCTTGAGCAAATCTCCCATCTTGCCTCTCCTGATGGTGATACCATGCAGCGGATTGCTGCGTACTTCACCGCAGGACTTGCTGATCGC ATTCTTAAAGGATGGCCGGGTTTGCACAAAGCTCTCAATCCAAAACAAGCATCTTTGATATCTGAAGAAATTCTTGTTCAAAGATTATTCTTTGAGCTCT TTCCCTTCTTAAAGCTTTCATATGTGATCACAAATCAGGCCATTATAGAGGCAATGGAAGGGGAGAAGATGGTTCATATCATAGATCTAAATTCATTTGA ACCTGCTCAGTGGATAAATCTTCTTCAAACATTAAGTGCACGGCCTGAAGGCCCGCCTCATTTGAGAATAACAGGTATTCATGAGCAGAAGGAGGTATTG GAGCAAATGGCTCTTCGATTGACAGAAGAAGCTGAAAAGCTGGACATCCCATTTCAGTTCAATCCTATTGTGAGCAAACTAGAGAATCTTGACCTTGAAA ATTTGCGTGTTAAGACTGGAGAAGCTCTTGCTGTCAGTTCTGTACTCCAGCTGCATACTCTATTGGCAATGGATGATGAGATGCATAGAAGGAACTCTCC ATCAGGATATAAGAATCCAAACTCTAACCATTTTCAGAGAGTACAGATTAATCAAAACCGACGCACTCTCGGTGATTGGCTTGAGAGAGATGTGGTTAAT GCCTATAGCTCAAGTCCTGACTCAGCATTATCCCCACTATCTCTTGCTGCTTCACCAAAGATGGGCAGCTTTCTAAATGCACTTAGGAGTCTCTCACCAA AATTGATGGTGATAACTGAGCAAGAATCAAATCATAATGGGTTTAATTTAATGGAGAGGGTCACAGAAGCTTTGAATTTTTATGCTGCGCTATTTGATTG TTTGGAGTCTACTGTATCAAGAGTATCATTAGAGCGGCATAAGGTTGAGAAGATGTTATTTGGGGAGGAAATTAAGAACATCATTGCTTGTGAGGGAACT GATAGAAAGGAGAGGCATGAGAAGTTGGAAAAGTGGATTCTAAGGCTTGAGTTGGCTGGATTCGGGATCATTCCTCTGAGCTACCATGGTAGGCTGCAGG CAAACAGGTTTTTGCAGAGTTATGGCTATGACGGATATAAAATCAAAGAAGAAAACGGATGTTTGGTTATTTGCTGGCAGGATAGACCGCTTTTCTCTGT GTCAGCTTGGAGATTCAGGAGGTATGACTGA
AA sequence Show only first row Show all	>Potri.001G023500.1 pacid=42791955 polypeptide=Potri.001G023500.1.p locus=Potri.001G023500 ID=Potri.001G023500.1.v4.1 annot-version=v4.1 MAGMAQEEGSSSVTSSPLQFFPWMPLSPGTGSPYPWLRELKSEDRGLCLIHLLLACANHVAAGSIENANIGLEQISHLASPDGDTMQRIAAYFTAGLADR ILKGWPGLHKALNPKQASLISEEILVQRLFFELFPFLKLSYVITNQAIIEAMEGEKMVHIIDLNSFEPAQWINLLQTLSARPEGPPHLRITGIHEQKEVL EQMALRLTEEAEKLDIPFQFNPIVSKLENLDLENLRVKTGEALAVSSVLQLHTLLAMDDEMHRRNSPSGYKNPNSNHFQRVQINQNRRTLGDWLERDVVN AYSSSPDSALSPLSLAASPKMGSFLNALRSLSPKLMVITEQESNHNGFNLMERVTEALNFYAALFDCLESTVSRVSLERHKVEKMLFGEEIKNIIACEGT DRKERHEKLEKWILRLELAGFGIIPLSYHGRLQANRFLQSYGYDGYKIKEENGCLVICWQDRPLFSVSAWRFRRYD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Potri.001G023500 [exp]	0	1
AT1G64280		SAI1, NIM1, NPR...	SALICYLIC ACID INSENSITIVE 1, ...		Potri.006G148100 [exp]	6.70	0.8691	NPR1.1
AT5G47860			Protein of unknown function (D...		Potri.003G158400 [exp]	7.00	0.8880
AT5G05320			FAD/NAD(P)-binding oxidoreduct...		Potri.019G003300 [exp]	8.36	0.8790
AT1G08230		ATGAT1	L-GAMMA-AMINOBUTYRIC ACID TRAN...		Potri.005G219300 [exp]	10.95	0.8723
AT1G28380		NSL1	necrotic spotted lesions 1, MA...		Potri.004G047700 [exp]	16.15	0.8736
AT5G47470			Nodulin MtN21 /EamA-like trans...		Potri.001G157600 [exp]	16.73	0.8572
AT4G30080	ARF	ARF16	auxin response factor 16 (.1)		Potri.016G090300 [exp]	17.32	0.8479
					Potri.016G140250 [exp]	17.97	0.8484
AT4G14090			UDP-Glycosyltransferase superf...		Potri.017G101800 [exp]	23.66	0.8628
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Potri.009G011900 [exp]	24.97	0.8682

Compare expression of checked genes

Potri.001G023500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.