Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 558 / 0 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 509 / 5e-160 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 241 / 7e-67 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G53350 217 / 3e-58 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 214 / 3e-57 Disease resistance protein (CC-NBS-LRR class) family (.1) AT3G07040 203 / 1e-53 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRINGAE 3, RESISTANCE TO P. SYRINGAE PV MACULICOLA 1, NB-ARC domain-containing disease resistance protein (.1) AT5G35450 196 / 2e-51 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58400 194 / 6e-51 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58602 191 / 2e-49 LRR and NB-ARC domains-containing disease resistance protein (.1.2) AT3G46730 189 / 3e-49 NB-ARC domain-containing disease resistance protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G261600 [exp] 699 / 0 AT3G14470 628 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.004G196100 [exp] 689 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G029300 [exp] 655 / 0 AT3G14470 676 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.001G261300 [exp] 649 / 0 AT3G14470 538 / 2e-170 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121700 [exp] 645 / 0 AT3G14470 461 / 2e-144 NB-ARC domain-containing disease resistance protein (.1) Potri.005G007001 [exp] 644 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G121500 [exp] 640 / 0 AT3G14470 483 / 9e-153 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200500 [exp] 640 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.017G128000 [exp] 632 / 0 AT3G14470 435 / 6e-135 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039540 [exp] 686 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10024173 [exp] 647 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 640 / 0 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039509 [exp] 603 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 596 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026132 [exp] 591 / 0 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 578 / 0 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 467 / 3e-146 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1) Lus10022351 [exp] 420 / 3e-127 AT3G14470 369 / 1e-108 NB-ARC domain-containing disease resistance protein (.1) Lus10004126 [exp] 399 / 1e-122 AT3G14470 353 / 6e-106 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G025400.1 pacid=42788239 polypeptide=Potri.001G025400.1.p locus=Potri.001G025400 ID=Potri.001G025400.1.v4.1 annot-version=v4.1 ATGGCAGTGAAGCTTTGGCTAAGTGACCTCAAAGAAGTCGCTTATGATGCAGACGATGTGCTAGATGAGGTTGCAACTGAAGCTTTTCGGTTTAACCAAG AGAAAAAGGCTAGCAGCTTGATCTCTCTATCTAAAGATTTTCTCTTTAAACTTGGGTTAGCTCCTAAGATAAAGGAAATCAATGAGAGGCTAGATGAAAT AGCTAAAGAAAGGGACGAGCTTGGTTTGAGAGAGGGAGCTGGAGCAACATGGATCGAAACGAGGGACAGGGAGAGGTTGCAAACTAGCTCCTTAATCGAC GAATCCTGTGTTTTTGGTAGGAAGGAGGATAAGAAGGAGATTGTAAATTTGTTAGTGTCTGATGACTATTGTGGAAATGATGTTGGGGTTCTTCCCATCG TGGGCATGGGAGGCCTGGGAAAGACAACTCTCGCTCAGCTTGTGTTCAATGATGAAACTGTCCATTTCGATTTGAAGATGTGGGTTTGTGTCTCTGATGA CTTCAATGCTCAAAGGCTGACAAAATCGATCTTGAAGTCTGTTATAAGGGAAAGTTGTGATCTCATGCATTTGAATATCGATCTCATGGATTTTAATATC CTACAAACAAGTCTCCAGGAGAAGTTGAGGGGGAAAAGGTTCTTGCTTGTGCTTGATGATGTGTGGCATGAGAAGAAAAGTGACTGGGATGTGGTTCGCC TTCCTTTCAGAGCTGGAGCATCTGGAAGTAAAATCATTGTAACTACCCGAAGTGAAAAGGTTGCATCAATCACGGGCACATTTCCACCTTTCCGTTTGGA AGGTTTATCTGAAAATGATTGCTGGTTGTTGTTCAAACAGAGGGCATTTATAGATGGGAATGAAGATGCACATCAAAACTTGGTACCAATTGGCAAGGAA ATTTTGAAGAAATGTGGAGGTTTGCCTCTGGCAGCAAAGACACTTGGGGGACTCCTACACTCGATAACTGAAGTTTATGAATGGGAAATGATCTTGAAAA GCGATCTATGGGACTTGGAAGTGGAGGAGAATGAAATTCTGCCGGCTCTGAGGCTAAGCTACAATCATCTTCCGGCACATCTGAAGCAGTGTTTCATATA CTGCTCCATATTTCCAAAAGATCACAATTTTGATGAGGAGAAGCTAGTCTTGCTATGGATGGCAGAGGGTTTTGTTATTTCCAAGGGAAGGAGATGCTTG GAAGATGTTGCATCTGGCTATTTTCACGATTTATTGTTGAGGTCATTTTTTCAACGATCCAAAACCAATCCCTCGAAGTTTGTTATGCATGACTTGATTC ATGACCTGGCACAGTTTGTAGCTGGGGAATCATGCTTCACATTGGATGTCAAAAAATTGCAAGACATTGGAGAAAAAGTTCGGCATTCATCTGTGTTGGT TAACAAATCGGAATCAGTTCCGTTTGAGGCGTTCCGTACATCAAAAAGCTTACGAACGATGCTTTTGCTTTGCAGGGAGCCTCGTGCGAAGGTCCCTCAT GATTTGATACTCTCTTTGAGATGCTTACGGTCACTAGACCTGTGTTATTCTGCTATAAAGGAGCTGCCAGATTTAATGGGAAATTTGAGGCATATCAGGT TTCTTGATCTCTCTCACACTTCCATCAGGGTGCTACCTGAATCAATTTGCAGCCTCTACAATCTGCAGACTCTGGTTCTTATCAATTGCAAGAATCTCCA TGCTTTGCCTGGAGACACAAATCATTTGGTGAATCTACGCCATCTTAATTTGACTGGATGCGGGCAGCTCATATCCATGCCTCCTGACATTGGAAAACTA ACTTCTTTGCAAAGGCTACACAGAATTGTTGCTGGAAAAGGGATTGGGTGTGGCATTGGCGAGTTGAAGAACATGAACGAGCTTCGAGCAACGCTTTGTA TTGATACGGTTGGAGATGTTCCTAACATCACAGAAGCAAAGGAAGCCAACTTAAAGAAGAAGCAATATATAAACGAGCTGGTGTTAAGATGGGGCAGATG TCGACCAGATGGAATTGATGATGAGTTGCTTGAATGTCTAGAACCACATACTAACCTTAGAGAATTAAGGATTGACGTGTATCCTGGTGCGAAGTTTCCA AATTGGATGGGATATTCTTCGTTATCCCACTTAGAAAAGATCGAATTCTTTCACTGTAACTACTGCAAAACCCTGCCACCTCTCGGGCAACTACCTTCTC TCAAATCTCTCTCCATATATATGATGTGTGAGGTCGAAAACATTGGCCGTGAGTTTTATGGTGAGGGAAAGATTAAGGGGTTTCCTTCCTTGGAGAAACT AAAGCTTGAAGACATGAGAAATTTGAAGGAATGGCAAGAGATTGACCATGGCGAATTTCCGAAGCTCCAGGAGCTTGCTGTTCTGAACTGCCCCAATATT TCAAGTCTTCCAAAATTTCCAGCTCTATGTGAACTGTTGCTAGACGATTGTAATGAGACAATATGGAGTTCGGTCCCACTCCTCACCTCTCTATCATCGT TGAAAATTTCAAACTTTCGGAGGACAGAAGTATTTCCTGAAGGCCTTTTCCAGGCACTAAGTTCACTGAAAGAACTCAGGATCAAGCACTTCTATCGGCT GAGGACATTGCAAGAGGAGTTGGGCTTACATGATCTTCCTTCCCTCCAACGCTTAGAAATTTTGTTTTGTCCGAAACTAAGGTCATTTTCAGGAAAAGGG TTTCCTCTCGCTCTGCAATATCTTTCAATAAGAGCGTGCAATGATTTGAAGGATCTACCAAATGGGCTACAAAGTCTATCATCTCTTCAAGATCTGAGCA TTCTCAATTGCCCTAGACTTGTATCTTTTCCAGAAGAGAAGCTTCCGAGCTCACTCAAGAGTTTGCGAATTTCAGCATGTGCAAACCTTGAATCACTTCC TTCGGGTCTGCATGATCTCTTGAATCTTGAAAGTTTGGGTATACAATCCTGCCCAAAGATTGCATCCTTGCCTACTTTGGGGTTGCCAGCCTCACTTTCC TCATTGTCAATCTTTGATTGTGAGTTGTTAGACGAAAGGTGTCGCCAAGGTGGTGAAGATTGGCCCAAGATAGCTCATGTTGCTCAGAAGTGGATCGGAA ATTATTGA
AA sequence Show only first row Show all	>Potri.001G025400.1 pacid=42788239 polypeptide=Potri.001G025400.1.p locus=Potri.001G025400 ID=Potri.001G025400.1.v4.1 annot-version=v4.1 MAVKLWLSDLKEVAYDADDVLDEVATEAFRFNQEKKASSLISLSKDFLFKLGLAPKIKEINERLDEIAKERDELGLREGAGATWIETRDRERLQTSSLID ESCVFGRKEDKKEIVNLLVSDDYCGNDVGVLPIVGMGGLGKTTLAQLVFNDETVHFDLKMWVCVSDDFNAQRLTKSILKSVIRESCDLMHLNIDLMDFNI LQTSLQEKLRGKRFLLVLDDVWHEKKSDWDVVRLPFRAGASGSKIIVTTRSEKVASITGTFPPFRLEGLSENDCWLLFKQRAFIDGNEDAHQNLVPIGKE ILKKCGGLPLAAKTLGGLLHSITEVYEWEMILKSDLWDLEVEENEILPALRLSYNHLPAHLKQCFIYCSIFPKDHNFDEEKLVLLWMAEGFVISKGRRCL EDVASGYFHDLLLRSFFQRSKTNPSKFVMHDLIHDLAQFVAGESCFTLDVKKLQDIGEKVRHSSVLVNKSESVPFEAFRTSKSLRTMLLLCREPRAKVPH DLILSLRCLRSLDLCYSAIKELPDLMGNLRHIRFLDLSHTSIRVLPESICSLYNLQTLVLINCKNLHALPGDTNHLVNLRHLNLTGCGQLISMPPDIGKL TSLQRLHRIVAGKGIGCGIGELKNMNELRATLCIDTVGDVPNITEAKEANLKKKQYINELVLRWGRCRPDGIDDELLECLEPHTNLRELRIDVYPGAKFP NWMGYSSLSHLEKIEFFHCNYCKTLPPLGQLPSLKSLSIYMMCEVENIGREFYGEGKIKGFPSLEKLKLEDMRNLKEWQEIDHGEFPKLQELAVLNCPNI SSLPKFPALCELLLDDCNETIWSSVPLLTSLSSLKISNFRRTEVFPEGLFQALSSLKELRIKHFYRLRTLQEELGLHDLPSLQRLEILFCPKLRSFSGKG FPLALQYLSIRACNDLKDLPNGLQSLSSLQDLSILNCPRLVSFPEEKLPSSLKSLRISACANLESLPSGLHDLLNLESLGIQSCPKIASLPTLGLPASLS SLSIFDCELLDERCRQGGEDWPKIAHVAQKWIGNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.001G025400 [exp]	0	1
AT4G24570		DIC2	dicarboxylate carrier 2 (.1)		Potri.017G047800 [exp]	4.24	0.8572
AT4G12010			Disease resistance protein (TI...		Potri.019G097100 [exp]	5.65	0.8787
AT4G16820		PLA-I{beta]2	phospholipase A I beta 2, alph...		Potri.003G081500 [exp]	7.21	0.7837
AT4G20880			ethylene-responsive nuclear pr...		Potri.011G162400 [exp]	7.48	0.8184
AT5G17680			disease resistance protein (TI...		Potri.019G098500 [exp]	8.00	0.8637
AT5G38200			Class I glutamine amidotransfe...		Potri.010G120600 [exp]	8.06	0.8210
AT1G67920			unknown protein		Potri.008G134100 [exp]	8.24	0.8091
AT5G57580			Calmodulin-binding protein (.1...		Potri.005G020200 [exp]	11.09	0.7526	CBP60.7
					Potri.016G004601 [exp]	14.28	0.8236
AT4G16860		RPP5, RPP4	recognition of peronospora par...		Potri.019G098800 [exp]	15.90	0.8256

Compare expression of checked genes

Potri.001G025400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.