Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G36930 516 / 3e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT4G19510 363 / 4e-108 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2) AT1G27170 349 / 6e-101 transmembrane receptors;ATP binding (.1.2) AT5G17680 337 / 7e-97 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G41750 317 / 2e-91 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G27180 320 / 2e-90 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT4G12010 312 / 1e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G49140 306 / 4e-88 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G46450 302 / 9e-86 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G18360 297 / 2e-85 Disease resistance protein (TIR-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G099700 [exp] 1010 / 0 AT5G36930 562 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G018800 [exp] 912 / 0 AT5G36930 512 / 7e-163 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G009251 [exp] 639 / 0 AT5G36930 508 / 1e-160 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008164 [exp] 637 / 0 AT5G36930 491 / 3e-154 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008292 [exp] 632 / 0 AT5G36930 454 / 2e-140 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G008868 [exp] 631 / 0 AT5G36930 471 / 1e-146 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012475 [exp] 629 / 0 AT5G36930 431 / 1e-131 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G009400 [exp] 621 / 0 AT5G36930 504 / 4e-162 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.011G012000 [exp] 608 / 0 AT5G36930 489 / 2e-153 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005171 [exp] 861 / 0 AT1G27170 576 / 0.0 transmembrane receptors;ATP binding (.1.2) Lus10011741 [exp] 725 / 0 AT5G36930 540 / 4e-172 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10018616 [exp] 535 / 1e-168 AT5G36930 578 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10033825 [exp] 508 / 8e-164 AT5G36930 400 / 3e-123 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10039850 [exp] 477 / 3e-148 AT5G36930 573 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 409 / 3e-123 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 402 / 7e-121 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10029722 [exp] 397 / 7e-120 AT5G17680 608 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10003749 [exp] 374 / 9e-110 AT5G17680 517 / 5e-161 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10014207 [exp] 359 / 3e-105 AT5G36930 446 / 5e-135 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain CL0173 [poplar] [flax] STIR PF13676 [poplar] [flax] TIR_2 TIR domain
Representative CDS sequence Show only first row Show all	>Potri.001G028750.1 pacid=42792773 polypeptide=Potri.001G028750.1.p locus=Potri.001G028750 ID=Potri.001G028750.1.v4.1 annot-version=v4.1 ATGGCTGCTATGATAGACTGGAAAGCCTGCTCTTCAATCCGTCCGCACGCTTATGATGTGTTCTTGAGTTTCAGAGGTGCAGATACGCGCAAGAACTTTA CTGGTCACCTCTATATGGCTTTGCAAGGGGCTGGAATTCGTACATTTAGAGATGAAGATGAAATCGAGGGAGGAGAACATATTGGTTTTAAAATAACAAA AGCAATACAAGAGTCGAAAATGTCACTAGTGGTGTTTTCAAGAGACTATGCTTCTTCAAAATGGTGTCTGGAAGAACTCTTGATGATTATGAAACGTAGA GAAACTATTGGCCACATTGTTCTGCCAGTTTTTTATGAAGTTGATCCAGATGATGTCTCAATGCAGACTGGTTTTTTTGCTGAGGCATTTGCTAGCCATG AAAAAAACTTCATGGACAATAGAGACATGGAGGAATGCAGGGAGGCTCTTAGAAAAGTTGCAGATCTGAAAGGACCTGTTCTACGTGATAGGTACGAGGC ACAATTTATTCAAGATATTGTCAAAGAAGTTGGAAAGAAATTGAACCGCATGATATTGCATGTTCCCCCATATTTAGTTGGAATTGAGTCTCGTGTAAAA GAAATTAGGTCATGGTTACAAGATGGGTCAGATAAGGTTGGCATAGCAATACTCCATGGGTTTGGTGGAGTTGGGAAGACAACCATTGCTAAGACTGTTT TTAACCAGAACTTTCACGAATTTGATAGTTGGAGCTTTCTTAGAGATGTCAGAGAAACTTCAAATCAGCCAAATGGCTTGGTTAAATTACAAAGACGGCT TCTTTCAGATATCCTGAAGGGAGAACCACAGAAGATAAACAATGTAGATGAAGGAAATATCAAGATCCAAAATGCTTTAGCGTATAAAAGAGTTCTTGTT GTTCTTGATGACGTGGATCACTTGGACCAATTAGATAAAGTTATTGGAGACCGGAATCAGCTTTACCAGGGAAGTAAAATCATTGTAACTGCTAGACATG GATCCTTGCTAAAGTCTCATGAAGCCTGTGAAAAGTTTGGAGTTGATGCTCTTTGTTATGATGAATCACTTCAGCTTTTCAGCTGGCATGCCTTTGGACA AGAACTTCCTAATGAAGGTTATGAAGAGTTCTCTCAGAAAATAGTGCATCATTGTGCTGGGATTCCGCTAGTTCTTGAAGTTCTGGGTTCTTCTCTCTCT GGACAAAGTACAGATTTTTGGAAAAGAGCATCACAAGAACCTGAAGCCATTGATGGTGATGGAAAAATACAGAAGATTCTTAAGATAAGTTATGACTCTC TACGGGATGAACGTGACAAAAACTTATTCCTTGACATAGCTTGTTTCTTCATTGGAAATGACAAAGATTACGTGAGAAGAATCCTCGAGTGCTGTGATTT CTATAGAACACTTGGTATTCAGAAACTCATTGATAGGTGTCTTATAACAATTGATAAAGATAATAAATTGATGATGCATCAATTGCTTAGAGACATGGGG AGAGAAATTGTCCGTCAAGAATCACCCGAGGACCTTGGGAAACGTACAAGACTATGGCATCATGATGATGCACTTGACATACTGGAAAAAAATATGGTAA GAAAATTACTTTTCATGTTTCCACGTAACAACATTTGTGTATGCATTTTGCTTTTGAGAAAACAATTTTTTTTAAAGCAGGGAACACAAAAAGTAAAGAG TCTCGTCCTTGATCAGCAGCTGCTAAATACAGAAAATGAGGTGCACTTGGAAGCAGAAGCATTTACTAAAATGCGGAATCTAAAATTGCTACACCTCAAT AATGTAAAGCTCAGTGGCGGCTATGTAAATCTTCCAAAAAGTTTGGTGTGGCTGTGCTGGCATGGATTCTCTTTGAATTGCTTACCGAATGATCTTTTCC TGAAGGATCTGGTTGTTCTTGACCTGTGTAATAGCAGTCTAAAACAAGTTTGGAACGGAATCCGGGAATGTCGGAGGTTGAAAATCCTTGATCTCAGCCA TTCCCTTTGTCTTGTTACAACCCCTGACTTCTCAGGACTCCAAAGTCTTGAAATATTGTTACTTGAAGGGTGCATAAGTTTGGTTGAGGTTCACTATTCA ATTGGAAACCTTAAGAGGCTTGTTTTTATAAATCTCAAGGATTGCAAAAATCTTCGGAAGCTCCCAAGTGAAATGAGTGAGTTGAAATCACTTCAGGAAC TTAATTTGTCCGGTTGCTTCAATCTTGAAGAGATACCTGAGCAGGTGGGGAAGTTGAGTTCTGAAATGGCGCTTCATGCAGATGGAATGTCAATAAAAAC ATTGCTAGCTTTAGTTCGAAGCTTGTGGGCCTGGGAATCATCTAGAAAAAGCTTGTTATCTGCCCCTTTTACTCTGTCGTTTTTACCAGACTCTCTGATA AAGCTAACTGTCTCTGACTGCAATCTGGAAGATCTTGATATACTTGATCTTAGCAGGCTGAGTTCTTTAGAATATTTAGATCTTAGTGGAAACCCCATTT GTAACCTGCCAGATAGCATGAACTGTCTCACTGCGCTCAAGTCCCTTCTGTTACATCGGTGCCCAAGGCTCCAATCACTTCCAGAGCTACCAGAAAGTTT AATGAGATTAATAGCAAGCAATTATGGATCTTCGGAAAGAATTACTAATCTCCAAAACTTGTTGGGACCATTGGAAGTGGATACTTTTAATCATCATAAA CTGATTGAGGGTCAAGGTGTTTTCAAGTTGGAACTAGTAAGAAATTTTGTTGTAGAGATGATCAAGATGGTGCACTTGTTCAATTTGGCATCTGTAGGAA ATATTGAAGTGACTAGGTCCAATGTTGTGACATCAACTCAGAGAAAGCTTTCAGTCCAGGTATTTCATGACTCTGGCACAAGTAGCATCTTTCTTCCAGG GAGCGATGTTCCTGATTGGTTTTATGTTCGTACTGAGAGTTGTCAAACAACATTTTATTTGCCTCCAAGTTTTGGTTGCGAAATCTGTGGCTTAAATATA TGTGTTGCATATGCATGCATTAACCCTGAAGTTGTTTTCAATAAACCTTATTATGCCAAAATTAGAATCGAGACTAAGGAACTACTTTGGGAATATACGC CAGAATTCTTTGGATTTCCAGAAGCCAATGAGGATATGTTGTGGTTATGCCATTGGAAGTTTAAGGATTGGTTTAAAGATGGAGATGCAGTGCAGTTTTC AGTGGCTATGGCTCCTTATTTTCAGATGAAGAGGTGCGGTATCCGTCCTCTGTATGAACAGCAAGATGATGATGATGATGATGATGATGTTGTTGAATCA AACTCTGGAGAAATAGTCCAGGGCACCTCTCGTCGGCGCAGAACTCTCACTGATAGAGATTTAATAGCATACAAGCGGGACGCAACATATGATCTTCACC ATTATGACACACTTATAAATAGTCTTAAGAATCAATCAGAACTCTGA
AA sequence Show only first row Show all	>Potri.001G028750.1 pacid=42792773 polypeptide=Potri.001G028750.1.p locus=Potri.001G028750 ID=Potri.001G028750.1.v4.1 annot-version=v4.1 MAAMIDWKACSSIRPHAYDVFLSFRGADTRKNFTGHLYMALQGAGIRTFRDEDEIEGGEHIGFKITKAIQESKMSLVVFSRDYASSKWCLEELLMIMKRR ETIGHIVLPVFYEVDPDDVSMQTGFFAEAFASHEKNFMDNRDMEECREALRKVADLKGPVLRDRYEAQFIQDIVKEVGKKLNRMILHVPPYLVGIESRVK EIRSWLQDGSDKVGIAILHGFGGVGKTTIAKTVFNQNFHEFDSWSFLRDVRETSNQPNGLVKLQRRLLSDILKGEPQKINNVDEGNIKIQNALAYKRVLV VLDDVDHLDQLDKVIGDRNQLYQGSKIIVTARHGSLLKSHEACEKFGVDALCYDESLQLFSWHAFGQELPNEGYEEFSQKIVHHCAGIPLVLEVLGSSLS GQSTDFWKRASQEPEAIDGDGKIQKILKISYDSLRDERDKNLFLDIACFFIGNDKDYVRRILECCDFYRTLGIQKLIDRCLITIDKDNKLMMHQLLRDMG REIVRQESPEDLGKRTRLWHHDDALDILEKNMVRKLLFMFPRNNICVCILLLRKQFFLKQGTQKVKSLVLDQQLLNTENEVHLEAEAFTKMRNLKLLHLN NVKLSGGYVNLPKSLVWLCWHGFSLNCLPNDLFLKDLVVLDLCNSSLKQVWNGIRECRRLKILDLSHSLCLVTTPDFSGLQSLEILLLEGCISLVEVHYS IGNLKRLVFINLKDCKNLRKLPSEMSELKSLQELNLSGCFNLEEIPEQVGKLSSEMALHADGMSIKTLLALVRSLWAWESSRKSLLSAPFTLSFLPDSLI KLTVSDCNLEDLDILDLSRLSSLEYLDLSGNPICNLPDSMNCLTALKSLLLHRCPRLQSLPELPESLMRLIASNYGSSERITNLQNLLGPLEVDTFNHHK LIEGQGVFKLELVRNFVVEMIKMVHLFNLASVGNIEVTRSNVVTSTQRKLSVQVFHDSGTSSIFLPGSDVPDWFYVRTESCQTTFYLPPSFGCEICGLNI CVAYACINPEVVFNKPYYAKIRIETKELLWEYTPEFFGFPEANEDMLWLCHWKFKDWFKDGDAVQFSVAMAPYFQMKRCGIRPLYEQQDDDDDDDDVVES NSGEIVQGTSRRRRTLTDRDLIAYKRDATYDLHHYDTLINSLKNQSEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G36930			Disease resistance protein (TI...		Potri.001G028750 [exp]	0	1
AT3G53510		ABCG20	ATP-binding cassette G20, ABC-...		Potri.006G215100 [exp]	6.32	0.6643
AT1G61690			phosphoinositide binding (.1)		Potri.004G030500 [exp]	7.14	0.7245
AT5G25270			Ubiquitin-like superfamily pro...		Potri.018G115500 [exp]	14.28	0.7192
AT1G05950			unknown protein		Potri.007G127800 [exp]	15.71	0.6646
AT1G30410		ATMRP13, ABCC12	ATP-binding cassette C12, mult...		Potri.011G043100 [exp]	17.83	0.6870	Pt-ATMRP12.3
AT5G19420			Regulator of chromosome conden...		Potri.003G197600 [exp]	20.19	0.6688
AT3G14470			NB-ARC domain-containing disea...		Potri.004G194800 [exp]	22.64	0.6821	RGA.63
AT2G02170			Remorin family protein (.1.2)		Potri.008G144300 [exp]	23.00	0.6617
AT5G17020		HIT2, ATXPO1, A...	HEAT-INTOLERANT 2, ARABIDOPSIS...		Potri.013G088600 [exp]	28.46	0.6971	XPO1.2
AT2G23300			Leucine-rich repeat protein ki...		Potri.007G048800 [exp]	31.44	0.6270

Compare expression of checked genes

Potri.001G028750 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.