Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14470 676 / 0 NB-ARC domain-containing disease resistance protein (.1) AT3G14460 591 / 0 LRR and NB-ARC domains-containing disease resistance protein (.1) AT3G50950 225 / 6e-61 ZAR1 HOPZ-ACTIVATED RESISTANCE 1 (.1.2) AT1G59218 211 / 1e-55 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT1G58848 211 / 1e-55 Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G46730 207 / 7e-55 NB-ARC domain-containing disease resistance protein (.1) AT5G43470 206 / 2e-54 HRT, RCY1, RPP8 RECOGNITION OF PERONOSPORA PARASITICA 8, RESISTANT TO CMV\(Y\) 1, HYPERSENSITIVE RESPONSE TO TCV, Disease resistance protein (CC-NBS-LRR class) family (.1), Disease resistance protein (CC-NBS-LRR class) family (.2) AT3G46530 205 / 2e-54 RPP13 RECOGNITION OF PERONOSPORA PARASITICA 13, NB-ARC domain-containing disease resistance protein (.1) AT1G53350 201 / 7e-53 Disease resistance protein (CC-NBS-LRR class) family (.1) AT1G58390 201 / 8e-53 Disease resistance protein (CC-NBS-LRR class) family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G007001 [exp] 1226 / 0 AT3G14470 647 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200800 [exp] 1126 / 0 AT3G14460 509 / 7e-157 LRR and NB-ARC domains-containing disease resistance protein (.1) Potri.003G200500 [exp] 1056 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G200200 [exp] 1048 / 0 AT3G14470 634 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.003G055600 [exp] 1041 / 0 AT3G14470 615 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126806 [exp] 1035 / 0 AT3G14470 587 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T127106 [exp] 1035 / 0 AT3G14470 594 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.T126706 [exp] 1021 / 0 AT3G14470 565 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Potri.007G137101 [exp] 1001 / 0 AT3G14470 616 / 0.0 NB-ARC domain-containing disease resistance protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024173 [exp] 1074 / 0 AT3G14460 681 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10007261 [exp] 1057 / 0 AT3G14460 654 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10039540 [exp] 1038 / 0 AT3G14470 727 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10039509 [exp] 1030 / 0 AT3G14460 613 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10005321 [exp] 691 / 0 AT3G14460 607 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10026109 [exp] 667 / 0 AT3G14470 598 / 0.0 NB-ARC domain-containing disease resistance protein (.1) Lus10026132 [exp] 625 / 0 AT3G14460 594 / 0.0 LRR and NB-ARC domains-containing disease resistance protein (.1) Lus10016316 [exp] 525 / 2e-165 AT3G14470 494 / 6e-156 NB-ARC domain-containing disease resistance protein (.1) Lus10002736 [exp] 383 / 2e-121 AT3G14470 317 / 1e-98 NB-ARC domain-containing disease resistance protein (.1) Lus10005218 [exp] 370 / 2e-108 AT3G14470 379 / 2e-113 NB-ARC domain-containing disease resistance protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00931 [poplar] [flax] NB-ARC NB-ARC domain
Representative CDS sequence Show only first row Show all	>Potri.001G029300.5 pacid=42790457 polypeptide=Potri.001G029300.5.p locus=Potri.001G029300 ID=Potri.001G029300.5.v4.1 annot-version=v4.1 ATGGCTGCAGCTTTGGTAGGAGGGTCAATTCTCTCTGCTTTCCTTCAAGTTTTGTTTGATAGAATGGCGTCTCGTGAGGTTTTAGACTTCTTCAAGGAGC GAAAACTCAATGAAAGGCTGCTTAAGAAGTTGAAGATTATGATGATATCTGTCAATGGAGTGCTTGATGATGCAGAGGAGAAGCAGGTTACCAAGCCAGC TGTGAAAGAGTGGCTTGATGAGCTTAAAGATGCCGTGTATGAAGCAGATGACTTGTTGGATGAGATTGCTTATGAAGCTCTGCGGTTGGAGGTGGAAGCT GGATCACAAATCACCGCTAATCAGGCGCTTAGAACTTTGTCTTCTAGTAAAAGGGAGAAGGAAGAGATGGAAGAAAAGTTGGGAGAGATCCTTGATAGAC TTGAATATTTAGTACAACAAAAGGATGCCCTCGGTTTGAGGGAGGGTATGAGAGAAAAAGCATCATTACAGAAAACACCAACAACTTCTTTGGTGGATGA TATTGATGTTTGCGGTAGGGATCATGATAAGGAAGCTATACTGAAGTTGTTGCTATCTGATGTTTCAAATGGGAAAAACTTAGATGTGATTCCCATTGTT GGTATGGGTGGAATCGGTAAGACTACTCTTGCTCAGCTTGTCTACAATGACCGCGGAGTGCAGGAGTCATTTGATCTCAAAGCATGGGTCTGTGTTTCAG AAAATTTTGATGTTTTCAAGATAACAAATGATGTCCTTGAGGAGTTCGGTTCGGTGATTGATGATGCCAGGACTCCAAATCAGCTTCAACTAAAGCTAAG GGAGAGATTAATGGGGCAAAAATTTCTGCTTGTTTTAGATGATGTTTGGAATAATAGCTATGCTGATTGGGATATTCTAATGAGACCTCTAAAGTCGGCA GGACAGGGAAGCAAGATTATTGTCACGACACGCAATGAAAGCGTAGCATCAGTCATGCGTACTGTTGCAACTTACCGTCTAAAGGAATTAACCAACGATG ATTGCTGGTTCTTGTTTGCAAAACATGCATTTGATGATGGAAATTCATCCCTACATCCAGATTTGCAAGTAATTGGAAGAGAAATAGTGAGAAAATGTAA AGGCCTGCCGCTAGCTGCAAAAACACTTGGGGGTCTCCTTCGCTCCAAAAGAGATGCTAAGGAGTGGATGAAGATATTGAGGAGTGATATGTGGGATTTA CCAATTGACAACATTCTTCTAGCTTTGAGATTGAGTTATCGTTATCTCCCATCGCATCTAAAACAATGTTTTGCTTACTCTGCAATATTTCCTAAAGGTT ATGAATTTCAGAAGGAGGAATTACTATTTCTATGGATGGCAGAGGGTTTTATAAACCAACCTAAAGGAAACATGGAGATGGAAGATTTGGGCGAAGAGTA TTTTCATGATCTTGTATCAAGGTCATTTTTTCAACAATCAAGTGGCTATACATCGTCATTTGTTATGCATGACCTAATAAATGACTTAGCAAAATTTGTT TCTGGAGAATTTTGCTGCAGGTTAGAGGATGACAATTCAAGTAAGATTAGTAAAAAGGCCCGTCATTTATCGTTTGCAAGAATACATGGTGATGGCACTA TGATACTGAAAGGTGCTTGTGAAGCCCACTTTTTGCGTACACTTTTGCTTTTCAATCGGTCACACTGGCAGCAGGGGAGACATGTTGGAAATGGGGCAAT GAACAATTTATTTCTGACATTCAGGTGCTTACGGGCACTGTCTCTGTCTCTGGATCATGATGTAGTTGGTTTGCCTAATTCAATTGGTAATCTGAAGCAT TTGCGATACTTGAATCTATCTGCAACATCAATAGTAAGGTTGCCTGACTCTGTGAGTACTTTATATAATTTGCAAACATTAATTTTGCATGAATGCAAAG ACCTCATTGAGTTGCCTACCAGCATGATGAAATTGATCAACTTATGCCATCTTGATATTACAAAAACAAAGTTACAAGCGATGCCATCACAATTAAGTAA GCTAACAAAACTCCTTAAGTTAACTGATTTCTTTTTGGGAAAACAAAGTGGGTCAAGCATTAATGAGTTGGGGAAGCTCCAGCACCTAAGAGGAACGCTC CGCATTTGGAATCTTCAAAATGTCATGGATGCTCAGAATGCAATAAAAGCCAATTTGAAGGGTAAACAACTGCTTAAGGAGTTGGAGTTAACTTGGAAAG GTGATACTAATGATTCACTGCATGAAAGACTCGTACTGGAGCAATTACAGCCTCATATGAACATTGAATGCCTTTCAATTGTTGGTTATATGGGTACTAG ATTTCCAGATTGGATAGGAGATTCCTCGTTCTCAAATATAGTTTCCTTGAAGCTCATTGGCTGTAAATACTGCTCCTCCTTACCTCCACTTGGACAGCTA GTGTCTCTGAAAGATCTCCTGATCAAAGAATTTGGTGAAATCATGGTTGTTGGTCCCGAGTTCTATGGAAGTTGCACATCCATGAAGAAGCCATTTGGAT CCCTTGAAATTTTGACATTTGAAGGGATGTCAAAATGGCACGAGTGGTTTTTCTATTCAGAAGATGATGAAGGTGGAGCTTTCCCTCGCCTCCAAAAGCT TTACATAAATTGTTGTCCACACCTAACAAAAGTCCTGCCCAACTGTCAACTTCCCTGTTTAACAACACTTGAGATCAGGAAATGTCCACAGCTTGTGTCT TTACTTCCAAGGATTCCGAGCTTCCTTATAGTAGAGGTGGAAGATGATTCTCGAGAAGTGCTGCTAGAGAAATTGTCTTCTGGGCAGCACAGCCTCAAAC TTGACCGACTGAAGTCCCTTGACTCTCTATTAAAGGGATGCTTGTCCACTACAGAAAAAATTCTAGTAAGGAACTGTGATTCACTTGAGAGCTTCCCACT GGACCAGTGTCCTCAGTTAAAGCAAGTTCGGATCCATGGATGTCCAAATCTCCAATCCCTTTCTTCACATGAAGTAGCTCGTGGGGATGTCACATCTCTC TATTCCTTGGATATCAGGGACTGCCCCCATTTGGTATCTTTTCCCGAAGGAGGATTAGCTGCTCCAAATATGACAGTGCTTCGGTTGCGGAACTGCTCTA AGATGAAGTCACTGCCTGAATATATGGACTCCCTTCTCCCATCCCTCGTGGAAATTTCTTTAAGAAGGTGTCCAGAACTTGAGTCATTTCCAAAAGGGGG ATTGCCCTGCAAATTAGAATCACTTGAGGTCTATGCATGCAAGAAACTCATTAATGCCTGCTCAGAATGGAATTTGCAAAAACTCCACTCTCTTTCACGC TTAACTATTGGTATGTGCAAAGAAGTGGAATCCTTCCCTGAAAGTTTGCGGCTTCCACCCAGTCTTTGTTCTCTTAAAATCTCAGAACTCCAAAATCTGA AATCGCTGGACTACAGGGAACTTCAACACCTTACCTCTCTTAGAGAATTGATGATTGATGGTTGCCCTAAGCTCCAGTCATTGCCAGAAGGACTGCCTGC CACTCTTACCTCTTTTAAAATATGGGCACTTCAGAATCTGGAGTCTCTAGGACACAAGGGATTTCAACACCTCACTGCTCTTAGAGAATTGGAGATTGAG AGCTGCCCCATGCTGCAGTCCATGCCAGAAGAACCATTGCCCCCCTCTCTCTCATCTCTATATATCCGGGAGTGTCCTTTGCTGGAAAGTAGGTGTCAGC GAGAGAAGGGGGAAGACTGGCACAAGATTCAGCATGTTCCTAACATACATATCTATGCAACATGCTGA
AA sequence Show only first row Show all	>Potri.001G029300.5 pacid=42790457 polypeptide=Potri.001G029300.5.p locus=Potri.001G029300 ID=Potri.001G029300.5.v4.1 annot-version=v4.1 MAAALVGGSILSAFLQVLFDRMASREVLDFFKERKLNERLLKKLKIMMISVNGVLDDAEEKQVTKPAVKEWLDELKDAVYEADDLLDEIAYEALRLEVEA GSQITANQALRTLSSSKREKEEMEEKLGEILDRLEYLVQQKDALGLREGMREKASLQKTPTTSLVDDIDVCGRDHDKEAILKLLLSDVSNGKNLDVIPIV GMGGIGKTTLAQLVYNDRGVQESFDLKAWVCVSENFDVFKITNDVLEEFGSVIDDARTPNQLQLKLRERLMGQKFLLVLDDVWNNSYADWDILMRPLKSA GQGSKIIVTTRNESVASVMRTVATYRLKELTNDDCWFLFAKHAFDDGNSSLHPDLQVIGREIVRKCKGLPLAAKTLGGLLRSKRDAKEWMKILRSDMWDL PIDNILLALRLSYRYLPSHLKQCFAYSAIFPKGYEFQKEELLFLWMAEGFINQPKGNMEMEDLGEEYFHDLVSRSFFQQSSGYTSSFVMHDLINDLAKFV SGEFCCRLEDDNSSKISKKARHLSFARIHGDGTMILKGACEAHFLRTLLLFNRSHWQQGRHVGNGAMNNLFLTFRCLRALSLSLDHDVVGLPNSIGNLKH LRYLNLSATSIVRLPDSVSTLYNLQTLILHECKDLIELPTSMMKLINLCHLDITKTKLQAMPSQLSKLTKLLKLTDFFLGKQSGSSINELGKLQHLRGTL RIWNLQNVMDAQNAIKANLKGKQLLKELELTWKGDTNDSLHERLVLEQLQPHMNIECLSIVGYMGTRFPDWIGDSSFSNIVSLKLIGCKYCSSLPPLGQL VSLKDLLIKEFGEIMVVGPEFYGSCTSMKKPFGSLEILTFEGMSKWHEWFFYSEDDEGGAFPRLQKLYINCCPHLTKVLPNCQLPCLTTLEIRKCPQLVS LLPRIPSFLIVEVEDDSREVLLEKLSSGQHSLKLDRLKSLDSLLKGCLSTTEKILVRNCDSLESFPLDQCPQLKQVRIHGCPNLQSLSSHEVARGDVTSL YSLDIRDCPHLVSFPEGGLAAPNMTVLRLRNCSKMKSLPEYMDSLLPSLVEISLRRCPELESFPKGGLPCKLESLEVYACKKLINACSEWNLQKLHSLSR LTIGMCKEVESFPESLRLPPSLCSLKISELQNLKSLDYRELQHLTSLRELMIDGCPKLQSLPEGLPATLTSFKIWALQNLESLGHKGFQHLTALRELEIE SCPMLQSMPEEPLPPSLSSLYIRECPLLESRCQREKGEDWHKIQHVPNIHIYATC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G14470			NB-ARC domain-containing disea...		Potri.001G029300 [exp]	0	1
AT5G05570			transducin family protein / WD...		Potri.016G117800 [exp]	1.41	0.8643
AT1G33050			unknown protein		Potri.001G452300 [exp]	2.44	0.8382
AT5G49960			unknown protein		Potri.019G097000 [exp]	2.44	0.8354
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.004G141700 [exp]	2.82	0.8719
AT5G47690			binding (.1.2.3)		Potri.016G005400 [exp]	6.63	0.8366
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.012G137500 [exp]	7.48	0.8278
AT1G24706		EMB2793, AtTHO2	EMBRYO DEFECTIVE 2793, THO2 (....		Potri.013G085000 [exp]	13.78	0.8361
AT2G22010		RKP	related to KPC1 (.1.2)		Potri.007G081900 [exp]	14.42	0.8230
AT5G47690			binding (.1.2.3)		Potri.006G004750 [exp]	15.19	0.8335
AT4G27190			NB-ARC domain-containing disea...		Potri.013G027300 [exp]	16.24	0.7985

Compare expression of checked genes

Potri.001G029300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.