Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G11450 679 / 0 DnaJ domain ;Myb-like DNA-binding domain (.1) AT5G06110 662 / 0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) AT5G45420 91 / 6e-20 MYB maMYB membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) AT1G74250 73 / 4e-13 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G59725 53 / 3e-07 DNAJ heat shock family protein (.1) AT5G16650 49 / 1e-06 Chaperone DnaJ-domain superfamily protein (.1) AT1G10350 50 / 2e-06 DNAJ heat shock family protein (.1) AT5G25530 49 / 8e-06 DNAJ heat shock family protein (.1) AT2G20560 49 / 8e-06 DNAJ heat shock family protein (.1) AT3G08910 49 / 9e-06 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G190000 [exp] 1004 / 0 AT3G11450 663 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1) Potri.001G147000 [exp] 94 / 5e-21 AT5G45420 234 / 1e-75 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Potri.009G018400 [exp] 79 / 3e-15 AT1G74250 460 / 2e-155 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.006G246700 [exp] 53 / 4e-07 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.018G034600 [exp] 52 / 5e-07 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.010G035000 [exp] 51 / 1e-06 AT1G10350 429 / 1e-151 DNAJ heat shock family protein (.1) Potri.002G103900 [exp] 49 / 1e-06 AT2G33735 147 / 2e-46 Chaperone DnaJ-domain superfamily protein (.1) Potri.013G078200 [exp] 48 / 1e-06 AT5G16650 198 / 6e-67 Chaperone DnaJ-domain superfamily protein (.1) Potri.011G057601 [exp] 50 / 2e-06 AT2G20560 444 / 2e-157 DNAJ heat shock family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020118 [exp] 804 / 0 AT5G06110 749 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10026919 [exp] 801 / 0 AT5G06110 752 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10020117 [exp] 794 / 0 AT5G06110 736 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10026920 [exp] 719 / 0 AT5G06110 681 / 0.0 DnaJ domain ;Myb-like DNA-binding domain (.1.2) Lus10039841 [exp] 89 / 5e-19 AT5G45420 249 / 2e-81 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Lus10018605 [exp] 88 / 8e-19 AT5G45420 247 / 7e-81 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Lus10034688 [exp] 72 / 1e-12 AT1G74250 468 / 5e-158 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10017846 [exp] 66 / 4e-11 AT1G74250 464 / 1e-156 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10036429 [exp] 56 / 2e-09 AT5G45420 93 / 4e-24 membrane anchored MYB, Duplicated homeodomain-like superfamily protein (.1) Lus10041254 [exp] 53 / 5e-07 AT5G25530 464 / 2e-165 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G035800.1 pacid=42790715 polypeptide=Potri.001G035800.1.p locus=Potri.001G035800 ID=Potri.001G035800.1.v4.1 annot-version=v4.1 ATGGCCATCCAAACTAGTTTGCAGCTTATTTCTTACTCACAAGAGCTCGTAGACGGACAGCCAGTACATGTTTCTTCAAACTGCCTTCCAATCAAAGCTT TAAAATATGAACCAGCTGGGCATGCTTATCACTCTGCTGCTTTAAAACTCCTTGGTTGGGAGGAGGAAGGCACAAAGAGTGAAGATCAGAAAGTGTCCAA AGACAAAGAACAATCGTATATGCCTTCATCTGAATCCTATAGCACCAAAGGTAAAAAGAAAACTGGATCTGGAGATAAGCAACAGGATCACTATGCCATG CTGGGTTTAGGCCATTTGAGATATCTTGCCACAGAAGAACAGATACGGAAAAGTTATCGTGAGGTTGCTTTGAAGTATCACCCAGACAAACAGGCTGCTA TTCTTCTTGCTGAGGAAACTGAGGCAGCAAAACAAGCAAAAAAGAATGAAATAGAGAGCCACTTTAAAGCTATCCAAGAAGCGTATGAAGCTTTGATTGA TCCTGTGAAGAGAAGAATATACGACTCCACAGATGAGTTTGATGATGAAATTCCAACTGACTGTGCCCCTCAAGACTTCTTCAAGGTTTTTGGTCCTGCT TTTATGAGGAATGGGCGGTGGTCAGTTAACCAACCAATCCCATCTTTAGGTGATGAGAACACTTCTTTAAAAGAAGTAGATAGCTTTTATAATTTTTGGT ACAGCTTTAAAAGCTGGAGAGAGTTCCCTCATGCGGATGAATTTGATCTTGAGCAAGCTGAGTCTCGTGACCATAAGAGATGGATGGAGAGGCAAAATGC AAAGCTTTCAGAAAAGGCTAGAAAGGAAGACTATGCACGGATACGCACTCTTGTTGACAGTGCTTATAAAAGAGACCCAAGAATATTGAGGAGAAAGGAG GAGGGGAAAGCTGAGAAGCAAAGAAGGAAGGAAGCTAAGTTTTTGGCAAAAAGGTTGCAAGAAGAAGAAGCTGCAAGGGCTGCTGAAGAGGAGAGACGCC AGAAAGAAGAGGAGGGAAAACGCGCTGCTGAAGCTGCTTTACAGCAGAAGAAGTTAAAGGAGAAAGAGAAGAAGCTTCTGCGTAAAGAGCGGAGTCGCCT TCGCACTCTTTCAGCACCTGTTCTGCCTCAGTGTTTGCTCAATCTTGGTGAGGATGATGTGGAAAATCTTTGTATGTCACTGGATATTGAGCAGCTTAGG AGTTTATGTGACAGAATGGAAGGTAAAGAAGTGGTAGAGCAAGCAAAAGTGCTGAGAGATGCATGTGGATGTGATCATGATTCCAGTAGCAGTAAACTGG GTGAGAAAAAGATTTCACAGCAGAATGGCTCTTTGAATTCCAATGGAAGAGCCCCATCAAGCAGCTCTGGAAAGAAGGAGAAACCTTGGAGCCGAGAAGA AATTGAGCTTCTGAGGAAAGGAATTCAGAAATATCCTAAAGGAACATCTCGGAGGTGGGAGGTTATTTCAGAGTACATTGGTACAGGAAGATCTGTTGAA GAAATTCTGAAAGCAACTAAAACTGTCCTACTTCAGAAGCCTGATACAGCTAAAGCTTTTGATTCTTTTCTCGAAAAGAGGAAACCTGCACAATCCATTG CATCTCCGCTTACAACTAGAGACGAAATAGAAGGAGCATCAGCGATGCAGGCACCTGAAAGTAGTGTTGCAAAGATTGCTGAAGAAGAGTCTTCAAGAGA CACAGACAAGCAGAAAACTGATGACATGGTTACTGCAAATGGGGTGTCTTCGAGTGCAGACCAAGACGTGTGGTCTGCGGTGCAAGAAAGAGCCTTGGTT CAGGCTCTAAAAACCTTCCCAAAAGAAATCTCTCAACGTTGGGAGCGGGTTGCTGCTGCTGTTCCTGGGAAAACTGCAAACCAGTGCAGGAAAAAATTGG CTTTGCTGAAGGAGAACTTTAGAAACAAGAAAAGTACGGCTTAG
AA sequence Show only first row Show all	>Potri.001G035800.1 pacid=42790715 polypeptide=Potri.001G035800.1.p locus=Potri.001G035800 ID=Potri.001G035800.1.v4.1 annot-version=v4.1 MAIQTSLQLISYSQELVDGQPVHVSSNCLPIKALKYEPAGHAYHSAALKLLGWEEEGTKSEDQKVSKDKEQSYMPSSESYSTKGKKKTGSGDKQQDHYAM LGLGHLRYLATEEQIRKSYREVALKYHPDKQAAILLAEETEAAKQAKKNEIESHFKAIQEAYEALIDPVKRRIYDSTDEFDDEIPTDCAPQDFFKVFGPA FMRNGRWSVNQPIPSLGDENTSLKEVDSFYNFWYSFKSWREFPHADEFDLEQAESRDHKRWMERQNAKLSEKARKEDYARIRTLVDSAYKRDPRILRRKE EGKAEKQRRKEAKFLAKRLQEEEAARAAEEERRQKEEEGKRAAEAALQQKKLKEKEKKLLRKERSRLRTLSAPVLPQCLLNLGEDDVENLCMSLDIEQLR SLCDRMEGKEVVEQAKVLRDACGCDHDSSSSKLGEKKISQQNGSLNSNGRAPSSSSGKKEKPWSREEIELLRKGIQKYPKGTSRRWEVISEYIGTGRSVE EILKATKTVLLQKPDTAKAFDSFLEKRKPAQSIASPLTTRDEIEGASAMQAPESSVAKIAEEESSRDTDKQKTDDMVTANGVSSSADQDVWSAVQERALV QALKTFPKEISQRWERVAAAVPGKTANQCRKKLALLKENFRNKKSTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G11450			DnaJ domain ;Myb-like DNA-bind...		Potri.001G035800 [exp]	0	1
AT5G50210		SUFE3, OLD5, QS	SULFUR E 3, ONSET OF LEAF DEAT...		Potri.012G089500 [exp]	3.74	0.8042
AT5G08420			RNA-binding KH domain-containi...		Potri.007G065500 [exp]	4.47	0.7286
AT2G31410			unknown protein		Potri.014G145600 [exp]	8.00	0.7135
AT3G61760		ADL1B	DYNAMIN-like 1B (.1)		Potri.002G171200 [exp]	8.36	0.7473
AT3G06190		ATBPM2	BTB-POZ and MATH domain 2 (.1....		Potri.008G200700 [exp]	12.96	0.7295
AT1G62830		ATLSD1, ATSWP1,...	ARABIDOPSIS LYSINE-SPECIFIC HI...		Potri.002G013100 [exp]	15.00	0.6562
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Potri.010G195000 [exp]	18.97	0.7027
AT4G38710			glycine-rich protein (.1.2)		Potri.004G169100 [exp]	20.39	0.6540
AT3G51270			protein serine/threonine kinas...		Potri.017G001100 [exp]	20.63	0.7299
AT3G11450			DnaJ domain ;Myb-like DNA-bind...		Potri.003G190000 [exp]	21.00	0.6809

Compare expression of checked genes

Potri.001G035800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.