Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16060 278 / 1e-91 AP2_ERF ADAP ARIA-interacting double AP2 domain protein (.1.2) AT1G79700 268 / 4e-88 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT3G54320 243 / 1e-76 AP2_ERF ATWRI1, ASML1, WRI1 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) AT5G57390 214 / 3e-64 AP2_ERF PLT5, EMK, CHO1, AIL5 PLETHORA 5, EMBRYOMAKER, CHOTTO 1, AINTEGUMENTA-like 5 (.1) AT1G72570 204 / 4e-62 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G17430 208 / 7e-62 AP2_ERF BBM BABY BOOM, Integrase-type DNA-binding superfamily protein (.1) AT3G20840 207 / 9e-62 AP2_ERF PLT1 PLETHORA 1, Integrase-type DNA-binding superfamily protein (.1) AT1G51190 207 / 1e-61 AP2_ERF PLT2 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) AT5G65510 202 / 3e-60 AP2_ERF PLT7, AIL7 PLETHORA 7, AINTEGUMENTA-like 7 (.1) AT4G37750 197 / 4e-58 AP2_ERF DRG, CKC1, ANT DRAGON, COMPLEMENTING A PROTEIN KINASE C MUTANT 1, AINTEGUMENTA, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G185300 [exp] 455 / 5e-161 AT1G16060 291 / 5e-97 ARIA-interacting double AP2 domain protein (.1.2) Potri.018G102200 [exp] 342 / 2e-116 AT1G16060 289 / 5e-96 ARIA-interacting double AP2 domain protein (.1.2) Potri.006G179900 [exp] 305 / 7e-102 AT1G16060 276 / 3e-91 ARIA-interacting double AP2 domain protein (.1.2) Potri.017G078600 [exp] 243 / 5e-77 AT3G54320 289 / 2e-94 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.010G092800 [exp] 242 / 2e-76 AT3G54320 259 / 2e-82 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.010G247200 [exp] 237 / 2e-74 AT3G54320 337 / 8e-113 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.008G011900 [exp] 229 / 4e-72 AT3G54320 359 / 3e-122 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Potri.003G205700 [exp] 214 / 2e-64 AT1G51190 635 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1) Potri.001G018400 [exp] 214 / 3e-64 AT1G51190 639 / 0.0 PLETHORA 2, Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001553 [exp] 327 / 3e-110 AT1G16060 331 / 3e-112 ARIA-interacting double AP2 domain protein (.1.2) Lus10024101 [exp] 306 / 9e-102 AT1G16060 308 / 1e-103 ARIA-interacting double AP2 domain protein (.1.2) Lus10041618 [exp] 298 / 8e-99 AT1G79700 310 / 1e-104 Integrase-type DNA-binding superfamily protein (.1.2) Lus10036719 [exp] 243 / 2e-76 AT3G54320 288 / 3e-93 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10037209 [exp] 242 / 5e-76 AT3G54320 286 / 1e-92 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10013268 [exp] 233 / 2e-74 AT3G54320 275 / 3e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10030792 [exp] 236 / 9e-74 AT3G54320 280 / 6e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10030671 [exp] 236 / 9e-74 AT3G54320 280 / 5e-90 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10005253 [exp] 234 / 4e-73 AT3G54320 282 / 6e-91 WRINKLED 1, WRINKLED, ACTIVATOR OF SPO\(MIN\)::LUC1, Integrase-type DNA-binding superfamily protein (.1.2.3) Lus10005513 [exp] 231 / 4e-73 AT1G79700 227 / 5e-72 Integrase-type DNA-binding superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G041500.1 pacid=42789927 polypeptide=Potri.001G041500.1.p locus=Potri.001G041500 ID=Potri.001G041500.1.v4.1 annot-version=v4.1 ATGGGAAAAACATCAAAGCAAAGCCTGAAGGACACTGCGAACACTAGCACAAATCCTACAAACAAGGTGAAGCGGACACGAAAAACTGTGCCACGAGACT CTCCTCCTCAACGTAGCTCCATCTACAGAGGCGTGACGAGGCATCGATGGACCGGGCGTTATGAGGCTCATTTGTGGGATAAGAACAGCTGGAATGAATC ACAGAACAAGAAAGGAAGACAAGTGTATCTAGGGGCCTATGATGATGAAGAAGCGGCTGCACATGCCTATGACTTGGCAGCATTAAAGTACTGGGGACAG GATACCATCCTCAATTTCCCTTGGTCAACTTACAAAGAAGAGCTCAAAGAGATGGAGGGTCAGTCAAAAGAAGAATATATTGGATCGTTGAGGAGAAAAA GTAGTGGATTTTCACGCGGGGTGTCCAAATATAGAGGCGTGGCCAGACACCATCATAATGGGAGATGGGAAGCTCGAATTGGCAGAGTTTTCGGCAACAA ATACCTCTACCTTGGAACATATGCCACTCAAGAAGAAGCAGCAACAGCATATGATATGGCAGCTATAGAGTACCGTGGAATTAATGCTGTTACAAACTTT GACCTAAGCCGCTACATCAAATGGCTACGTCCCAATAACCATAATAATGTTAATAATCCTCAACAAAACCCTAATTGTGATGCTAATCCGATTCAAAACC TCGACCAAAAGATTGAATTGGATTTCATGCCCCATCAACAGAGTTCGAATGTTAATGGGACGGAAGAGCTGACTGATCCAGCCCGGTCTGGTGGCACTGG TGGCTCGGCATCATCAGCATTAGGGCTTTTGTTGCAATCCTCCAAGTTCAAGGAAATATTGGAAAGAACATCGGCTGCAGATTGCCCCTTGACGCCACTA CCCCCCTTGACGCCACCCGAGTCGGATCGTGATCCGCCACGCCGGAGCTTCCCGGATGACATCCAAACCGTCTTCGATTGCCAAGACTCTAGTAGTTACA CTGATGACGATGATATTAATATTTTCGGGGAGCTAAATCCATTTGCTTCGCCGATTTTCCACTACGAATTGGATGGACAGGAGATGGTATTTGGCCCAAA TAAGTCTAATATCCTCACAACATAA
AA sequence Show only first row Show all	>Potri.001G041500.1 pacid=42789927 polypeptide=Potri.001G041500.1.p locus=Potri.001G041500 ID=Potri.001G041500.1.v4.1 annot-version=v4.1 MGKTSKQSLKDTANTSTNPTNKVKRTRKTVPRDSPPQRSSIYRGVTRHRWTGRYEAHLWDKNSWNESQNKKGRQVYLGAYDDEEAAAHAYDLAALKYWGQ DTILNFPWSTYKEELKEMEGQSKEEYIGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGINAVTNF DLSRYIKWLRPNNHNNVNNPQQNPNCDANPIQNLDQKIELDFMPHQQSSNVNGTEELTDPARSGGTGGSASSALGLLLQSSKFKEILERTSAADCPLTPL PPLTPPESDRDPPRRSFPDDIQTVFDCQDSSSYTDDDDINIFGELNPFASPIFHYELDGQEMVFGPNKSNILTT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16060	AP2_ERF	ADAP	ARIA-interacting double AP2 do...		Potri.001G041500 [exp]	0	1
AT1G01120		KCS1	3-ketoacyl-CoA synthase 1 (.1)		Potri.002G178000 [exp]	2.00	0.9168	Pt-KCS1.1
AT5G12970			Calcium-dependent lipid-bindin...		Potri.003G210801 [exp]	3.16	0.9016
AT4G37630		CYCD5;1	cyclin d5;1 (.1.2)		Potri.007G055300 [exp]	3.87	0.8943	CYCD5.1
AT3G43720			Bifunctional inhibitor/lipid-t...		Potri.009G158100 [exp]	4.47	0.8861
AT3G45070			P-loop containing nucleoside t...		Potri.010G138400 [exp]	5.47	0.8842
AT2G43360		BIOB, BIO2	BIOTIN AUXOTROPH B, BIOTIN AUX...		Potri.007G126400 [exp]	6.85	0.8045	BIO2.1
AT3G17650		YSL5, PDE321	pigment defective 321, YELLOW ...		Potri.004G069300 [exp]	6.92	0.8749
AT5G41040			HXXXD-type acyl-transferase fa...		Potri.015G100800 [exp]	9.79	0.8525
					Potri.004G114450 [exp]	10.00	0.8419
					Potri.006G166850 [exp]	10.19	0.7703

Compare expression of checked genes

Potri.001G041500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.