Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G04730 1058 / 0 CTF18 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G22010 73 / 9e-13 ATRFC1 replication factor C 1, replication factor C1 (.1) AT1G77620 70 / 7e-12 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G77470 61 / 2e-09 EMB2810, RFC5, RFC3 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) AT1G21690 60 / 4e-09 RFC4, EMB1968 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) AT1G63160 50 / 6e-06 EMB2811, RFC2 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G213900 [exp] 83 / 6e-16 AT5G22010 1117 / 0.0 replication factor C 1, replication factor C1 (.1) Potri.002G081200 [exp] 59 / 9e-09 AT1G77470 577 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Potri.005G181300 [exp] 57 / 4e-08 AT1G21690 551 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Potri.002G084700 [exp] 55 / 3e-07 AT1G77620 634 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.003G123200 [exp] 48 / 3e-05 AT1G63160 587 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Potri.012G088200 [exp] 44 / 0.0008 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043134 [exp] 1078 / 0 AT1G04730 946 / 0.0 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10032615 [exp] 270 / 2e-81 AT1G04730 237 / 3e-70 CHROMOSOME TRANSMISSION FIDELITY 18, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10013372 [exp] 99 / 1e-20 AT5G22010 1128 / 0.0 replication factor C 1, replication factor C1 (.1) Lus10018144 [exp] 59 / 6e-09 AT1G77470 564 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10028543 [exp] 58 / 1e-08 AT1G21690 563 / 0.0 replication factor C 4, embryo defective 1968, ATPase family associated with various cellular activities (AAA) Lus10025689 [exp] 57 / 3e-08 AT1G77470 568 / 0.0 replication factor C 5, EMBRYO DEFECTIVE 2810, replication factor C subunit 3 (.1) Lus10024504 [exp] 51 / 2e-06 AT1G63160 615 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10008003 [exp] 51 / 3e-06 AT1G63160 605 / 0.0 EMBRYO DEFECTIVE 2811, replication factor C 2 (.1) Lus10009233 [exp] 44 / 0.0004 AT2G45500 670 / 0.0 AAA-type ATPase family protein (.1.2) Lus10008835 [exp] 44 / 0.0008 AT4G27680 649 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA)
Representative CDS sequence Show only first row Show all	>Potri.001G050300.2 pacid=42793696 polypeptide=Potri.001G050300.2.p locus=Potri.001G050300 ID=Potri.001G050300.2.v4.1 annot-version=v4.1 ATGGAGATGGACATTCCTCTCCCGGACGAGCTTGAATTACTTGAAGCTAACTCTCACTTCTACCAAGACTACCTAGACCCTCCCTCACCCGATCCCTGCA CTTACTCGCCTCAACTACTACCGGAACAATCACCTCCTCAATCACCCTCCGCTCCCCAAATTAACGACTACAACAAGCGCCCTAGGTCCGACGGTCCGGA TTCACCAAATCAGGAAGACGCTGTCCTCTTCGACGAGAAGAGAAGCAAAATCGACGATGATACGGGACCGGAGGTCGACGATGAGGACTGGCTCCGGCAG GTGCAGGATAGGAACGGAGGAAACGAGGAGGAGAGGGTGGAAGTTGTTGTCGAGGAGGAGGAGAAGGAGAAGATCGTGTCTAGATACGTGTCGGAGATTG ACGGCGATTTTATTCCAGTGACGGCGCCTAGTGGTGGCGATAGGGTTTATGCAAAAATATGTAGAGTGGATACGGAACAGGGAGCGAAGAAATTGGATTT CAAATCGCAATCAAATGGTCTTATATCGGAACCGATTAATGTTCTTTTGCAAAGAATGGAGCAAGAAGCTTTTACCAAGGCCTTGCAAGCTAGTTCTGAA GATCAGAATGATGACATTCTTCCAGAAACACAAGTGATGCATGAAAAATTATGGGTGGACAAATATGCTCCAAATTCATTTACTGAGCTGCTTAGTGATG AGCAGACAAATCGCGAGGTCCTCTTATGGTTTAAACAATGGGATTCTTGTGTTTTTGGATCTGATATTAGGAGTACATCAGATGACATTTTGTCTGCTTT AAGGCGTCATTCTTCTATCGCTCAACACCCAAAACCTTCTGATTCAACTTTCTTCAGCAAGAACAAAGGAAATATATGGAGTAGAGGGAATTTTAGACAC TCTAATAATCTGGAGCAAGAAAATAGTAAATCAAAAGGATTTCAGGACTCGTGGACCAAGAAGTCAAGGCCTACTGGTCCACCAGAACAGAAGATCCTTT TGCTTTGTGGTCCCCCCGGGCTTGGAAAGACCACACTTGCACATGTAGCTGCTAAGCATTGTGGATATCGAGTTGTGGAGATTAATGCTAGCGATGATAG GTCTTCGTCAACAATCGAAGCTAAGATTCTTGATGTGGTTCAGATGAACTCTGTGATGGCTGACTCAAGACCGAAATGCCTGGTGATTGATGAAATAGAT GGAGCACTTAGTGATGGAAAAGGTGCTGTGGAGGTTCTTCTAAAAATGGTTTTTTCTGAAAGGAAGTCAGATACTGGGAAGGAAAATGTCACTAAAGGAG AGCAATTTGGAAGGGTATCCTCAAAAAAAGGGCGGAAAACAGCATCTTTGACGAGACCTGTGATTTGCATATGTAATGACATATATGCACCTGCCTTGAG GCCATTACGTCAGGTTGCAAAGGTCCATTTATTTGTTCAGCCGACTGTTAGCCGTGTTGTAAGCAGGCTCAAATATATATGTAACAAGGAGGGAATGAAG ACTAGTTCCATTGCACTTGCCGCACTTGCAGATTACACTGGATGTGATATACGCTCATGCCTGAACACCCTCCAGTTTCTCAACAAGAAGAGAGAAGTTC TTAACGTGCTGGAGATCAGTTCCCAGGTGGTTGGTCGAAAGGACATGTCAAGAAGTGTTTTTGATATTTGGAAGGAGATTTTCCAAAAGAGAAAAATGAA GCAGGATAGAAAATCTAAAGGTAGCTGTGGCAGCATGAGCAATGAATTTGACTCTTTGCTCTCCCTTGTATCTAATCGTGGTGATTATGATGTGATTTTG GATGGGATCTATGAAAACATCTTGCAGCTCCATTACCATGATCCAGTGATGCAAAAGACAGTCAAGTGTTTCAATAGTCTTGGTGTTTCTGATGTGATTC ACCAATATATTATGCGTTCACAGCAAATGCCCCTTTATGCTTATCAGCCTTGCATTGCGATTTCTATACATCAACAGGTAGCACAAATTCAAAAACCAAA TATTGAGTGGCCAAGGTCTTATCAAAGATACCGAACTGTATTGATGGAAAAGAGGGACAAGTTAAGGTCTTGGCAGAACAAAATTCCACCACATATTTCA AGGCACTTGTCTACTAAATCTTTCGTAGAAGACTCTGTTTCTCCCATCTTACATATCATCTCTCCTCCAACACTAAGGCCGGTGGCATTGCACTTATTAA CAGAAAGAGAGAAGAATGATCTAGCTCAGTTAGTGAGCACAATGGTATCCTATTCCATGACATATAAGAATATCAAGTCAGATCATCTTTCCTGTAAGCA GGAAAACGAAGCTGTTTTAGATGCTGCGTCGCTTTCTGTTGATCCTCCCATTCATGAATTCATTAACTTCAAGGGCTATAGTTCTGGTCATTATGCACTT CCCTTAGCCGTGAAGCAGGTTTTGGTGCACGAGGTGGAAAAGCATAAGATTTTGCAAGCAAGTAGATCTGTACATTTAACAGATGGGTGCAATAAACAAA ATATGTACTTGGTAGAGCGGGAGAGTGCAGTGCAGTCTGTCAAAATTAACCATGCAGCTGCATTTTCTGGTAACAGCATCGGCAATCAAAAAAGCATGAT AAATTCTGGGCAATGTGTTCCAAGTGACTCAGCAACATCTCCGATCATGGATTCTAGTACAAGGGCCTTGTCCAATGTAAAGCTGAAATCCTCAGGAAAT CCAAAGAAGCCTCCTAGAAGCTCTACCAGCTTCTTTGACAGGTTTAGGAAAGCAAACAGTAAGGGTTCTCAAAGTACTGACAGTGCTGGATGGGAGACAA CCACCTTGGAAAGAGATTCACGTCCTCTGATATTCAAATTTAATGAGGGTTTTACAAATGCTGTAAAAAGGCCAGTACGGATGCGTGAATTTCTGCTATG A
AA sequence Show only first row Show all	>Potri.001G050300.2 pacid=42793696 polypeptide=Potri.001G050300.2.p locus=Potri.001G050300 ID=Potri.001G050300.2.v4.1 annot-version=v4.1 MEMDIPLPDELELLEANSHFYQDYLDPPSPDPCTYSPQLLPEQSPPQSPSAPQINDYNKRPRSDGPDSPNQEDAVLFDEKRSKIDDDTGPEVDDEDWLRQ VQDRNGGNEEERVEVVVEEEEKEKIVSRYVSEIDGDFIPVTAPSGGDRVYAKICRVDTEQGAKKLDFKSQSNGLISEPINVLLQRMEQEAFTKALQASSE DQNDDILPETQVMHEKLWVDKYAPNSFTELLSDEQTNREVLLWFKQWDSCVFGSDIRSTSDDILSALRRHSSIAQHPKPSDSTFFSKNKGNIWSRGNFRH SNNLEQENSKSKGFQDSWTKKSRPTGPPEQKILLLCGPPGLGKTTLAHVAAKHCGYRVVEINASDDRSSSTIEAKILDVVQMNSVMADSRPKCLVIDEID GALSDGKGAVEVLLKMVFSERKSDTGKENVTKGEQFGRVSSKKGRKTASLTRPVICICNDIYAPALRPLRQVAKVHLFVQPTVSRVVSRLKYICNKEGMK TSSIALAALADYTGCDIRSCLNTLQFLNKKREVLNVLEISSQVVGRKDMSRSVFDIWKEIFQKRKMKQDRKSKGSCGSMSNEFDSLLSLVSNRGDYDVIL DGIYENILQLHYHDPVMQKTVKCFNSLGVSDVIHQYIMRSQQMPLYAYQPCIAISIHQQVAQIQKPNIEWPRSYQRYRTVLMEKRDKLRSWQNKIPPHIS RHLSTKSFVEDSVSPILHIISPPTLRPVALHLLTEREKNDLAQLVSTMVSYSMTYKNIKSDHLSCKQENEAVLDAASLSVDPPIHEFINFKGYSSGHYAL PLAVKQVLVHEVEKHKILQASRSVHLTDGCNKQNMYLVERESAVQSVKINHAAAFSGNSIGNQKSMINSGQCVPSDSATSPIMDSSTRALSNVKLKSSGN PKKPPRSSTSFFDRFRKANSKGSQSTDSAGWETTTLERDSRPLIFKFNEGFTNAVKRPVRMREFLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Potri.001G050300 [exp]	0	1
AT5G19330		ARIA	ARM repeat protein interacting...		Potri.005G210000 [exp]	2.82	0.9175
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.014G023000 [exp]	3.60	0.8935	CYCD1.4
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G156314 [exp]	4.47	0.9149
AT2G41450			N-acetyltransferases;N-acetylt...		Potri.006G045100 [exp]	5.09	0.9171
AT4G02060		MCM7, PRL	PROLIFERA, Minichromosome main...		Potri.014G121000 [exp]	5.74	0.9159	PRL.2
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G159200 [exp]	8.48	0.8979
AT4G16970			Protein kinase superfamily pro...		Potri.001G151900 [exp]	10.95	0.9146
AT2G16440		MCM4	MINICHROMOSOME MAINTENANCE 4, ...		Potri.009G121500 [exp]	12.24	0.9146
AT5G52910		ATIM	timeless family protein (.1)		Potri.015G024300 [exp]	13.22	0.9097
AT1G44900		ATMCM2, MCM2	MINICHROMOSOME MAINTENANCE 2, ...		Potri.001G070500 [exp]	13.56	0.9074

Compare expression of checked genes

Potri.001G050300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.