Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G28160 120 / 1e-32 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G13910 119 / 2e-32 AP2_ERF LEAFY PETIOLE (LEP) LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) AT5G18560 99 / 8e-24 AP2_ERF PUCHI Integrase-type DNA-binding superfamily protein (.1) AT1G24590 88 / 7e-20 AP2_ERF ESR2, DRNL, SOB2, DRN-LIKE FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) AT1G12980 86 / 7e-19 AP2_ERF DRN, ESR1 ENHANCER OF SHOOT REGENERATION 1, DORNROSCHEN, Integrase-type DNA-binding superfamily protein (.1) AT1G12890 83 / 1e-18 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G53170 77 / 9e-17 AP2_ERF ATERF8, ATERF-8 ETHYLENE RESPONSE ELEMENT BINDING FACTOR 4, ethylene response factor 8 (.1) AT3G15210 76 / 4e-16 AP2_ERF ATERF4, RAP2.5, ATERF-4 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) AT1G28370 74 / 5e-16 AP2_ERF AtERF11 ERF domain protein 11 (.1) AT5G44210 75 / 7e-16 AP2_ERF AtERF9, ATERF-9 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G161000 [exp] 373 / 1e-130 AT1G28160 128 / 1e-35 Integrase-type DNA-binding superfamily protein (.1) Potri.001G157100 [exp] 146 / 3e-42 AT5G13910 101 / 6e-26 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Potri.003G077700 [exp] 122 / 4e-33 AT5G13910 118 / 3e-32 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Potri.008G215600 [exp] 97 / 7e-23 AT5G18560 176 / 4e-52 Integrase-type DNA-binding superfamily protein (.1) Potri.008G186300 [exp] 90 / 3e-20 AT1G24590 69 / 1e-12 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Potri.010G046600 [exp] 87 / 2e-19 AT1G24590 71 / 2e-13 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Potri.019G088000 [exp] 79 / 5e-18 AT1G12890 104 / 1e-28 Integrase-type DNA-binding superfamily protein (.1) Potri.004G047600 [exp] 81 / 1e-17 AT5G44210 99 / 2e-25 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Potri.005G219600 [exp] 77 / 5e-17 AT1G50640 85 / 2e-20 ethylene responsive element binding factor 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035129 [exp] 107 / 2e-27 AT5G13910 152 / 7e-46 LEAFY PETIOLE, Integrase-type DNA-binding superfamily protein (.1) Lus10033963 [exp] 94 / 4e-22 AT5G18560 186 / 4e-56 Integrase-type DNA-binding superfamily protein (.1) Lus10035076 [exp] 91 / 5e-21 AT1G24590 143 / 2e-40 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10017907 [exp] 83 / 4e-18 AT1G24590 134 / 1e-37 FOR SUPPRESSOR OF PHYTOCHROMEB-4 2, ENHANCER OF SHOOT REGENERATION 2, DORNROSCHEN-like (.1) Lus10015415 [exp] 76 / 1e-15 AT5G44210 134 / 8e-39 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10033664 [exp] 74 / 1e-15 AT3G15210 119 / 2e-33 RELATED TO AP2 5, ethylene responsive element binding factor 4 (.1) Lus10039857 [exp] 74 / 3e-15 AT5G44210 138 / 8e-41 ERF DOMAIN PROTEIN- 9, erf domain protein 9 (.1) Lus10043182 [exp] 69 / 1e-13 AT3G20310 111 / 6e-30 ethylene response factor 7 (.1) Lus10031526 [exp] 69 / 2e-13 AT1G50640 112 / 2e-30 ethylene responsive element binding factor 3 (.1) Lus10026053 [exp] 69 / 2e-13 AT5G18560 97 / 7e-24 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G069300.1 pacid=42792696 polypeptide=Potri.001G069300.1.p locus=Potri.001G069300 ID=Potri.001G069300.1.v4.1 annot-version=v4.1 ATGGATTTTACTTACTCGACAAAAACCAACTCATCACCCTCTCCTTCAAAGACCAAAAGAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGAACCAGC AAGAACAACAAGAAGTGAGGTTCTTAGGGGTAAGGAGAAGGCCATGGGGTAGATATGCTGCAGAAATAAGAGACCCTTCAACAAAAGAGAGGCACTGGCT TGGTACTTTTGACACAGCTGAGGAAGCTGCCTTGGCTTATGACCGTGCAGCCAGGTCCATGCGGGGCTCCAAAGCACGCACCAACTTTGTCTACTCAGAC ATGCCTCCTGCCTCCTCTGTAACTTGCATTATCTCACCAGACGAGTCACAACATGACAATTCGGCCCTCTTTGCTCCTCCTCCACAACACAATACTCATC AAAATGACACCAACTGCCAGCAGCTCTACTTCTCTCAGGATCAGCATCCCTTCAATGCTCATGCTTATGGTAACAGTAATAGCAACTGGTTAGCAGGTGG AGCAGGCTGGGTTCAAGGATTTGGAGCTGGGGCTGGAGATGGGCCTTGTGGGTCTTATGAGCCCAACAGTGCTGGCAGTCTGGATGTCGCTAGTGGGCTT AACTATCTCTCTAACACGGACAACATTGAGCTCCCGCCTTTGCCTCCTGATGTCAACTCTAGCTGTTATGGGTGTGATATGGGTCGTGAATTTTGGAATG ACACAGGGTTTCTCGGGTTTCAAGAGGAACAGCTAGATGATGTGAATGGGCTTGAAGTGAGTGGGTCCATATTGGGCTTTGATTCTAATGAATTTGGGCT GCACGGCTCGTTATTTGGGATCGTGCCATCGGTATCGAATACGGTCACAGACGGGTTTGATTTGGGCTCATCATCTACCTTTTATTTTTAA
AA sequence Show only first row Show all	>Potri.001G069300.1 pacid=42792696 polypeptide=Potri.001G069300.1.p locus=Potri.001G069300 ID=Potri.001G069300.1.v4.1 annot-version=v4.1 MDFTYSTKTNSSPSPSKTKRKQQQQQQQQQQNQQEQQEVRFLGVRRRPWGRYAAEIRDPSTKERHWLGTFDTAEEAALAYDRAARSMRGSKARTNFVYSD MPPASSVTCIISPDESQHDNSALFAPPPQHNTHQNDTNCQQLYFSQDQHPFNAHAYGNSNSNWLAGGAGWVQGFGAGAGDGPCGSYEPNSAGSLDVASGL NYLSNTDNIELPPLPPDVNSSCYGCDMGREFWNDTGFLGFQEEQLDDVNGLEVSGSILGFDSNEFGLHGSLFGIVPSVSNTVTDGFDLGSSSTFYF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G28160	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G069300 [exp]	0	1
AT3G15115			unknown protein		Potri.001G372800 [exp]	3.16	0.6992
AT2G24400			SAUR-like auxin-responsive pro...		Potri.010G253800 [exp]	7.61	0.7373
					Potri.003G212150 [exp]	7.74	0.6592
AT2G44500			O-fucosyltransferase family pr...		Potri.009G022500 [exp]	9.27	0.7516
AT5G62170			unknown protein		Potri.012G132900 [exp]	9.38	0.7013
AT1G68090		ANN5, ANNAT5	ANNEXIN ARABIDOPSIS THALIANA 5...		Potri.008G139500 [exp]	14.96	0.6849	Pt-ANN5.2
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.008G054733 [exp]	16.43	0.6845
AT3G16340		ABCG29, ATPDR1,...	ATP-binding cassette G29, plei...		Potri.003G049600 [exp]	27.54	0.6309
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.006G141500 [exp]	33.76	0.6244
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.019G014384 [exp]	34.58	0.6013

Compare expression of checked genes

Potri.001G069300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.