Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07580 145 / 1e-42 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G61600 127 / 7e-36 AP2_ERF ERF104 ethylene response factor 104 (.1) AT5G51190 124 / 5e-35 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G61590 123 / 7e-35 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G17490 124 / 3e-34 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT5G47230 122 / 3e-33 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT5G47220 107 / 4e-28 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT4G17500 105 / 2e-27 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G43410 100 / 2e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT3G23240 100 / 1e-25 AP2_ERF ERF1, ATERF1 ethylene response factor 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G151000 [exp] 345 / 2e-121 AT5G07580 164 / 6e-50 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079800 [exp] 156 / 1e-46 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.003G150800 [exp] 149 / 7e-44 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.003G080600 [exp] 123 / 2e-33 AT4G17490 159 / 3e-46 ethylene responsive element binding factor 6 (.1) Potri.001G154200 [exp] 120 / 2e-32 AT4G17490 159 / 2e-46 ethylene responsive element binding factor 6 (.1) Potri.010G072400 [exp] 104 / 3e-28 AT3G23230 85 / 1e-21 Integrase-type DNA-binding superfamily protein (.1) Potri.004G051700 [exp] 105 / 4e-28 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) Potri.002G039200 [exp] 102 / 1e-27 AT3G23230 113 / 7e-33 Integrase-type DNA-binding superfamily protein (.1) Potri.004G051800 [exp] 106 / 2e-27 AT4G18450 127 / 7e-35 Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032498 [exp] 148 / 3e-44 AT5G07580 144 / 1e-42 Integrase-type DNA-binding superfamily protein (.1) Lus10042995 [exp] 134 / 6e-39 AT5G07580 129 / 1e-36 Integrase-type DNA-binding superfamily protein (.1) Lus10042996 [exp] 131 / 3e-37 AT5G51190 189 / 6e-60 Integrase-type DNA-binding superfamily protein (.1) Lus10032499 [exp] 129 / 2e-36 AT5G51190 186 / 8e-59 Integrase-type DNA-binding superfamily protein (.1) Lus10013959 [exp] 103 / 8e-28 AT3G23240 124 / 2e-36 ethylene response factor 1 (.1) Lus10029333 [exp] 103 / 4e-27 AT2G44840 147 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10025430 [exp] 102 / 4e-27 AT3G23240 132 / 6e-39 ethylene response factor 1 (.1) Lus10016212 [exp] 103 / 8e-27 AT2G44840 146 / 1e-43 ethylene-responsive element binding factor 13 (.1) Lus10024883 [exp] 101 / 8e-27 AT3G23230 130 / 3e-39 Integrase-type DNA-binding superfamily protein (.1) Lus10022936 [exp] 100 / 1e-26 AT3G23230 114 / 9e-34 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G079600.1 pacid=42792713 polypeptide=Potri.001G079600.1.p locus=Potri.001G079600 ID=Potri.001G079600.1.v4.1 annot-version=v4.1 ATGGCAACCCCAGAAGAATCCTCCACGTTAGAACTCATAAGACAACATCTTCTCGGAGACTTCACCTCCACAGATGAGTTCATCAGTAATCTTGAGTCCA CTGTAGCCAGTATATCTGTTAAACTAGAGAACTCCCTATCTGGGTCTGAATCCAACTCCCCAGTATCAGACCAAAGTTACTATAGCACCCAAGAAACCTG TAGCTTTGAAATAAAATCTGAAATCATAGATTTGACACCTCCTGAACCCATGTTTTCAGATTCAAGTAATCAGTCCCCACCACCTGAACTCGTAAAGATG ACAGATAGAGAAGAGACAATATTAAGGCATTACAGAGGGGTCCGAAGAAGGCCATGGGGAAAGTTTGCGGCGGAGATCCGTGACCCAACCAGGAAGGGTA GTCGGGTTTGGTTAGGTACTTTTGACAGTGATATCGATGCCGCAAGAGCTTATGACTGTGCTGCATTCAAAATGAGGGGCAGGAAAGCAATCCTGAATTT TCCTTTGGAGGCTGGACTGTCCAGCTCGCCTCCGGCCACGGGCAGGAAGAGGAGAAGAGTGAAGAGAGAGGAGGTGCTGCCAGAATCTGTTGATGTCTCG CCGGAAAATTGGGATGTAGAGTGGAGTGGAGAGGAAGTGGAGGGCTTTTCTGACGAGGAGCAACTGTCACCGTTATCTCGAAAGCCAGTTTTGCTTTACG TGTCAGTAGATTAG
AA sequence Show only first row Show all	>Potri.001G079600.1 pacid=42792713 polypeptide=Potri.001G079600.1.p locus=Potri.001G079600 ID=Potri.001G079600.1.v4.1 annot-version=v4.1 MATPEESSTLELIRQHLLGDFTSTDEFISNLESTVASISVKLENSLSGSESNSPVSDQSYYSTQETCSFEIKSEIIDLTPPEPMFSDSSNQSPPPELVKM TDREETILRHYRGVRRRPWGKFAAEIRDPTRKGSRVWLGTFDSDIDAARAYDCAAFKMRGRKAILNFPLEAGLSSSPPATGRKRRRVKREEVLPESVDVS PENWDVEWSGEEVEGFSDEEQLSPLSRKPVLLYVSVD

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G07580	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G079600 [exp]	0	1
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Potri.006G255600 [exp]	1.41	0.9839
AT1G63970		MECPS, ISPF	2C-METHYL-D-ERYTHRITOL 2,4-CYC...		Potri.003G132400 [exp]	3.16	0.9742
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Potri.018G026500 [exp]	4.58	0.9723
AT5G64480			unknown protein		Potri.001G286200 [exp]	8.48	0.9657
AT1G75350		EMB2184	embryo defective 2184, Ribosom...		Potri.002G033300 [exp]	9.48	0.9691
AT3G44890		RP19, RPL9	ribosomal protein L9 (.1)		Potri.004G217000 [exp]	9.89	0.9641	Pt-RPL9.3
AT2G33450			Ribosomal L28 family (.1)		Potri.010G068500 [exp]	10.77	0.9717
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Potri.006G101500 [exp]	10.95	0.9457	FAD3.2
AT5G01410		PDX1, ATPDX1.3,...	REDUCED SUGAR RESPONSE 4, ARAB...		Potri.006G100500 [exp]	11.22	0.9300	Pt-PDX1.1
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Potri.009G053300 [exp]	12.40	0.9536

Compare expression of checked genes

Potri.001G079600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.