Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G17500 187 / 2e-58 AP2_ERF ATERF-1, AtERF1 ethylene responsive element binding factor 1 (.1) AT5G47220 175 / 3e-54 AP2_ERF ATERF-2, ERF2, ATERF2 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1) AT2G44840 170 / 2e-52 AP2_ERF ATERF13, EREBP ethylene-responsive element binding factor 13 (.1) AT5G47230 118 / 2e-31 AP2_ERF ATERF5, ATERF-5, ERF5 ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR- 5, ethylene responsive element binding factor 5 (.1) AT5G51190 107 / 2e-28 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G17490 108 / 5e-28 AP2_ERF ERF-6-6, ATERF6 ethylene responsive element binding factor 6 (.1) AT5G13330 103 / 5e-27 AP2_ERF RAP2.6L related to AP2 6l (.1) AT5G07580 105 / 7e-27 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G33710 103 / 1e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1.2) AT3G23230 99 / 5e-26 AP2_ERF ERF98 Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G150700 [exp] 377 / 1e-133 AT4G17500 190 / 9e-60 ethylene responsive element binding factor 1 (.1) Potri.003G081200 [exp] 224 / 5e-73 AT4G17500 211 / 1e-67 ethylene responsive element binding factor 1 (.1) Potri.001G154100 [exp] 216 / 7e-70 AT4G17500 221 / 2e-71 ethylene responsive element binding factor 1 (.1) Potri.014G046600 [exp] 170 / 2e-52 AT2G44840 196 / 3e-63 ethylene-responsive element binding factor 13 (.1) Potri.014G047000 [exp] 139 / 1e-40 AT2G44840 160 / 2e-49 ethylene-responsive element binding factor 13 (.1) Potri.014G046700 [exp] 130 / 9e-37 AT2G44840 168 / 3e-52 ethylene-responsive element binding factor 13 (.1) Potri.003G150800 [exp] 119 / 3e-32 AT5G51190 185 / 7e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.001G079800 [exp] 117 / 2e-31 AT5G51190 186 / 2e-58 Integrase-type DNA-binding superfamily protein (.1) Potri.004G051700 [exp] 112 / 1e-30 AT5G47220 111 / 1e-30 ETHYLENE RESPONSE FACTOR- 2, ethylene responsive element binding factor 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004368 [exp] 195 / 2e-61 AT4G17500 268 / 7e-90 ethylene responsive element binding factor 1 (.1) Lus10040165 [exp] 191 / 1e-59 AT4G17500 260 / 2e-86 ethylene responsive element binding factor 1 (.1) Lus10016211 [exp] 135 / 1e-38 AT2G44840 158 / 2e-48 ethylene-responsive element binding factor 13 (.1) Lus10029333 [exp] 127 / 5e-36 AT2G44840 147 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10029334 [exp] 127 / 7e-36 AT2G44840 152 / 1e-46 ethylene-responsive element binding factor 13 (.1) Lus10016210 [exp] 126 / 1e-35 AT2G44840 154 / 7e-47 ethylene-responsive element binding factor 13 (.1) Lus10016225 [exp] 125 / 5e-35 AT2G44840 154 / 4e-47 ethylene-responsive element binding factor 13 (.1) Lus10016209 [exp] 125 / 5e-35 AT2G44840 148 / 1e-44 ethylene-responsive element binding factor 13 (.1) Lus10016224 [exp] 123 / 2e-34 AT2G44840 143 / 1e-42 ethylene-responsive element binding factor 13 (.1) Lus10029319 [exp] 120 / 1e-33 AT2G44840 142 / 6e-43 ethylene-responsive element binding factor 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G079900.1 pacid=42791531 polypeptide=Potri.001G079900.1.p locus=Potri.001G079900 ID=Potri.001G079900.1.v4.1 annot-version=v4.1 ATGAACGAGATTAGCTCATTGTGTGAGTTCAGTGCTCTGTCTCATCATCATCAGCATAGAAGTACAAGCTTTAATTCTCTTATTTCTTGCTTAAACGAGA CATGGGGTGACTTGCCATTAAGGGTTGATGATTCTGAAGATATGGTCATTTACAATTTCCTCAGAGATGCTGTTTGTTGTGGATGGTCTCCGTTGGATTT GAGCACTTCAACTACCACTACTTCTTCTACCACCACCACCACCACGACGACGACGACGACAATAACAACTAATGTTGTTAAAGCCGAGCCGAAAGATGAG CTGGATCTGGAAGCCGAGCCCATTAAATTGGTTCAAGAATCTAGCTTGAATATGGAAGCTGTTGTTACTAAGAAGGTGGTGACTAAGGGAAGACATTATA GAGGAGTGAGGCAAAGGCCGTGGGGGAAGTTTGCGGCTGAGACAAGGGACCCAGCTAAGAATGGCGCGAGAGTGTGGCTTGGGACTTACGAGACGGCAAA GGAAGCGGCTTTGGCTTATGATAGAGCGGCTTATAGAATGCGTGGCTCAAAGGCTCTCCTTAATTTTCCACACAAGATTGGGTCTAATGAGCCGGATCCG GTTAGGATCACTGCCAAGCGTCGACAGCCAGATACAGGTCTGACGGCTGTGGATACTGGCTCGGCTAAGATGAGGAAAATGTTGGTGGATGAGGGGGCTG AGTTGGAGAGGGGGGTGGGATATAGTGTTTTTCAGGTAGGACACCATAAGGGGTTAATGCCAGTTGGCGAGCAATTATTGGCTAGTTAG
AA sequence Show only first row Show all	>Potri.001G079900.1 pacid=42791531 polypeptide=Potri.001G079900.1.p locus=Potri.001G079900 ID=Potri.001G079900.1.v4.1 annot-version=v4.1 MNEISSLCEFSALSHHHQHRSTSFNSLISCLNETWGDLPLRVDDSEDMVIYNFLRDAVCCGWSPLDLSTSTTTTSSTTTTTTTTTTTITTNVVKAEPKDE LDLEAEPIKLVQESSLNMEAVVTKKVVTKGRHYRGVRQRPWGKFAAETRDPAKNGARVWLGTYETAKEAALAYDRAAYRMRGSKALLNFPHKIGSNEPDP VRITAKRRQPDTGLTAVDTGSAKMRKMLVDEGAELERGVGYSVFQVGHHKGLMPVGEQLLAS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Potri.001G079900 [exp]	0	1
AT5G11590	AP2_ERF	DREB3, TINY2	TINY2, Integrase-type DNA-bind...		Potri.006G238600 [exp]	1.73	0.9011
AT4G13030			P-loop containing nucleoside t...		Potri.002G247400 [exp]	3.00	0.8639
AT4G02425			unknown protein		Potri.014G129500 [exp]	6.48	0.8065
					Potri.001G078100 [exp]	13.26	0.8316
AT3G12320			unknown protein		Potri.003G193800 [exp]	14.24	0.8431
AT2G48030			DNAse I-like superfamily prote...		Potri.014G136900 [exp]	14.45	0.8136
AT5G54470	CO		B-box type zinc finger family ...		Potri.001G414700 [exp]	14.49	0.8244
AT4G21350		PUB8, B80	plant U-box 8 (.1)		Potri.011G033300 [exp]	15.09	0.8294
AT3G22530			unknown protein		Potri.008G154100 [exp]	15.09	0.8473
AT4G23860			PHD finger protein-related (.1...		Potri.003G140000 [exp]	18.00	0.7916

Compare expression of checked genes

Potri.001G079900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.