Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G61620 177 / 8e-53 MYB myb-like transcription factor family protein (.1) AT5G47390 153 / 2e-43 MYB myb-like transcription factor family protein (.1) AT5G56840 142 / 2e-40 MYB myb-like transcription factor family protein (.1) AT1G70000 139 / 4e-39 MYB myb-like transcription factor family protein (.1.2) AT3G16350 117 / 9e-30 MYB Homeodomain-like superfamily protein (.1) AT2G38090 109 / 2e-27 MYB MYB-R Duplicated homeodomain-like superfamily protein (.1) AT5G01200 108 / 2e-27 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G58900 107 / 7e-27 MYB Homeodomain-like transcriptional regulator (.1) AT1G49010 106 / 3e-26 MYB Duplicated homeodomain-like superfamily protein (.1) AT5G04760 103 / 4e-26 MYB Duplicated homeodomain-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G155300 [exp] 149 / 6e-42 AT5G47390 340 / 7e-116 myb-like transcription factor family protein (.1) Potri.003G079500 [exp] 149 / 6e-42 AT5G47390 355 / 4e-122 myb-like transcription factor family protein (.1) Potri.006G230500 [exp] 140 / 7e-40 AT5G56840 167 / 1e-51 myb-like transcription factor family protein (.1) Potri.003G049100 [exp] 143 / 2e-39 AT3G16350 311 / 8e-104 Homeodomain-like superfamily protein (.1) Potri.008G191800 [exp] 142 / 2e-39 AT1G70000 241 / 5e-79 myb-like transcription factor family protein (.1.2) Potri.006G150300 [exp] 141 / 2e-39 AT5G56840 160 / 5e-48 myb-like transcription factor family protein (.1) Potri.010G039233 [exp] 140 / 4e-39 AT1G70000 230 / 7e-75 myb-like transcription factor family protein (.1.2) Potri.001G189800 [exp] 141 / 9e-39 AT3G16350 307 / 2e-102 Homeodomain-like superfamily protein (.1) Potri.012G060300 [exp] 119 / 3e-31 AT1G49010 217 / 3e-69 Duplicated homeodomain-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040181 [exp] 148 / 2e-41 AT5G47390 398 / 1e-138 myb-like transcription factor family protein (.1) Lus10004384 [exp] 147 / 4e-41 AT5G47390 394 / 3e-137 myb-like transcription factor family protein (.1) Lus10037560 [exp] 143 / 3e-39 AT3G16350 303 / 8e-101 Homeodomain-like superfamily protein (.1) Lus10013289 [exp] 141 / 3e-39 AT1G70000 235 / 5e-77 myb-like transcription factor family protein (.1.2) Lus10030813 [exp] 136 / 2e-37 AT1G70000 229 / 7e-75 myb-like transcription factor family protein (.1.2) Lus10038279 [exp] 134 / 5e-36 AT3G16350 279 / 5e-91 Homeodomain-like superfamily protein (.1) Lus10025822 [exp] 134 / 7e-36 AT3G16350 283 / 2e-92 Homeodomain-like superfamily protein (.1) Lus10036678 [exp] 119 / 8e-32 AT1G70000 171 / 1e-52 myb-like transcription factor family protein (.1.2) Lus10006826 [exp] 120 / 2e-31 AT3G16350 235 / 1e-74 Homeodomain-like superfamily protein (.1) Lus10010733 [exp] 112 / 8e-29 AT1G70000 182 / 1e-56 myb-like transcription factor family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G080300.1 pacid=42790749 polypeptide=Potri.001G080300.1.p locus=Potri.001G080300 ID=Potri.001G080300.1.v4.1 annot-version=v4.1 ATGGTAAAAGAGGCAGCAAGAAAGTGCTCCCATTGTGGCCAAAATGGCCATAACTCAAGAACATGTACTAAGGATTGTATCAAATTGTTTGGGGTTAGCA TTGAAAAACGTGAACAAACAATTAAAGGAAGTGCTAGCTTAGATAACATAGCGTCCTTAGATGACATTCACGGTGCACATCATGTCGATCCCGGCTATAG TTCCGACGGCGTTATCGGTTCTAAGAGAGGCAGAACAGCGTATACACGGAAGAAAGGCAAGCCATGGACCGAGGAGGAGCATAGAACATTTTTATCCGGT CTAAGCAATCTTGGCAAGGGCGATTGGAGAGGCATTTCGAAGAAATTTGTGATTACTAGGACCCCAAGTCAGGTTGCTAGTCATGCACAGAAGTATTTTC TGAGACAGCAGGCTTCAAATGAGAAGAAGAAACGTAGATCAAGCCTCTTTGACATGACCTTCAAAGGAACTGATCTGGCTTCTCATCAGGATGCTCCGAA ACTGCCTTTAATTAAGACTTGTGGGAGTTCATCACAGGCTAGCACCTCTTCAGCTTCACCATTGAGGAAAGCTGGCGAGGATATCCCATCACAAGCTATC AGCCCATTACACCTCATCAACCAATTTCCTTTGCTTTGCTTGCACAATCCCCAGGTCATGAGTCCTACTGTCGCAGCCGGTACTGGCGTTTCAAACTACA ATCCTTGCATGCAACGAGTCCTTGCCAATGGACGGCGGAGCTTTCCGGCAAGTAAAGCAGCACCCTTTGTCTCCATGATGAACTATCCAAGGGCCTACCA TCCTTACATGCTTAACAGCCCTGCAAGCCTGGCTGGTTGCGCACCTTGTATTGCCCATCAACCATCCGGTATCCCTTCACCAAGTTCATTTCCTCAGAGC TTTTCTCCACAAGGTGCTTCAACTTCATTAGCAAAAATGGAAGACCCTCTTGAGCTTAAAATTGGACAACCCCCTAAATCCCCCCAAGGAGCAAATATAT CATCCCCAGCATCTGGTGCCATTAGTGTTATATGA
AA sequence Show only first row Show all	>Potri.001G080300.1 pacid=42790749 polypeptide=Potri.001G080300.1.p locus=Potri.001G080300 ID=Potri.001G080300.1.v4.1 annot-version=v4.1 MVKEAARKCSHCGQNGHNSRTCTKDCIKLFGVSIEKREQTIKGSASLDNIASLDDIHGAHHVDPGYSSDGVIGSKRGRTAYTRKKGKPWTEEEHRTFLSG LSNLGKGDWRGISKKFVITRTPSQVASHAQKYFLRQQASNEKKKRRSSLFDMTFKGTDLASHQDAPKLPLIKTCGSSSQASTSSASPLRKAGEDIPSQAI SPLHLINQFPLLCLHNPQVMSPTVAAGTGVSNYNPCMQRVLANGRRSFPASKAAPFVSMMNYPRAYHPYMLNSPASLAGCAPCIAHQPSGIPSPSSFPQS FSPQGASTSLAKMEDPLELKIGQPPKSPQGANISSPASGAISVI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G61620	MYB		myb-like transcription factor ...		Potri.001G080300 [exp]	0	1
					Potri.001G426850 [exp]	2.82	0.9565
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211866 [exp]	4.00	0.9339
AT5G27660			Trypsin family protein with PD...		Potri.018G001550 [exp]	4.24	0.9046
AT1G11040			HSP40/DnaJ peptide-binding pro...		Potri.001G211800 [exp]	6.85	0.6460
AT1G70500			Pectin lyase-like superfamily ...		Potri.015G088600 [exp]	7.48	0.9339
AT5G55180			O-Glycosyl hydrolases family 1...		Potri.016G135900 [exp]	8.00	0.9339
					Potri.004G074602 [exp]	8.94	0.8005
AT4G02270		RHS13	root hair specific 13 (.1)		Potri.002G201800 [exp]	10.81	0.8467
AT1G64870			unknown protein		Potri.014G054900 [exp]	11.83	0.8466
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.013G060332 [exp]	15.81	0.7581

Compare expression of checked genes

Potri.001G080300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.