Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49330 204 / 3e-64 MYB PFG3, ATMYB111 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) AT2G47460 203 / 2e-63 MYB PFG1, ATMYB12 PRODUCTION OF FLAVONOL GLYCOSIDES 1, myb domain protein 12 (.1) AT3G13540 197 / 7e-63 MYB ATMYB5, ATM2 myb domain protein 5 (.1) AT4G38620 197 / 3e-62 MYB AtMYB4 myb domain protein 4 (.1) AT3G23250 197 / 4e-62 MYB ATMYB15, ATY19 myb domain protein 15 (.1.2) AT1G22640 196 / 4e-62 MYB AtMYB3 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) AT2G16720 195 / 1e-61 MYB AtY49, AtMYB7 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) AT4G09460 194 / 1e-61 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) AT1G06180 194 / 1e-61 MYB ATMYB13, AtMYBlfgn myb domain protein 13 (.1) AT2G31180 194 / 3e-61 MYB ATMYB14, Myb14at ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 14, myb domain protein 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144200 [exp] 430 / 6e-154 AT5G49330 205 / 2e-64 PRODUCTION OF FLAVONOL GLYCOSIDES 3, ARABIDOPSIS MYB DOMAIN PROTEIN 111, myb domain protein 111 (.1) Potri.003G144300 [exp] 328 / 5e-114 AT1G22640 197 / 1e-62 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Potri.014G100800 [exp] 265 / 6e-89 AT2G16720 207 / 3e-66 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Potri.002G173900 [exp] 260 / 5e-87 AT3G13540 207 / 4e-66 myb domain protein 5 (.1) Potri.003G219900 [exp] 208 / 6e-66 AT3G13540 243 / 1e-79 myb domain protein 5 (.1) Potri.005G224100 [exp] 205 / 2e-65 AT3G23250 255 / 1e-84 myb domain protein 15 (.1.2) Potri.001G005100 [exp] 206 / 4e-65 AT3G13540 247 / 1e-81 myb domain protein 5 (.1) Potri.013G056400 [exp] 204 / 8e-65 AT3G13540 226 / 2e-73 myb domain protein 5 (.1) Potri.013G056500 [exp] 204 / 9e-65 AT3G13540 236 / 4e-77 myb domain protein 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000470 [exp] 209 / 1e-66 AT2G16720 196 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10033438 [exp] 207 / 4e-66 AT1G22640 194 / 2e-61 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 3, myb domain protein 3 (.1) Lus10033889 [exp] 202 / 1e-63 AT3G23250 239 / 1e-78 myb domain protein 15 (.1.2) Lus10003557 [exp] 199 / 1e-62 AT3G23250 239 / 4e-78 myb domain protein 15 (.1.2) Lus10009448 [exp] 197 / 4e-62 AT4G09460 290 / 2e-99 myb domain protein 6 (.1) Lus10000411 [exp] 196 / 8e-62 AT4G09460 300 / 5e-103 myb domain protein 6 (.1) Lus10001548 [exp] 195 / 2e-61 AT4G09460 291 / 2e-99 myb domain protein 6 (.1) Lus10016948 [exp] 195 / 3e-61 AT4G09460 301 / 1e-103 myb domain protein 6 (.1) Lus10028435 [exp] 192 / 3e-61 AT2G16720 246 / 2e-82 ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 7, myb domain protein 7 (.1) Lus10041888 [exp] 191 / 2e-60 AT4G38620 245 / 5e-82 myb domain protein 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.001G086700.1 pacid=42789432 polypeptide=Potri.001G086700.1.p locus=Potri.001G086700 ID=Potri.001G086700.1.v4.1 annot-version=v4.1 ATGGGAAGAGCTCCATGTTGCTCTAAAGTTGGTCTGTATAGAGGTCCATGGACTACTAAAGAAGACACGTTGCTCATTAACTATATCCAGGCACATGGTG AAGGTCATTGGAGGTCTTTGCCTAAGAAAGCTGGGTTACTTAGATGTGGGAAGAGTTGCAGGCTAAGATGGATGAACTACCTTCGGCCTGATATCAAGAG AGGGAACATCACTCCTGATGAGGATGACCTTATCATCCGTCTGCATTCTCTTCTTGGTAACCGTTGGTCTCTCATTGCGGGAAGGTTGCCAGGCCGAACT GACAATGAGATCAAGAACTACTGGAACTCTCACCTTAGCAAAAGACTCAAGAACAACACGGCAAGAAATAAGTCCAAATGCATGGGGGAATCAGCTGGAA AGAGAGGTGACACTAAGGCCAACAACAAAAGGAAGCACAAGGAGGACAACGAAGGCATTAGCAGTCGAAATGGAGAGGCTACTACAAAGACCAGGATTTA TCTCCCACGGGCAACAAGGGTTTGTGCATCCTCGGTTGCAAAATATATCAATAATATTCAAAGCTTGATTGGGTCATCATCTAGTAACGCAGAGGATGGC GATCATACCAATTGGGGCATGTCTGGTCTTAAAGTTGCTAACAATGGTGGACAGGCTTGGGCTTCCAATAATGAAGAATTTGATGGTCCAATTTCTTTAC AGAAAGATATTATGTTAGATGACATCTTTGAGGAATACCAGCAACTCCTCAAGGCAGATGATCATGGTCAATTGGATTCCTTTGTGGAATCTCTTTTGGC TTAA
AA sequence Show only first row Show all	>Potri.001G086700.1 pacid=42789432 polypeptide=Potri.001G086700.1.p locus=Potri.001G086700 ID=Potri.001G086700.1.v4.1 annot-version=v4.1 MGRAPCCSKVGLYRGPWTTKEDTLLINYIQAHGEGHWRSLPKKAGLLRCGKSCRLRWMNYLRPDIKRGNITPDEDDLIIRLHSLLGNRWSLIAGRLPGRT DNEIKNYWNSHLSKRLKNNTARNKSKCMGESAGKRGDTKANNKRKHKEDNEGISSRNGEATTKTRIYLPRATRVCASSVAKYINNIQSLIGSSSSNAEDG DHTNWGMSGLKVANNGGQAWASNNEEFDGPISLQKDIMLDDIFEEYQQLLKADDHGQLDSFVESLLA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49330	MYB	PFG3, ATMYB111	PRODUCTION OF FLAVONOL GLYCOSI...		Potri.001G086700 [exp]	0	1
AT1G65060		4CL3	4-coumarate:CoA ligase 3 (.1.2...		Potri.019G049500 [exp]	1.41	0.9198	Ptr4CL4,4CL3.1
AT5G14700			NAD(P)-binding Rossmann-fold s...		Potri.017G110500 [exp]	1.73	0.9309
AT1G12050			fumarylacetoacetase, putative ...		Potri.006G009200 [exp]	2.44	0.8852
AT5G05270			Chalcone-flavanone isomerase f...		Potri.019G057800 [exp]	2.82	0.8828
AT4G21500			unknown protein		Potri.011G042600 [exp]	3.46	0.8360
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.002G207050 [exp]	5.47	0.8444
AT5G07990		CYP75B1, D501, ...	TRANSPARENT TESTA 7, CYTOCHROM...		Potri.013G073300 [exp]	7.74	0.8731	F3H1
AT4G22880		TT18, TDS4, ANS...	TANNIN DEFICIENT SEED 4, ANTHO...		Potri.001G113100 [exp]	7.74	0.8702	Pt-ANS.1
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.011G066800 [exp]	12.00	0.8454
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Potri.019G023018 [exp]	17.60	0.7540

Compare expression of checked genes

Potri.001G086700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.