Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24050 442 / 1e-156 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT1G64590 413 / 4e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G50130 268 / 7e-88 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) AT5G02540 243 / 2e-78 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT2G37540 226 / 1e-71 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23420 201 / 2e-62 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G11410 195 / 8e-60 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT4G23430 195 / 9e-60 AtTic32-IVa translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) AT4G09750 87 / 5e-19 NAD(P)-binding Rossmann-fold superfamily protein (.1) AT5G53100 86 / 1e-18 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G144100 [exp] 535 / 0 AT4G24050 397 / 9e-139 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G081102 [exp] 266 / 1e-87 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.T124508 [exp] 266 / 1e-87 AT5G50130 454 / 2e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.012G087800 [exp] 261 / 2e-85 AT5G50130 426 / 4e-150 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Potri.006G083900 [exp] 233 / 2e-74 AT5G02540 452 / 3e-161 NAD(P)-binding Rossmann-fold superfamily protein (.1) Potri.015G146600 [exp] 206 / 5e-64 AT4G23420 444 / 6e-158 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.012G143600 [exp] 202 / 3e-62 AT4G23430 401 / 2e-140 translocon at the inner envelope membrane of chloroplasts 32-IVa, NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.003G128800 [exp] 201 / 3e-62 AT4G23420 442 / 5e-157 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2), NAD(P)-binding Rossmann-fold superfamily protein (.3) Potri.001G103000 [exp] 201 / 4e-62 AT4G11410 446 / 4e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003204 [exp] 442 / 3e-156 AT4G24050 499 / 3e-179 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10017308 [exp] 419 / 3e-147 AT4G24050 495 / 1e-177 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10042088 [exp] 252 / 2e-81 AT5G50130 460 / 3e-163 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024415 [exp] 220 / 2e-69 AT5G02540 471 / 4e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10025321 [exp] 218 / 4e-69 AT5G02540 412 / 1e-145 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10023762 [exp] 214 / 3e-67 AT2G37540 429 / 8e-152 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10028781 [exp] 208 / 5e-65 AT4G11410 470 / 3e-168 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10032281 [exp] 204 / 2e-63 AT4G11410 447 / 2e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10018092 [exp] 205 / 3e-63 AT5G50130 403 / 1e-140 NAD(P)-binding Rossmann-fold superfamily protein (.1), NAD(P)-binding Rossmann-fold superfamily protein (.2) Lus10024649 [exp] 202 / 1e-62 AT4G11410 446 / 5e-159 NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00106 [poplar] [flax] adh_short short chain dehydrogenase
Representative CDS sequence Show only first row Show all	>Potri.001G086900.1 pacid=42792933 polypeptide=Potri.001G086900.1.p locus=Potri.001G086900 ID=Potri.001G086900.1.v4.1 annot-version=v4.1 ATGTTTGAAAGTTTGAAGTACCTCACCGGCTCAGCCGGAGCAAGTGGCTATGGCTCTAAGTCCACCGGCGAGCAAGTAACTGAAAACTGCGGCGATCTGC ATTCCATAACGGCCATCATCACTGGTGCCACATCCGGGATAGGAGCGGAGACGGCAAGAGTGCTGGCGAAGAGAGGTGCGAGGCTGGTGTTGCCGGCTAG GAGCCTGAAAGCCGCCGAAGATGCCAAGGCAAGAATTATATCAGAGAATCCGGATACGGAGATCATTGTTATGGGGCTTGATCTTAGCTCTCTCAACTCT GTTCGAAACTTTGTTTCAGAGTTTGAGTCCTTCGACTTGCCTCTCAATCTCCTCATAAATAATGCTGGAAAGTTTGCGCACGAGCATGCAATCTCTGAAG ATGGGATAGAGATGACCTTCGCTACTAATTTTCTAGGTCACTTTTTATTGACAAAATTGTTATTGAAGAAGATGATTGAAACAGCAAAAACAACTGGGAT TCAAGGCAGAATAGTGAATGTCTCATCGAGTATTTACAATTGGTTTTCAGGCGATCCGATCCGATATCTTGGCCAAATATCCCGAAACAAATTACGTGAT TTCGATCCTACACGTGCATATGCTCTCTCGAAGCTCGCTAATGTTTTGCACACCAAGGAGCTTGCTCAGAGACTGAAGCAAATGGAGGCCAACGTGACTG TGAATTGTGTTCATCCAGGAGTTGTAAGAACTAGACTCACTAGAGAACGAGAAGGCATAGTCACAGATATGGCATTTTTCTTGACTTCCAAGCTCTTGAA AACAATTCCTCAGGCTGCTGCGACAACATGCTATGTGGCAACACATCCGAGGCTAGTAAATGTGACTGGAAAGTACTTTTCGGATTGCAATGAAGCCTCA ACGTCCAAATTGGGATCCAACTCAACGGAAGCTGCTCGATTATGGACTGCCTCGGAAATCATGGTTTCTAGAGGCTCAAAAGCAGTTTTTGACCCACTCA CTAGTACCTTAGATTATGATATATCAATAAAACAATTCAAATAA
AA sequence Show only first row Show all	>Potri.001G086900.1 pacid=42792933 polypeptide=Potri.001G086900.1.p locus=Potri.001G086900 ID=Potri.001G086900.1.v4.1 annot-version=v4.1 MFESLKYLTGSAGASGYGSKSTGEQVTENCGDLHSITAIITGATSGIGAETARVLAKRGARLVLPARSLKAAEDAKARIISENPDTEIIVMGLDLSSLNS VRNFVSEFESFDLPLNLLINNAGKFAHEHAISEDGIEMTFATNFLGHFLLTKLLLKKMIETAKTTGIQGRIVNVSSSIYNWFSGDPIRYLGQISRNKLRD FDPTRAYALSKLANVLHTKELAQRLKQMEANVTVNCVHPGVVRTRLTREREGIVTDMAFFLTSKLLKTIPQAAATTCYVATHPRLVNVTGKYFSDCNEAS TSKLGSNSTEAARLWTASEIMVSRGSKAVFDPLTSTLDYDISIKQFK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24050			NAD(P)-binding Rossmann-fold s...		Potri.001G086900 [exp]	0	1
AT5G10970	C2H2ZnF		C2H2 and C2HC zinc fingers sup...		Potri.006G261700 [exp]	1.73	0.9499
AT2G42440	AS2		Lateral organ boundaries (LOB)...		Potri.002G041100 [exp]	2.44	0.9563
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Potri.001G431700 [exp]	6.63	0.9489
AT1G25530			Transmembrane amino acid trans...		Potri.008G118000 [exp]	7.41	0.9257
AT1G17180		ATGSTU25	glutathione S-transferase TAU ...		Potri.001G436800 [exp]	7.74	0.9488
AT5G48130			Phototropic-responsive NPH3 fa...		Potri.014G164000 [exp]	8.48	0.9292
AT2G30590	WRKY	WRKY21	WRKY DNA-binding protein 21 (....		Potri.003G111900 [exp]	9.21	0.9116
					Potri.006G126401 [exp]	10.86	0.8786
AT1G61260			Protein of unknown function (D...		Potri.015G028700 [exp]	11.04	0.8378
AT3G45080			P-loop containing nucleoside t...		Potri.011G048700 [exp]	14.83	0.9268

Compare expression of checked genes

Potri.001G086900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.