Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G64380 181 / 1e-54 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G22190 106 / 9e-27 AP2_ERF RAP2.4 related to AP2 4, Integrase-type DNA-binding superfamily protein (.1) AT1G78080 105 / 8e-26 AP2_ERF CAF1, RAP2.4, WIND1 wound induced dedifferentiation 1, related to AP2 4 (.1) AT4G39780 103 / 8e-26 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT1G36060 99 / 2e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G22200 96 / 5e-23 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT4G13620 94 / 1e-21 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT5G65130 88 / 4e-20 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G20880 86 / 8e-19 AP2_ERF AtERF53 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) AT4G28140 74 / 1e-14 AP2_ERF Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G139300 [exp] 425 / 1e-150 AT1G64380 173 / 1e-51 Integrase-type DNA-binding superfamily protein (.1) Potri.005G077300 [exp] 109 / 4e-27 AT1G78080 207 / 7e-64 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.007G090600 [exp] 107 / 2e-26 AT1G78080 205 / 4e-63 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.005G168700 [exp] 104 / 1e-25 AT1G78080 197 / 3e-60 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.002G094200 [exp] 103 / 4e-25 AT1G78080 228 / 1e-72 wound induced dedifferentiation 1, related to AP2 4 (.1) Potri.017G055400 [exp] 95 / 1e-21 AT4G13620 216 / 9e-66 Integrase-type DNA-binding superfamily protein (.1) Potri.001G315300 [exp] 90 / 6e-20 AT4G13620 194 / 3e-57 Integrase-type DNA-binding superfamily protein (.1) Potri.013G135600 [exp] 86 / 2e-18 AT2G20880 180 / 2e-52 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Potri.019G102200 [exp] 83 / 1e-17 AT2G20880 195 / 2e-58 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001898 [exp] 215 / 6e-68 AT1G64380 210 / 1e-65 Integrase-type DNA-binding superfamily protein (.1) Lus10003889 [exp] 214 / 9e-68 AT1G64380 197 / 4e-61 Integrase-type DNA-binding superfamily protein (.1) Lus10033463 [exp] 110 / 1e-27 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10020913 [exp] 110 / 1e-27 AT1G78080 246 / 2e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10019665 [exp] 100 / 8e-25 AT4G39780 209 / 1e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10016801 [exp] 102 / 1e-24 AT1G78080 245 / 3e-79 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10022497 [exp] 100 / 4e-24 AT1G78080 248 / 2e-80 wound induced dedifferentiation 1, related to AP2 4 (.1) Lus10000582 [exp] 96 / 2e-23 AT4G39780 208 / 2e-67 Integrase-type DNA-binding superfamily protein (.1) Lus10039809 [exp] 87 / 4e-19 AT2G20880 186 / 1e-55 ERF domain 53, Integrase-type DNA-binding superfamily protein (.1) Lus10007124 [exp] 86 / 5e-19 AT4G13620 181 / 1e-54 Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G092400.1 pacid=42789881 polypeptide=Potri.001G092400.1.p locus=Potri.001G092400 ID=Potri.001G092400.1.v4.1 annot-version=v4.1 ATGGAAAGAATGCAAGAAAACAACTTTTCTTTTGCATTTAACAACACAACTGATATTGGTTCCTCACTGTCACAACTTATATTGGCAGGAGGGACCAACA CTTTGGATTCAATTTTCTCGTATTGCCAAGCAGCAAGTACTCTTACTAGTCCAGCTTTTGAGCCTTTAGGCTCTTCAGTCTATCTCCGCCAGAGAGATCT ATTGCAAAAATTCAGTGAAGAAAACAGAACAAACACTTCCTTTTCTCACAATTGGCTAACAAACCCTCTTCAAAACCCTGGGCACACCAGCAATTATTTG GCTCCGATCAAGAAGAAACTATACAGAGGAGTCAGGCAGAGGCATTGGGGCAAATGGGTTGCTGAAATTAGACTCCCTCAAAACAGAATGAGAGTCTGGT TAGGTACGTATGACACAGCAGAAGCTGCAGCTTATGCTTATGATCGTGCAGCTTATAAACTTAGAGGTGAATATGCAAGATTGAATTTTCCAAATCTAAA AGATCCTACTGAGCTAGGATTTAAAGATTGTACTAGATTGGATGTTTTGAAGAGTACCGTAGATGCCAAGATTCAAGCAATTTGTCAGAAGGTTAAAAAA GAGAGGGCTAAAAAGAATGCAGGAAAGAAGAGCAATGTTAATGGTAAAAGCACAGAAAGTCAAAAACCAGTGAAGGTAGATTCAAATTCATCAACACCAT CACCGTCGTCGTCGTCGTCGTCGTCGCCGCCGCCGCCGCCTTTGCTTTCGGGCAATAATTGGGGTTGTAGTGAATTGGTGTCGCCGGCTGTTTCTGAAGA GGCGCTTTGGAAGTGTGAGAGTTCTTCTCCTTCTGTGTCTACAGATTGTCCTGTAATGGTGCCGCAAGATTCGGAATTCGAAGGCTGTTCCCTTGCAAGA ATGCCATCTTATGATCCTGAGTTAATTTGGGAGGTTCTTGCTAATTAA
AA sequence Show only first row Show all	>Potri.001G092400.1 pacid=42789881 polypeptide=Potri.001G092400.1.p locus=Potri.001G092400 ID=Potri.001G092400.1.v4.1 annot-version=v4.1 MERMQENNFSFAFNNTTDIGSSLSQLILAGGTNTLDSIFSYCQAASTLTSPAFEPLGSSVYLRQRDLLQKFSEENRTNTSFSHNWLTNPLQNPGHTSNYL APIKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTELGFKDCTRLDVLKSTVDAKIQAICQKVKK ERAKKNAGKKSNVNGKSTESQKPVKVDSNSSTPSPSSSSSSSPPPPPLLSGNNWGCSELVSPAVSEEALWKCESSSPSVSTDCPVMVPQDSEFEGCSLAR MPSYDPELIWEVLAN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G64380	AP2_ERF		Integrase-type DNA-binding sup...		Potri.001G092400 [exp]	0	1
AT1G71810			Protein kinase superfamily pro...		Potri.002G061000 [exp]	3.31	0.9370
AT5G12130		ATTERC, PDE149	PIGMENT DEFECTIVE 149, TELLURI...		Potri.006G133900 [exp]	8.71	0.9329
AT1G52510			alpha/beta-Hydrolases superfam...		Potri.001G201500 [exp]	15.19	0.9223
					Potri.016G003750 [exp]	21.16	0.8891
AT5G19220		ADG2, APL1	ADP GLUCOSE PYROPHOSPHORYLASE ...		Potri.008G195100 [exp]	22.71	0.9157	Pt-AGPL2.1
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Potri.001G242600 [exp]	26.07	0.8521
AT3G60370			FKBP-like peptidyl-prolyl cis-...		Potri.012G012600 [exp]	27.69	0.8894
AT2G02450	NAC	LOV1, ANAC034, ...	LONG VEGETATIVE PHASE 1, Arabi...		Potri.004G230800 [exp]	28.56	0.8941
AT2G44930			Plant protein of unknown funct...		Potri.012G012500 [exp]	29.18	0.8911
AT1G73060		LPA3	Low PSII Accumulation 3 (.1)		Potri.001G044000 [exp]	42.35	0.9011

Compare expression of checked genes

Potri.001G092400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.