Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G41800 729 / 0 Transmembrane amino acid transporter family protein (.1) AT1G08230 396 / 4e-135 ATGAT1 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) AT5G40780 182 / 2e-52 LHT1, LTH1 lysine histidine transporter 1 (.1.2) AT1G48640 167 / 2e-46 Transmembrane amino acid transporter family protein (.1) AT1G24400 162 / 6e-45 ATLHT2, AATL2, LHT2 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) AT1G67640 154 / 8e-42 Transmembrane amino acid transporter family protein (.1) AT2G39890 153 / 1e-41 ATPROT1, ProT1 proline transporter 1 (.1.2) AT3G55740 152 / 2e-41 ATPROT2, ProT2 proline transporter 2 (.1.2) AT1G61270 144 / 5e-38 Transmembrane amino acid transporter family protein (.1) AT2G36590 140 / 5e-37 ATPROT3, ProT3 proline transporter 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G138100 [exp] 815 / 0 AT5G41800 729 / 0.0 Transmembrane amino acid transporter family protein (.1) Potri.008G026600 [exp] 453 / 3e-157 AT1G08230 509 / 2e-179 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G026700 [exp] 421 / 8e-145 AT1G08230 490 / 7e-172 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.009G149900 [exp] 416 / 1e-142 AT1G08230 573 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.005G219300 [exp] 219 / 2e-66 AT1G08230 226 / 7e-69 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Potri.008G179000 [exp] 174 / 2e-49 AT1G24400 654 / 0.0 ARABIDOPSIS LYSINE HISTIDINE TRANSPORTER 2, AMINO ACID TRANSPORTER-LIKE PROTEIN 2, lysine histidine transporter 2 (.1) Potri.001G335200 [exp] 170 / 9e-48 AT5G40780 697 / 0.0 lysine histidine transporter 1 (.1.2) Potri.010G055800 [exp] 168 / 3e-47 AT5G40780 670 / 0.0 lysine histidine transporter 1 (.1.2) Potri.015G091600 [exp] 163 / 3e-45 AT5G40780 610 / 0.0 lysine histidine transporter 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003903 [exp] 679 / 0 AT5G41800 695 / 0.0 Transmembrane amino acid transporter family protein (.1) Lus10038639 [exp] 422 / 7e-145 AT1G08230 523 / 0.0 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10001908 [exp] 356 / 4e-120 AT5G41800 369 / 3e-125 Transmembrane amino acid transporter family protein (.1) Lus10009386 [exp] 322 / 1e-105 AT1G08230 453 / 4e-157 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10037913 [exp] 213 / 5e-64 AT1G08230 305 / 9e-100 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2) Lus10022329 [exp] 165 / 6e-46 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10041581 [exp] 165 / 8e-46 AT5G40780 798 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014606 [exp] 164 / 2e-45 AT5G40780 746 / 0.0 lysine histidine transporter 1 (.1.2) Lus10014605 [exp] 156 / 2e-42 AT5G40780 744 / 0.0 lysine histidine transporter 1 (.1.2) Lus10038640 [exp] 150 / 8e-41 AT1G08230 208 / 7e-63 L-GAMMA-AMINOBUTYRIC ACID TRANSPORTER 1, Transmembrane amino acid transporter family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF01490 [poplar] [flax] Aa_trans Transmembrane amino acid transporter protein
Representative CDS sequence Show only first row Show all	>Potri.001G093600.1 pacid=42787913 polypeptide=Potri.001G093600.1.p locus=Potri.001G093600 ID=Potri.001G093600.1.v4.1 annot-version=v4.1 ATGGCTCCACCTCCAAAATCTGATCCTTTCCTCGCTGACTCTCAACGTGAAGTTGATGCCGGTGCCGTCTTCGTCCTCGAATCCAAAGGGGAGTGGTGGC ATGCCGGGTTTCATTTGACGACGGCAATAGTGGGGCCTACAATACTGACGTTACCGTATGCGTTTAGAGGGCTAGGATGGGGTTTAGGGTTCTTCTGCTT AACGGTGATGGGAATGGTGACCTTTTACGCTTATTATCTCATGTCTAAGGTGCTAGACTACTGTGAAAGGGACGGTCGTCGGCATATCAGATTCCGGGAA TTAGCAGCCGACGTTTTAGGGTCCGGATGGATGTTTTATTTTGTCATAGTCATTCAAACAGCCATCAATACGGGAGTTGGTATAGGAGCAATATTGCTTG CAGGGGAATGCCTTCAGATCATGTACTCCAGTCTTTCTCCTGATGGACCCCTGAAGCTGTACGAGTTCATAGCAATGGTGACAGTGGTGATGATAGTTCT CTCTCAGTTTCCAACGTTCCACTCCCTCAGACATATCAATCTGGCTTCACTATTTCTCAGTTTGGGCTACAGTTTCATTGTTGTCGGTGCCTGTATTCAT GCGGGTCTGTCAAAAAATGCCCCTCCGAGGGACTATTCCTTAGAATCTTCAGAGTCAGCAAGGGTCTTCAGTGCATTCACTTCCATCTCCATAATAGCTG CAATCTTTGGGAATGGAATACTGCCTGAAATACAAGCTACTTTGGCTCCACCTGCTACTGGGAAGATGGTTAAAGGCCTTTTGATGTGTTATACTGTAAT ACTTGTTACTTTCTACTCAACTGCAATGTCTGGATACTGGGTGTTTGGTAACAAATCTAACTCAAACATTCTCAAAAGCCTAATGCCTGATGAGGAGCCT TCCTTGGCCCCAACATGGGTTCTTGGCATGGGTGTTGTCTTTGTTCTGCTTCAGCTCTTTGCTATTGGCCTCGTTTATTCTCAAGTAGCTTATGAGATCA TGGAAAAGAAATCTGCTGATGTCCAGCAAGGAATGTTCTCCAAAAGGAATCTAATTCCGAGGATAGTTCTTCGGACTCTTTATATGATATTCTGTGGATT TATGGCAGCTATGCTTCCTTTCTTTGGAGACATCAATGGTGTCGTAGGAGCTATTGGTTTCATCCCTCTAGATTTCGTACTTCCAATGCTCCTCTACAAC ATGACCTTCAAACCTCCGAAATCATCCCTCACCTACTGGCTCAATCTCTCCATAATGGTTGTCTTTACAGGTGCAGGACTCATGGGTGCATTCTCCTCAA CAAGGAAATTGGTCCTTGATGCCAAAAAGTTCAAGCTATTTAGCAGCAATGTGGTAGATTAA
AA sequence Show only first row Show all	>Potri.001G093600.1 pacid=42787913 polypeptide=Potri.001G093600.1.p locus=Potri.001G093600 ID=Potri.001G093600.1.v4.1 annot-version=v4.1 MAPPPKSDPFLADSQREVDAGAVFVLESKGEWWHAGFHLTTAIVGPTILTLPYAFRGLGWGLGFFCLTVMGMVTFYAYYLMSKVLDYCERDGRRHIRFRE LAADVLGSGWMFYFVIVIQTAINTGVGIGAILLAGECLQIMYSSLSPDGPLKLYEFIAMVTVVMIVLSQFPTFHSLRHINLASLFLSLGYSFIVVGACIH AGLSKNAPPRDYSLESSESARVFSAFTSISIIAAIFGNGILPEIQATLAPPATGKMVKGLLMCYTVILVTFYSTAMSGYWVFGNKSNSNILKSLMPDEEP SLAPTWVLGMGVVFVLLQLFAIGLVYSQVAYEIMEKKSADVQQGMFSKRNLIPRIVLRTLYMIFCGFMAAMLPFFGDINGVVGAIGFIPLDFVLPMLLYN MTFKPPKSSLTYWLNLSIMVVFTGAGLMGAFSSTRKLVLDAKKFKLFSSNVVD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G41800			Transmembrane amino acid trans...		Potri.001G093600 [exp]	0	1
AT5G60600		HDS, ISPG, CSB3...	CONSTITUTIVE SUBTILISIN 3, CHL...		Potri.004G210400 [exp]	4.00	0.8179
AT4G10150			RING/U-box superfamily protein...		Potri.013G095100 [exp]	9.27	0.7930
AT3G19720		DRP5B, ARC5	Dynamin related protein 5B, AC...		Potri.018G027001 [exp]	29.41	0.7836
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.003G184000 [exp]	68.75	0.7482	HSP70.8
AT5G35460			unknown protein		Potri.018G051100 [exp]	128.96	0.6730
AT1G54570			Esterase/lipase/thioesterase f...		Potri.005G046800 [exp]	131.38	0.7322
AT3G59360		UTR6, ATUTR6	UDP-galactose transporter 6 (....		Potri.008G077300 [exp]	137.88	0.6948
AT1G71910			unknown protein		Potri.013G114000 [exp]	213.99	0.6662
					Potri.007G042350 [exp]	214.70	0.6946

Compare expression of checked genes

Potri.001G093600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.