Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G63100 712 / 0 GRAS GRAS family transcription factor (.1) AT2G01570 239 / 2e-70 GRAS RGA1 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) AT3G54220 239 / 2e-69 GRAS SGR1, SCR SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) AT1G66350 231 / 4e-68 GRAS RGL1 RGA-like 1 (.1) AT1G14920 229 / 4e-67 GRAS RGA2, GAI RESTORATION ON GROWTH ON AMMONIA 2, GIBBERELLIC ACID INSENSITIVE, GRAS family transcription factor family protein (.1) AT1G50420 226 / 1e-66 GRAS SCL-3, SCL3 scarecrow-like 3 (.1) AT5G17490 218 / 3e-63 GRAS AtRGL3, RGL3 RGA-like protein 3 (.1) AT3G03450 219 / 4e-63 GRAS RGL2 RGA-like 2 (.1) AT5G41920 205 / 2e-59 GRAS GRAS family transcription factor (.1) AT5G48150 192 / 9e-54 GRAS PAT1 phytochrome a signal transduction 1, GRAS family transcription factor (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G122400 [exp] 1178 / 0 AT1G63100 696 / 0.0 GRAS family transcription factor (.1) Potri.001G326000 [exp] 282 / 2e-85 AT1G66350 296 / 2e-92 RGA-like 1 (.1) Potri.010G110700 [exp] 243 / 9e-72 AT2G01570 764 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.003G202100 [exp] 238 / 5e-71 AT1G50420 568 / 0.0 scarecrow-like 3 (.1) Potri.008G131700 [exp] 239 / 4e-70 AT2G01570 781 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.001G023500 [exp] 235 / 9e-70 AT1G50420 600 / 0.0 scarecrow-like 3 (.1) Potri.006G114200 [exp] 240 / 1e-68 AT3G54220 639 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Potri.017G125200 [exp] 233 / 1e-67 AT2G01570 701 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1) Potri.002G036100 [exp] 230 / 1e-67 AT3G54220 441 / 9e-149 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029592 [exp] 875 / 0 AT1G63100 669 / 0.0 GRAS family transcription factor (.1) Lus10006322 [exp] 737 / 0 AT1G63100 588 / 0.0 GRAS family transcription factor (.1) Lus10041540 [exp] 289 / 1e-87 AT1G66350 317 / 2e-100 RGA-like 1 (.1) Lus10012554 [exp] 290 / 3e-87 AT1G66350 318 / 1e-99 RGA-like 1 (.1) Lus10040734 [exp] 237 / 2e-68 AT5G41920 410 / 1e-137 GRAS family transcription factor (.1) Lus10016496 [exp] 237 / 2e-68 AT3G54220 663 / 0.0 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10022418 [exp] 229 / 3e-68 AT1G50420 592 / 0.0 scarecrow-like 3 (.1) Lus10003540 [exp] 231 / 1e-67 AT3G54220 423 / 1e-141 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10033912 [exp] 231 / 1e-67 AT3G54220 414 / 6e-138 SHOOT GRAVITROPISM 1, SCARECROW, GRAS family transcription factor (.1) Lus10017626 [exp] 231 / 5e-67 AT2G01570 679 / 0.0 REPRESSOR OF GA1-3 1, REPRESSOR OF GA, GRAS family transcription factor family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03514 [poplar] [flax] GRAS GRAS domain family
Representative CDS sequence Show only first row Show all	>Potri.001G109400.1 pacid=42793114 polypeptide=Potri.001G109400.1.p locus=Potri.001G109400 ID=Potri.001G109400.1.v4.1 annot-version=v4.1 ATGTTGGCCGGTTGTTCTAGTTCAACATTGCTGTCACCAAGGCATAGATTGAGGAGTGAATCACCTGCGCAGTTTCAAGCTTGCCATTTTCAGTTACCTT CAATGAGCACACAGAGATTGGACTTGCCGTGTACTTTCTCTCGCAAAGAATCATCGCGGTCGCAGCCCATTAGGCCTGTTGGTGTTGGCCTGTCAGTGGA TAAACCACTTGAGTCCAAGACCAGCAGTTGCTCTCTCAAGCAGAATATCAGGCTCCCCCCATTGGCAACAAGCAATCAATCAGTGAAAGATGAGTTTTGG GAGAAGGGTAAGAGCTTGAAGAGGTTTGCGGAGCAATCAGTTGATGAGTCTTGCATTAATAGGGCTAAGAGAAAAAGGGGTAACAATGATAATGTTAAAC CTGATGATTTTTGTGAAGGTGGTGATAGTTTGAGTTTAGGTCAGTTGGGGAGCGGCAATTTTTGGTTTCAACCAAGTTTGGAGGTGCCTAGAGGCCTTAA CCCTCAACAATTTCCTTTCTCCTTGACATGTTCAGGAGATGAGGAGAGGGTTTACTTTGTGCCTAGTGAAGTGATTTCCCCGCCTTTGCCATTGTCTAAC AATCCATGGGTGGGCTCTGTTATAACTGAGATCACTGACCTAGGTGAAAAGGATGGAGAGAGTAGCCAAAGGCCAGTAAAAGAAGCCTCGGGTTCAAGTA CTTCATCAGAGAGTCAAAGCTTAGGCCTCAGGCTAAGCGAGAATGTAGTGGAGCAGGAAGTGGGTAATGGCTCTAGGAATCCTCATCCTCAAGAAGGTGC TGCGATGGAGGCTGCAGAAACGGACCAGAGAGAGTTTCAGGGGTTTGAGCTAGTTAGCTTACTTACAGCTTGTGTTGAAGCAATTACGTTGAAGAATATC GCTGGGATCAACCATTTTCTAGCTGAATTGGGGGGGCTTGCTTCTCCGAAAGGAATTCCTATTAGCCGCCTTGCTGCTTATTATACTGAGGCCTTAGCTC TTAGAGTCACAAGGCTTTGGCCTCACATCTTTCATATAACTGCTCCTCGGGAACTTGATCGTGTTGACGATGATTCAGGGACTGCATTGAGGCTTCTGAA TCAGGTGAGCCCAATTCCAAAATTCATTCATTTCACTGCGAATGAGATGTTGTTGAGGGCTTTTGAAGGGAAAGATAGGGTTCATATTATAGACTTTGAC ATTAAGCAAGGGCTTCAATGGCCTACTTTGTTTCAGAGTTTGGCCTCCAGGACTAATCCTCCTAGCCATGTTAGAATCACTGGTATAGGCGAGTCTAAGC AAGAGCTTAATGAGACAGGAGATAGGCTTGCTGGATTTGCTGAGGCATTGAACCTGCCTTTCGAGTTCCATCCAGTTGTGGACAGGTTAGAAGATGTGAG GTTGTGGATGCTCCATGTGAAGGAGAGGGAGTGTGTGGCTATTAATTGTGTTTTCCAGATGCACAAGACACTATATGATGGGAGTGGAGGAGCACTGAGG GATTTCCTGGGACTTATCCGAAGCACAAACCCCGCAATAGTCATTGTGGCAGAGCAAGAAGCAGAACACAATGCCCCTAATTTGGAAACAAGAGTTTGCA ATTCGTTGAAGTACTACTCTGCCCTATTTGACTCGATTGATTCTAGCCTTCCCTTTGACAGCCCGGTTAGGATCAAAATAGAGGAGATGTATGCTCGAGA AATTAGGAACATTGTTGCTTGTGAAGGAAGTGACCGGCATGAAAGGCATGAAATGCTTGACAATTGGAAGAAGTTGATGGAGCAAGGAGGCCTCCGGTGC TTGGTAATCAGTGAGAGGGAAATGCTTCAGAGCCAAATTCTATTGAAGATGTACTCTTGTGATAGTTACCAAGTTAAGAAGCACGGGCAGGAGGGAGCGG CGCTTACTCTGAGTTGGTTAGATCAGCCTCTCTACACAGTCTCAGCGTGGACACCTTTAGACATTGCAGGGAGTTCATCCTCTTTTTCTCAGCCAAGTTG A
AA sequence Show only first row Show all	>Potri.001G109400.1 pacid=42793114 polypeptide=Potri.001G109400.1.p locus=Potri.001G109400 ID=Potri.001G109400.1.v4.1 annot-version=v4.1 MLAGCSSSTLLSPRHRLRSESPAQFQACHFQLPSMSTQRLDLPCTFSRKESSRSQPIRPVGVGLSVDKPLESKTSSCSLKQNIRLPPLATSNQSVKDEFW EKGKSLKRFAEQSVDESCINRAKRKRGNNDNVKPDDFCEGGDSLSLGQLGSGNFWFQPSLEVPRGLNPQQFPFSLTCSGDEERVYFVPSEVISPPLPLSN NPWVGSVITEITDLGEKDGESSQRPVKEASGSSTSSESQSLGLRLSENVVEQEVGNGSRNPHPQEGAAMEAAETDQREFQGFELVSLLTACVEAITLKNI AGINHFLAELGGLASPKGIPISRLAAYYTEALALRVTRLWPHIFHITAPRELDRVDDDSGTALRLLNQVSPIPKFIHFTANEMLLRAFEGKDRVHIIDFD IKQGLQWPTLFQSLASRTNPPSHVRITGIGESKQELNETGDRLAGFAEALNLPFEFHPVVDRLEDVRLWMLHVKERECVAINCVFQMHKTLYDGSGGALR DFLGLIRSTNPAIVIVAEQEAEHNAPNLETRVCNSLKYYSALFDSIDSSLPFDSPVRIKIEEMYAREIRNIVACEGSDRHERHEMLDNWKKLMEQGGLRC LVISEREMLQSQILLKMYSCDSYQVKKHGQEGAALTLSWLDQPLYTVSAWTPLDIAGSSSSFSQPS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G63100	GRAS		GRAS family transcription fact...		Potri.001G109400 [exp]	0	1
AT1G63100	GRAS		GRAS family transcription fact...		Potri.003G122400 [exp]	2.44	0.9588	GRAS19
AT5G18700		RUK, EMB3013	RUNKEL, EMBRYO DEFECTIVE 3013,...		Potri.008G195800 [exp]	3.74	0.9507
AT5G12930			unknown protein		Potri.003G207400 [exp]	4.58	0.9282
AT3G52110			unknown protein		Potri.001G267600 [exp]	4.89	0.9451
AT3G15550			unknown protein		Potri.003G058600 [exp]	7.74	0.9489
AT4G38070	bHLH		basic helix-loop-helix (bHLH) ...		Potri.011G131500 [exp]	9.21	0.9423
AT4G18570			Tetratricopeptide repeat (TPR)...		Potri.011G064500 [exp]	9.69	0.8866
AT2G25060		AtENODL14	early nodulin-like protein 14 ...		Potri.018G018200 [exp]	14.00	0.9409
AT3G58650			unknown protein		Potri.008G108600 [exp]	15.49	0.9136
AT5G03870			Glutaredoxin family protein (....		Potri.006G212700 [exp]	16.61	0.9422

Compare expression of checked genes

Potri.001G109400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.