Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G25470 164 / 4e-50 AP2_ERF DREB1C, FTQ4, CBF2, ATCBF2 FREEZING TOLERANCE QTL 4, DRE/CRT-BINDING PROTEIN 1C, C-repeat/DRE binding factor 2 (.1) AT1G12610 163 / 6e-50 AP2_ERF DDF1, DREB1F, FTL1 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) AT1G63030 161 / 1e-49 AP2_ERF DDF2�ADREB1E DWARF AND DELAYED FLOWERING 2, Integrase-type DNA-binding superfamily protein (.1.2) AT4G25480 162 / 2e-49 AP2_ERF CBF3, DREB1A, ATCBF3 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) AT5G51990 162 / 3e-49 AP2_ERF CBF4, DREB1D DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) AT4G25490 157 / 1e-47 AP2_ERF DREB1B, CBF1, ATCBF1 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) AT5G52020 122 / 1e-33 AP2_ERF Integrase-type DNA-binding superfamily protein (.1) AT2G36450 100 / 8e-26 AP2_ERF HRD HARDY, Integrase-type DNA-binding superfamily protein (.1) AT5G25810 96 / 8e-24 AP2_ERF TNY, TINY TINY, Integrase-type DNA-binding superfamily protein (.1) AT5G11590 95 / 3e-23 AP2_ERF DREB3, TINY2 TINY2, Integrase-type DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G110700 [exp] 230 / 7e-76 AT5G51990 201 / 8e-65 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.012G134100 [exp] 202 / 1e-64 AT5G51990 197 / 4e-63 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.015G136400 [exp] 199 / 2e-63 AT5G51990 189 / 2e-60 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Potri.004G187001 [exp] 146 / 2e-42 AT4G25490 124 / 1e-34 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Potri.009G147700 [exp] 144 / 7e-42 AT4G25480 108 / 3e-28 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Potri.003G121200 [exp] 115 / 5e-32 AT5G52020 149 / 2e-45 Integrase-type DNA-binding superfamily protein (.1) Potri.015G136300 [exp] 115 / 3e-31 AT5G52020 132 / 7e-38 Integrase-type DNA-binding superfamily protein (.1) Potri.001G110500 [exp] 111 / 2e-30 AT5G52020 152 / 1e-46 Integrase-type DNA-binding superfamily protein (.1) Potri.016G018600 [exp] 105 / 1e-27 AT2G36450 135 / 7e-40 HARDY, Integrase-type DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001871 [exp] 191 / 1e-60 AT1G12610 193 / 4e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006334 [exp] 191 / 2e-60 AT1G12610 193 / 3e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10006332 [exp] 183 / 1e-57 AT1G12610 194 / 1e-62 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10027412 [exp] 177 / 3e-55 AT5G51990 239 / 3e-80 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10029601 [exp] 177 / 5e-55 AT1G12610 191 / 3e-61 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1) Lus10031657 [exp] 173 / 2e-53 AT5G51990 235 / 2e-78 DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D, C-repeat-binding factor 4 (.1) Lus10027414 [exp] 171 / 3e-53 AT4G25490 208 / 1e-68 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10031654 [exp] 170 / 4e-53 AT4G25490 201 / 9e-66 DRE BINDING PROTEIN 1B, C-repeat/DRE binding factor 1 (.1) Lus10024491 [exp] 169 / 7e-52 AT4G25480 187 / 6e-60 C-REPEAT BINDING FACTOR 3, dehydration response element B1A (.1) Lus10029602 [exp] 161 / 8e-50 AT1G12610 181 / 2e-58 DWARF AND DELAYED FLOWERING 1, Integrase-type DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0081 [poplar] [flax] MBD-like PF00847 [poplar] [flax] AP2 AP2 domain
Representative CDS sequence Show only first row Show all	>Potri.001G110800.1 pacid=42792965 polypeptide=Potri.001G110800.1.p locus=Potri.001G110800 ID=Potri.001G110800.1.v4.1 annot-version=v4.1 ATGGATAATTTCTGCCAATTCTCTGATCAACATCCTTTGAGGTCAAATTCAATGCCCAATGACAGGCAAGAAGCATCTTCTTTCTCCGATAGCAGCACGT CTCGACGAGTTGTCCATTCTGATGAAGAGGTCTTACTAGCAACAAGTTTTCCGAAAAAACGCGCTGGCCGCAGAATATTCAGGGAGACTCGGCACCCGGT TTTTAGAGGTGTTCGGAAGAGGAATGGTAACAAATGGGTGTGTGAGATGCGGGAACCAAACAAGAAGTCACGAATATGGTTAGGAACATATCCTACACCA GAAATGGCAGCTCGAGCTCATGATGTTGCTGCTTTGGCACTTAGAGGCAAATCTGCTTGCCTTAACTTCGCTGATTCTGCCTGGAGGTTGCCTGTGCCAG TTTCGAAGGATTCTAAGGATATTACAAGGGCAGCAAATGAGGCAGCAGAATTATTTAGGCCTCAAGAGTTTGGTGGTCATCCGGCAAAACAACAAGATAG CAATGCAGTGCTAGAGGATTGCTCAAGTGAAGTTTGCAGCGATGATTGCAAAACTTTCCAAGAAAATGATGTCTTCTTCAAGGAAGCAGTGTTTGCCATG CCAGGAGAAAATGATGTCTTCTTCGAGGAAGCAGTGTTTGACATGCCAGGGTTGCTCGTGGACATGGCAGAAGGTCTTCTACTCTCTCCTCCACGTTATG TAAGGAATGATTGCAACGACTTGGATCATATGGAGAATGGTTCTGATTTGTCGTTATGGAGTTATTAG
AA sequence Show only first row Show all	>Potri.001G110800.1 pacid=42792965 polypeptide=Potri.001G110800.1.p locus=Potri.001G110800 ID=Potri.001G110800.1.v4.1 annot-version=v4.1 MDNFCQFSDQHPLRSNSMPNDRQEASSFSDSSTSRRVVHSDEEVLLATSFPKKRAGRRIFRETRHPVFRGVRKRNGNKWVCEMREPNKKSRIWLGTYPTP EMAARAHDVAALALRGKSACLNFADSAWRLPVPVSKDSKDITRAANEAAELFRPQEFGGHPAKQQDSNAVLEDCSSEVCSDDCKTFQENDVFFKEAVFAM PGENDVFFEEAVFDMPGLLVDMAEGLLLSPPRYVRNDCNDLDHMENGSDLSLWSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G25470	AP2_ERF	DREB1C, FTQ4, C...	FREEZING TOLERANCE QTL 4, DRE/...		Potri.001G110800 [exp]	0	1
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Potri.004G141200 [exp]	1.41	0.9657
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.018G095200 [exp]	3.46	0.9540	EXT.7
AT5G54490		PBP1	pinoid-binding protein 1 (.1)		Potri.019G120600 [exp]	3.46	0.9636
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.018G095100 [exp]	3.74	0.9526	EXT.8
AT4G34410	AP2_ERF	RRTF1 (Redox Re...	redox responsive transcription...		Potri.009G101900 [exp]	9.38	0.9380
AT4G37260	MYB	ATMYB73	myb domain protein 73 (.1)		Potri.002G128900 [exp]	14.59	0.9600
AT5G59820	C2H2ZnF	ZAT12, RHL41	RESPONSIVE TO HIGH LIGHT 41, C...		Potri.009G027700 [exp]	15.36	0.9330	RHL41.1
					Potri.016G004500 [exp]	17.43	0.9275
AT1G11050			Protein kinase superfamily pro...		Potri.005G181800 [exp]	21.56	0.9555
AT5G52020	AP2_ERF		Integrase-type DNA-binding sup...		Potri.012G134000 [exp]	26.38	0.9108

Compare expression of checked genes

Potri.001G110800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.