Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SKU5.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12420 931 / 0 SKU5 Cupredoxin superfamily protein (.1.2) AT4G25240 787 / 0 SKS1 SKU5 similar 1 (.1) AT5G51480 782 / 0 SKS2 SKU5 similar 2 (.1) AT5G48450 691 / 0 SKS3 SKU5 similar 3 (.1) AT4G22010 504 / 8e-174 SKS4 SKU5 similar 4 (.1) AT1G21850 498 / 2e-171 SKS8 SKU5 similar 8 (.1) AT1G21860 497 / 2e-171 SKS7 SKU5 similar 7 (.1) AT1G76160 496 / 1e-170 SKS5 SKU5 similar 5 (.1) AT1G55570 492 / 4e-169 SKS12 SKU5 similar 12 (.1) AT1G41830 488 / 2e-167 SKS6 SKU5 SIMILAR 6, SKU5-similar 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G112700 [exp] 1091 / 0 AT4G12420 932 / 0.0 Cupredoxin superfamily protein (.1.2) Potri.015G127200 [exp] 842 / 0 AT4G25240 882 / 0.0 SKU5 similar 1 (.1) Potri.012G126400 [exp] 833 / 0 AT4G25240 883 / 0.0 SKU5 similar 1 (.1) Potri.014G177700 [exp] 759 / 0 AT5G48450 885 / 0.0 SKU5 similar 3 (.1) Potri.005G247700 [exp] 519 / 8e-180 AT1G76160 878 / 0.0 SKU5 similar 5 (.1) Potri.002G021000 [exp] 519 / 1e-179 AT1G75790 670 / 0.0 SKU5 similar 18 (.1) Potri.002G227600 [exp] 518 / 1e-179 AT1G76160 794 / 0.0 SKU5 similar 5 (.1) Potri.004G180500 [exp] 514 / 5e-178 AT1G76160 880 / 0.0 SKU5 similar 5 (.1) Potri.002G013700 [exp] 514 / 9e-178 AT1G76160 902 / 0.0 SKU5 similar 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028921 [exp] 994 / 0 AT4G12420 975 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10004339 [exp] 993 / 0 AT4G12420 979 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10032241 [exp] 986 / 0 AT4G12420 950 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10024604 [exp] 966 / 0 AT4G12420 941 / 0.0 Cupredoxin superfamily protein (.1.2) Lus10031143 [exp] 787 / 0 AT4G25240 898 / 0.0 SKU5 similar 1 (.1) Lus10031722 [exp] 787 / 0 AT4G25240 897 / 0.0 SKU5 similar 1 (.1) Lus10038920 [exp] 779 / 0 AT5G51480 851 / 0.0 SKU5 similar 2 (.1) Lus10027207 [exp] 774 / 0 AT5G51480 840 / 0.0 SKU5 similar 2 (.1) Lus10025860 [exp] 746 / 0 AT5G48450 882 / 0.0 SKU5 similar 3 (.1) Lus10038239 [exp] 741 / 0 AT5G48450 858 / 0.0 SKU5 similar 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0026 [poplar] [flax] CU_oxidase PF00394 [poplar] [flax] Cu-oxidase Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07731 [poplar] [flax] Cu-oxidase_2 Multicopper oxidase CL0026 [poplar] [flax] CU_oxidase PF07732 [poplar] [flax] Cu-oxidase_3 Multicopper oxidase
Representative CDS sequence Show only first row Show all	>Potri.001G120300.1 pacid=42788872 polypeptide=Potri.001G120300.1.p locus=Potri.001G120300 ID=Potri.001G120300.1.v4.1 annot-version=v4.1 ATGGCTTTGCGTAGCAAGTTTTTAGCTTTGTTTCTTATCCACATTTGCTTGCTTTTGAGCTTGTGTTTAGCTGCAGATCCTTTTGTTAGTTATGACTTTG AAGTCTCCTACATCACTGCTTCTCCTCTTGGTGTGCCTCAACAGGTTATTGCTATAAATGGAAAGTTTCCTGGTCCTACTATCAATGTGACCACTAACAA CAATGTTGCTATCAATATCAAGAACAAATTGGATGAGAATCTCCTTATGCATTGGTCTGGAATTCAACAAAGGAGAAGTTCATGGCAAGATGGGGTTCTT GGTACTAACTGTCCAATTCCCCCAAAGTGGAACTGGACTTACCAGTTTCAGGTTAAAGATCAGATAGGGAGTTTCTTTTACTTCCCTACTCTCCATATGC AGAGAGCTTCTGGTGGATTTGGCAGCTTTGTTATAAACAACCGGGCTATTATTCCAATTCCTTTTGATACTCCACATGGGGACATTGTCATTTTGATTGG TGATTGGTACAAAAGGAACCACACGGCTTTGAGGAAGGCTCTTGATGCTGGGAAAGATCTAGGGATGCCAGATGGGGTTCTTATTAATGGCAAAGGCCCT TACCAATATAACACAACACTTGTCCCTGATGGCATTGACTATGAAACCATTGAAGTTCAACCAGGGAAAACCTATCGCATCCGTGTGCACAATGTTGGAA CTTCAACTAGTTTGAATTTCAGGATCCAGAACCACAATCTGCTTTTAGCTGAGTCAGAGGGATCATATACAGTGCAACAAAATTATACTAGCTTAGATAT ACATGTAGGGCAATCTTATTCTTTTTTGGTGACAATGGATCAGAACGCAAGTACTGATTACTACATTGTAGCTAGTGCAAGGTTTGTGAATGAATCGCAG TGGAAAAGGGTTACTGGTGTTGCAATCTTGCATTACACAAATTCCAAGGGGAAGGCAAAGGGTCCCCTTCCAGAGGCACCTAATGATGAGTTTGACAAAA CCTTCTCAATGAACCAAGCAAGATCCATCAGATGGAATGTTTCTGCAAGTGGTGCACGTCCCAACCCTCAAGGCTCATTCAGATATGGCTCAATCAATGT GACCGATGTTTACGTGTTGAAAAATAAGCCTCTGGTAACAATTAACGGGAAAAGACGAGCAACTCTCAGTGGGATATCATTTGTCAATCCTACTACTCCA ATCAGGCTTGCAGACCAGTTCAAAGTGAAGGGTGCGTATAAGCTTGATTTCCCTGAGACGCCCCTTACAGGACCACCTAAAATGGCAACATCAGTGATCA ATGGAACATACAGGGGATTTATGGAAGTCATTCTGCAGAACAATGACACCAAGATGCATAGCTATCACCTAAGTGGATATGCGGTTTTTGTTGTGGGGAT GGATTATGGTGAATGGACAGAGAACAGCAGGGGCACATATAATAAGTGGGATGGCATTGCACGCTCCACAGTCCAGGCTTATCCTGGAGCTTGGACGGCA ATTTTGGTTTCACTTGACAATGTTGGAGTCTGGAACCTCAGAACAGAAAACCTTGACTCCTGGTATCTTGGCCAGGAAACGTATATCAGAATTGTCAATC CAGAGGAGACTAACAAAACCGAGTTGCCCATTCCAGACAACGCCCTCTTTTGCGGTGAACTTAGCAAATTGCAGAAGCCAGAAGATATTTCTTTTGCAGC ATCAATCACAGGTAACAGATCAAAGCTATTGTTCATGCTGCTGATGGCTGTCTGTGCTTTGATGTCCGTTTTTGGTTGA
AA sequence Show only first row Show all	>Potri.001G120300.1 pacid=42788872 polypeptide=Potri.001G120300.1.p locus=Potri.001G120300 ID=Potri.001G120300.1.v4.1 annot-version=v4.1 MALRSKFLALFLIHICLLLSLCLAADPFVSYDFEVSYITASPLGVPQQVIAINGKFPGPTINVTTNNNVAINIKNKLDENLLMHWSGIQQRRSSWQDGVL GTNCPIPPKWNWTYQFQVKDQIGSFFYFPTLHMQRASGGFGSFVINNRAIIPIPFDTPHGDIVILIGDWYKRNHTALRKALDAGKDLGMPDGVLINGKGP YQYNTTLVPDGIDYETIEVQPGKTYRIRVHNVGTSTSLNFRIQNHNLLLAESEGSYTVQQNYTSLDIHVGQSYSFLVTMDQNASTDYYIVASARFVNESQ WKRVTGVAILHYTNSKGKAKGPLPEAPNDEFDKTFSMNQARSIRWNVSASGARPNPQGSFRYGSINVTDVYVLKNKPLVTINGKRRATLSGISFVNPTTP IRLADQFKVKGAYKLDFPETPLTGPPKMATSVINGTYRGFMEVILQNNDTKMHSYHLSGYAVFVVGMDYGEWTENSRGTYNKWDGIARSTVQAYPGAWTA ILVSLDNVGVWNLRTENLDSWYLGQETYIRIVNPEETNKTELPIPDNALFCGELSKLQKPEDISFAASITGNRSKLLFMLLMAVCALMSVFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.001G120300 [exp]	0	1	SKU5.2
AT3G06840			unknown protein		Potri.001G162100 [exp]	1.00	0.9578
AT1G04040			HAD superfamily, subfamily III...		Potri.002G257700 [exp]	2.44	0.9560
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.012G105500 [exp]	2.64	0.9354
AT5G11300		CYC2BAT, CYCA2;...	CYCLIN A2;2, mitotic-like cycl...		Potri.018G034100 [exp]	3.16	0.9275	Pt-CYC3.1
AT4G22250			RING/U-box superfamily protein...		Potri.014G158900 [exp]	4.47	0.9421
AT5G66920		SKS17	SKU5 similar 17 (.1)		Potri.007G038300 [exp]	4.58	0.9444
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.017G088600 [exp]	6.70	0.9278
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.003G112700 [exp]	6.92	0.9444	Pt-SKU5.1
AT1G07220			Arabidopsis thaliana protein o...		Potri.001G252000 [exp]	6.92	0.9244
AT4G02010			Protein kinase superfamily pro...		Potri.002G194700 [exp]	7.21	0.9225

Compare expression of checked genes

Potri.001G120300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.