Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-KUP10.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G35060 1047 / 0 KUP11 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) AT1G31120 1038 / 0 KUP10 K+ uptake permease 10, K+ uptake permease 10 (.1) AT4G19960 914 / 0 KT9, HAK9, ATKUP9 K+ uptake permease 9, K+ uptake permease 9 (.1), K+ uptake permease 9 (.2) AT1G60160 619 / 0 Potassium transporter family protein (.1) AT3G02050 613 / 0 ATKT4, ATKUP3, KUP3 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) AT2G40540 610 / 0 ATKUP2, ATKT2, TRK2, SHY3, KT2 potassium transporter 2 (.1.2) AT5G14880 598 / 0 Potassium transporter family protein (.1) AT4G13420 593 / 0 HAK5, ATHAK5 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1) AT1G70300 587 / 0 KUP6 K+ uptake permease 6, K+ uptake permease 6 (.1) AT4G33530 577 / 0 KUP5 K+ uptake permease 5, K+ uptake permease 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G123800 [exp] 1156 / 0 AT2G35060 1149 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109700 [exp] 1142 / 0 AT2G35060 1155 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.003G109800 [exp] 1075 / 0 AT2G35060 985 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Potri.014G144900 [exp] 674 / 0 AT3G02050 1175 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.002G237500 [exp] 660 / 0 AT3G02050 1179 / 0.0 K+ uptake transporter 3, ARABIDOPSIS THALIANA POTASSIUM TRANSPORTER 4, K+ uptake transporter 3 (.1) Potri.010G094400 [exp] 623 / 0 AT1G60160 1209 / 0.0 Potassium transporter family protein (.1) Potri.010G094300 [exp] 607 / 0 AT1G70300 1228 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.008G147400 [exp] 605 / 0 AT1G70300 1221 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Potri.001G069650 [exp] 603 / 0 AT4G13420 951 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018324 [exp] 1060 / 0 AT2G35060 1212 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10038361 [exp] 1052 / 0 AT2G35060 1164 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10036221 [exp] 1029 / 0 AT2G35060 1173 / 0.0 K+ uptake permease 11, K+ uptake permease 11 (.1), K+ uptake permease 11 (.2) Lus10030857 [exp] 615 / 0 AT1G70300 1249 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10012993 [exp] 612 / 0 AT1G60160 1237 / 0.0 Potassium transporter family protein (.1) Lus10030632 [exp] 608 / 0 AT1G70300 1238 / 0.0 K+ uptake permease 6, K+ uptake permease 6 (.1) Lus10030539 [exp] 596 / 0 AT2G40540 1245 / 0.0 potassium transporter 2 (.1.2) Lus10003402 [exp] 587 / 0 AT5G09400 1296 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10036160 [exp] 577 / 0 AT5G09400 1204 / 0.0 K+ uptake permease 7, K+ uptake permease 7 (.1) Lus10013304 [exp] 571 / 0 AT4G13420 950 / 0.0 high affinity K+ transporter 5, ARABIDOPSIS THALIANA HIGH AFFINITY K+ TRANSPORTER 5, high affinity K+ transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0062 [poplar] [flax] APC PF02705 [poplar] [flax] K_trans K+ potassium transporter
Representative CDS sequence Show only first row Show all	>Potri.001G123700.1 pacid=42792963 polypeptide=Potri.001G123700.1.p locus=Potri.001G123700 ID=Potri.001G123700.1.v4.1 annot-version=v4.1 ATGGCTACTGGAGGAAAGAGTAATGAAGAAATTGATTATGAAAGTAGAATCTGGGTTTTGGATCAGAATCTTGATCAACCCATGGACGCAGAAGCTGAGA AGCTTAGGAACAAGTATCAGGATAAGAAATTCTCTCGATTACTGCTTATGCAGCTTGCTTTCCAAAGCCTTGGAGTGGTCTATGGAGATTTAGGCACGTC TCCTCTGTATGTCTTCTACAATACATTTCCAGATGGAATTGAAGATCCAGAGGATTTAATTGGAGCTCTATCGTTGATCATATATTCCCTTACTCTTATC CCGCTCCTGAAGTATGTTTTAATTGTTTGTAGAGCAAATGACAATGGCCAAGGTGGGACATTTGCTCTTTATTCGCTACTATGTCGACATGCAAAAGTGA AGACTATCCCTAATCAAGATCATACAGATGAGCAGCTAACTACTTATAGTCGTTCTACTTTCCATGAGAAATCTTTTGCTGGAAAGACCAAGAGATGGTT GGAGGAACATCCCTTCAGGAAGAATGCGCTTCTTGTTCTTGTTCTTGTTGGCTCTTCCATGGTAATTGGTGATGGGATTCTTACACCAGCTATATCAGTG CTGTCCGCTGTTCAAGGAATCAAGTTAGACCACCCCAAGATGAGTAGTGATGTAGTCGTGCTTGTTGCTGTTGTCATATTAGTAGGCTTGTTCAGCATGC AGCACCATGGTGTGGATAGGGTTAGTTGGCTCTTTGCACCAATTGTGCTCCTTTGGTTTCTCTTGATTGGAGGAATTGGCTTATTCAACATTTGGAAATA TGATACGGGTGTTCTGAAAGCCATTTCACCGGTGTACATATATCGTTATTTCAGAAGGGGAGGGAGAGACAGTTGGCTGTCCCTCGGAGGTATCATGCTT AGCATAACAGGAACCGAGGCCCTGTTTGCCGACCTATCTCATTTTCCTGTACCGTCTATACAGATTGCTTTCACAACAGTTGTTTTTCCCTGCCTACTTT TGGCCTATTCTGGACAAGCTGCCTACCTCATGAAGAACACAAATCATGTAGTTGATGCATTTTACAGCTCTATTCCAGATAGCATTTATTGGCCAGTACT TCTAGTTGCAACTGCAGCTGCTGTTGTTGCAAGCCAAGCCACCATATGTGCAACTTTTTCATTAATCAAGCAGGCCCTTGCACTTGGTTGTTTTCCAAGA GTTAAAATTATACATACATCAAAAAGGTTTCTAAACCACATATATATTCCAGACATTAATTGGATCCTTATGATTCTCTGTGTTAGTGTGACAGCTGGTT TTAAGAATCAAAGCCAAATTGGAAATGCTTCTGGGACTGCAGTCGTCATAGTCATGCTGGTGACCACATTGCTTATGATTCTAGTCATGCTATTAATATG GCGCTGCCATTGGATTCTTGTCCTGATATTCACGGGTTTATCACTGGTAGTGGAGGGTACTTACTTTTCTTCTGTGCTCTGCAAGGTCAATCAAGGTGGT TGGGTTCCTCTTGTGATCGCCTTAGCATTTTTTATCATCATGTATGTGTGGCATTATGGTACCAAGAAACGTTACGAGTTTGAGGTGCACAGTAAGGTTT CAATGGCATGGATTCTGGGGCTTGGTCCCAGTTTAGGACTAGTTCGTGTCCCTGGAATCGGACTTGTATACACTGAACTAGCAAGAGGAGTACCACACAT TTTTTCCCATTTCATCACAAACCTACCTGCCATCCATTCAATAGTTGTTTTTGTCTGTGTGAAGTTCCTTCCTGTCCACACAGTTCCTGAAGGAGAGAGA TTCCTTGTAAAGCGAATAGGACCCATTAATTTCCGTATGTTCCGTTGTGTTGTAAGATATGGGTATAAAGACCTCCATAAAAGAGATGAAAGTTTTGAGA AAAAACTCTTCGAAGGTCTTTACACATTTGTCCGGCTTGAGTCCATGATGGACGGGTGTTCAGACTCAGATGACTACAGTATATGTGACCAGGAAACTGA GCAGCCGAATGATGTTCCTCTGAATCACTCTAGCAACACAATGCCATTGAACATGGATGGAACGATTTCATCAGGAGATTCAATCGTGTCTCTTAATGGC CATATGCATAATAACACTGCCGTCGCATCATCTGGTCTTCTAAGCAACCCAGCTGAGGTAAATGAGTTAGAATTTTTGGGTGTCTGTAGAGATGCCGGTG TTGTGCACATACTGGGGAATACAGAGATTCTGGCACGCAGGGATTCGAAGTTCTATAAGAAAATAGCAATCGATCATATATATGCTTTTCTTAGGAAGAT ATGCAGACAGAACAGTGCAGCTCTCAATGTTCCTCATGAAAGTCTCTTAAATGTAGGACAAATCATTCATGTATAG
AA sequence Show only first row Show all	>Potri.001G123700.1 pacid=42792963 polypeptide=Potri.001G123700.1.p locus=Potri.001G123700 ID=Potri.001G123700.1.v4.1 annot-version=v4.1 MATGGKSNEEIDYESRIWVLDQNLDQPMDAEAEKLRNKYQDKKFSRLLLMQLAFQSLGVVYGDLGTSPLYVFYNTFPDGIEDPEDLIGALSLIIYSLTLI PLLKYVLIVCRANDNGQGGTFALYSLLCRHAKVKTIPNQDHTDEQLTTYSRSTFHEKSFAGKTKRWLEEHPFRKNALLVLVLVGSSMVIGDGILTPAISV LSAVQGIKLDHPKMSSDVVVLVAVVILVGLFSMQHHGVDRVSWLFAPIVLLWFLLIGGIGLFNIWKYDTGVLKAISPVYIYRYFRRGGRDSWLSLGGIML SITGTEALFADLSHFPVPSIQIAFTTVVFPCLLLAYSGQAAYLMKNTNHVVDAFYSSIPDSIYWPVLLVATAAAVVASQATICATFSLIKQALALGCFPR VKIIHTSKRFLNHIYIPDINWILMILCVSVTAGFKNQSQIGNASGTAVVIVMLVTTLLMILVMLLIWRCHWILVLIFTGLSLVVEGTYFSSVLCKVNQGG WVPLVIALAFFIIMYVWHYGTKKRYEFEVHSKVSMAWILGLGPSLGLVRVPGIGLVYTELARGVPHIFSHFITNLPAIHSIVVFVCVKFLPVHTVPEGER FLVKRIGPINFRMFRCVVRYGYKDLHKRDESFEKKLFEGLYTFVRLESMMDGCSDSDDYSICDQETEQPNDVPLNHSSNTMPLNMDGTISSGDSIVSLNG HMHNNTAVASSGLLSNPAEVNELEFLGVCRDAGVVHILGNTEILARRDSKFYKKIAIDHIYAFLRKICRQNSAALNVPHESLLNVGQIIHV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Potri.001G123700 [exp]	0	1	Pt-KUP10.1
AT1G61900			unknown protein		Potri.004G016000 [exp]	2.64	0.8947
AT3G53540			unknown protein		Potri.016G080200 [exp]	3.00	0.9021
AT1G13250		GATL3	galacturonosyltransferase-like...		Potri.008G116900 [exp]	3.00	0.8889
AT3G52120			SWAP (Suppressor-of-White-APri...		Potri.009G064600 [exp]	3.46	0.9039
					Potri.007G010000 [exp]	5.00	0.9077
AT4G39460		SAMC1, SAMT1	SAM TRANSPORTER1, S-adenosylme...		Potri.005G197200 [exp]	5.47	0.9005
AT4G16710			glycosyltransferase family pro...		Potri.013G025600 [exp]	5.47	0.8970
AT3G12020			P-loop containing nucleoside t...		Potri.016G060400 [exp]	6.08	0.8656
AT1G35510			O-fucosyltransferase family pr...		Potri.019G080900 [exp]	6.32	0.8788
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187401 [exp]	7.48	0.8715

Compare expression of checked genes

Potri.001G123700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.