Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-CDC48.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G03670 766 / 0 CDC48B cell division cycle 48B (.1) AT3G53230 369 / 2e-117 ATPase, AAA-type, CDC48 protein (.1) AT5G03340 362 / 8e-115 ATPase, AAA-type, CDC48 protein (.1) AT3G09840 348 / 2e-109 ATCDC48, CDC48A, CDC48 cell division cycle 48 (.1) AT3G01610 291 / 6e-88 CDC48C, EMB1354 embryo defective 1354, cell division cycle 48C (.1) AT3G56690 243 / 4e-69 CIP111 Cam interacting protein 111 (.1) AT5G08470 205 / 5e-56 EMB2817, PEX1 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) AT5G19990 177 / 3e-49 ATSUG1, RPT6A regulatory particle triple-A ATPase 6A (.1) AT1G03000 184 / 4e-49 PEX6 peroxin 6 (.1) AT5G20000 177 / 4e-49 RPT6A AAA-type ATPase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G091600 [exp] 372 / 6e-119 AT3G53230 1484 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.006G125500 [exp] 368 / 3e-117 AT5G03340 1496 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.012G088200 [exp] 363 / 2e-115 AT5G03340 1459 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.015G080600 [exp] 363 / 4e-115 AT5G03340 1455 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.017G108200 [exp] 362 / 4e-115 AT5G03340 1311 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Potri.013G151600 [exp] 277 / 7e-83 AT3G01610 747 / 0.0 embryo defective 1354, cell division cycle 48C (.1) Potri.006G035000 [exp] 235 / 2e-66 AT3G56690 1080 / 0.0 Cam interacting protein 111 (.1) Potri.001G174100 [exp] 226 / 6e-63 AT5G08470 1259 / 0.0 EMBRYO DEFECTIVE 2817, peroxisome 1 (.1) Potri.010G098300 [exp] 174 / 5e-48 AT5G19990 768 / 0.0 regulatory particle triple-A ATPase 6A (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018033 [exp] 810 / 0 AT2G03670 813 / 0.0 cell division cycle 48B (.1) Lus10042029 [exp] 793 / 0 AT2G03670 826 / 0.0 cell division cycle 48B (.1) Lus10021441 [exp] 369 / 2e-117 AT5G03340 1529 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10037385 [exp] 359 / 1e-113 AT5G03340 1501 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10021442 [exp] 358 / 3e-113 AT5G03340 1520 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016123 [exp] 357 / 4e-113 AT5G03340 1526 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10016124 [exp] 354 / 5e-112 AT5G03340 1511 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10023018 [exp] 311 / 5e-96 AT5G03340 1419 / 0.0 ATPase, AAA-type, CDC48 protein (.1) Lus10020255 [exp] 315 / 5e-95 AT3G56690 1066 / 0.0 Cam interacting protein 111 (.1) Lus10001402 [exp] 294 / 8e-92 AT3G53230 803 / 0.0 ATPase, AAA-type, CDC48 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00004 [poplar] [flax] AAA ATPase family associated with various cellular activities (AAA) CL0023 [poplar] [flax] P-loop_NTPase PF07728 [poplar] [flax] AAA_5 AAA domain (dynein-related subfamily)
Representative CDS sequence Show only first row Show all	>Potri.001G128700.1 pacid=42793262 polypeptide=Potri.001G128700.1.p locus=Potri.001G128700 ID=Potri.001G128700.1.v4.1 annot-version=v4.1 ATGGAACCTCCCAGCAGCAGCAGCGGCTTCGGCGGCGGCAGCAGCGGCTTCGGCGGCGGCGGCAGCAGCAAAGTCAACAACGGAACTGAAAACTCAAACA ACGAGTGGAAAGCCGAAGAAGCAATTGGTGGAAATAAAGCGGCTCTCGAAGCTTTAAGAGAGCTCATTACTTTCCCTCTTCTCTACTCGCGTGAAGCTCA GAAACTCGGTCTAAAATGGCCAACAGGTTTGCTTCTGTACGGTCCACCAGGAACCGGAAAGACAAGTTTGGTACGAGCAGTTGTACGCGAATGCGGGGCG CATTTAATTGTCATTAGTCCACATTTCGTTCATAGAGCGCATGCTGGAGAAAGCGAGAGAGTTCTACGTGAGGCTTTTTCAGATGCATTGTCTCATGCTG TGGCAGGCAAGCCATCAGTTATTTTTATTGATGAAATTGATGCCTTGTGTCATCGTCGTGATTCAAGACGGGAGCAAGATGTTCGTGTAGCCTCTCAACT ATTTGCTTTGATGGATGCCAACAAGCCCTCATCTACATCTTCAGCACAAGTTGTTGTGATTGCATCAACTAATAGAGTGGATGCAATTGACCCTGCATTA AGAAGATCTGGTCGTTTTGATGCTGAAATAGAAGTTACTACACCTACAGAAGAGGAGCGATTGCAAATTCTCAAGCTCTATACAAGGAAGCTTCATTTGG ATCCTAATGTTAACTTACATGCTATAGCTGCATCTTGTAACGGATATGTTGGGGCTGATTTGGAAGCTTTATGTCGCGAAGCTACCATGTCCGCTCTTAA TTCTTTAGATACAAGTGAAGATGCTGGTGTGCAATTAACGATGGATGACTGGAAGCATGCTAAATCTGTGGTTGGCCCTAGCATAACAAGAGGTGTGACA ATGGAAATCCCCAAAGTGTCTTGGGAAGATATTGGTGGACTGAAGGATTTAAAAAAAAAGCTCCAACAAGCTGTTGAATGGCCTATCAAACATTCTGCTG CATTTGCAAGGATGGGGATATCACCAATTCGTGGAGTTCTTCTGCATGGACCTCCAGGATGCTCAAAAACCACTCTTGCTAAAGCTGCAGCTAATGCTGC TCAAGCTTCCTTTTTTTCCTTGAGTGGTGCAGAACTCTATTCAATGTACGTTGGAGAGGGGGAAGCATTGCTGCGCCATACATTTCAGAGAGCTCGCCTT GCAGCACCAAGCATAATATTCTTTGACGAGGCTGATGTTGTTGCTGCAAAAAGAGGTGGGACATCAAGTAACAGCACTACCGTAGGAGAGAGGCTTCTGT CAACGTTACTGACTGAAATGGATGGTTTAGAGCAGTCTAAAGGAATTCTTGTGCTGGCTGCCACAAATCGTCCTTATGCAATTGATGCTGCACTTATGCG CCCTGGACGCTTTGATTTGGTGCTGTATGTGCCACCACCTGATTTAGAGGCTCGATATGAGATACTTGGTGTTCACACACGTAAAATGAAAATAAGTAAT GATGTTGACCTGAGAAGAATAGCAGAAGATTCTGAGCTCTTCACTGGGGCTGAGCTGGAGGGCCTTTGTCGGGAAGCTGGTATTGTAGCTCTGAGGGAAA ACATATCTGCCACTGTCGTATGCAATCGTCATTTCCAGAGAGTGAAGGAGTCGTTAAAACCAGCTTTAACAAGAGCTGAAGTTGAAAGATATTCATCATT TATGAAGACTAAACAAAAGAGATCTGGCGCAATTGAATTTGATCCTAAACCCAATACTGAGTGCAAAAGGAATTTGTTGGATTCAATGCTTCCAGTCAAA GCTGGTGTTCTTAGCTTAGTATTACTTGCTGCTTCTAAATATTTTCTTATGTTTACCAAGTCAGCCAGACCTGATGTACCAGCAACCTGA
AA sequence Show only first row Show all	>Potri.001G128700.1 pacid=42793262 polypeptide=Potri.001G128700.1.p locus=Potri.001G128700 ID=Potri.001G128700.1.v4.1 annot-version=v4.1 MEPPSSSSGFGGGSSGFGGGGSSKVNNGTENSNNEWKAEEAIGGNKAALEALRELITFPLLYSREAQKLGLKWPTGLLLYGPPGTGKTSLVRAVVRECGA HLIVISPHFVHRAHAGESERVLREAFSDALSHAVAGKPSVIFIDEIDALCHRRDSRREQDVRVASQLFALMDANKPSSTSSAQVVVIASTNRVDAIDPAL RRSGRFDAEIEVTTPTEEERLQILKLYTRKLHLDPNVNLHAIAASCNGYVGADLEALCREATMSALNSLDTSEDAGVQLTMDDWKHAKSVVGPSITRGVT MEIPKVSWEDIGGLKDLKKKLQQAVEWPIKHSAAFARMGISPIRGVLLHGPPGCSKTTLAKAAANAAQASFFSLSGAELYSMYVGEGEALLRHTFQRARL AAPSIIFFDEADVVAAKRGGTSSNSTTVGERLLSTLLTEMDGLEQSKGILVLAATNRPYAIDAALMRPGRFDLVLYVPPPDLEARYEILGVHTRKMKISN DVDLRRIAEDSELFTGAELEGLCREAGIVALRENISATVVCNRHFQRVKESLKPALTRAEVERYSSFMKTKQKRSGAIEFDPKPNTECKRNLLDSMLPVK AGVLSLVLLAASKYFLMFTKSARPDVPAT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G03670		CDC48B	cell division cycle 48B (.1)		Potri.001G128700 [exp]	0	1	Pt-CDC48.1
AT1G80380			P-loop containing nucleoside t...		Potri.001G177300 [exp]	5.00	0.8325
AT5G46680			Pentatricopeptide repeat (PPR-...		Potri.006G006500 [exp]	10.48	0.8090
AT5G09380			RNA polymerase III RPC4 (.1)		Potri.006G143500 [exp]	14.69	0.8148
AT2G31320		ATPARP2	poly(ADP-ribose) polymerase 2 ...		Potri.002G041300 [exp]	18.76	0.8091
AT4G27220			NB-ARC domain-containing disea...		Potri.001G446332 [exp]	20.49	0.8217
AT5G01510		RUS5	ROOT UV-B SENSITIVE 5, Protein...		Potri.006G099700 [exp]	22.73	0.8043
AT5G17230		PSY	PHYTOENE SYNTHASE (.1.2.3)		Potri.004G081466 [exp]	23.02	0.8050
					Potri.007G114901 [exp]	24.97	0.8061
					Potri.002G100700 [exp]	26.66	0.7166
AT4G31580		SRZ22, RSZP22, ...	RS-containing zinc finger prot...		Potri.018G009100 [exp]	34.20	0.7914	SRZ.4

Compare expression of checked genes

Potri.001G128700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.