Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G45580 221 / 2e-71 GARP Homeodomain-like superfamily protein (.1) AT4G13640 162 / 4e-48 GARP UNE16 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) AT3G24120 160 / 1e-47 GARP Homeodomain-like superfamily protein (.1.2) AT5G18240 145 / 1e-40 GARP MYR1, ATMYR1 ARABIDOPSIS MYB-RELATED PROTEIN 1, myb-related protein 1 (.1.2.3.4.5) AT3G04030 143 / 4e-40 GARP Homeodomain-like superfamily protein (.1.2.3) AT1G79430 140 / 4e-39 GARP WDY, APL WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) AT3G12730 129 / 3e-36 GARP Homeodomain-like superfamily protein (.1) AT1G69580 120 / 1e-31 GARP Homeodomain-like superfamily protein (.1.2) AT2G01060 109 / 4e-28 GARP myb-like HTH transcriptional regulator family protein (.1.2) AT3G13040 100 / 8e-24 GARP myb-like HTH transcriptional regulator family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G100100 [exp] 457 / 3e-164 AT5G45580 240 / 6e-79 Homeodomain-like superfamily protein (.1) Potri.017G054800 [exp] 157 / 4e-46 AT4G13640 338 / 6e-117 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.001G314800 [exp] 156 / 6e-46 AT4G13640 345 / 2e-119 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Potri.013G060200 [exp] 142 / 3e-39 AT3G04030 462 / 3e-162 Homeodomain-like superfamily protein (.1.2.3) Potri.019G032700 [exp] 141 / 3e-39 AT3G04030 449 / 2e-157 Homeodomain-like superfamily protein (.1.2.3) Potri.011G023600 [exp] 130 / 3e-36 AT1G79430 180 / 1e-54 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.008G081800 [exp] 129 / 4e-35 AT1G79430 335 / 6e-114 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.010G174100 [exp] 129 / 6e-35 AT1G79430 356 / 4e-122 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Potri.016G001200 [exp] 127 / 9e-35 AT4G13640 193 / 5e-60 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010404 [exp] 211 / 2e-67 AT5G45580 216 / 9e-70 Homeodomain-like superfamily protein (.1) Lus10012142 [exp] 198 / 3e-62 AT5G45580 215 / 2e-69 Homeodomain-like superfamily protein (.1) Lus10007132 [exp] 157 / 7e-46 AT4G13640 390 / 3e-137 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10016676 [exp] 156 / 1e-45 AT4G13640 380 / 2e-133 unfertilized embryo sac 16, Homeodomain-like superfamily protein (.1.2) Lus10002629 [exp] 144 / 5e-40 AT3G04030 440 / 9e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10020264 [exp] 143 / 8e-40 AT3G04030 441 / 4e-154 Homeodomain-like superfamily protein (.1.2.3) Lus10037169 [exp] 136 / 3e-38 AT1G69580 252 / 9e-83 Homeodomain-like superfamily protein (.1.2) Lus10036758 [exp] 134 / 2e-37 AT1G69580 258 / 9e-85 Homeodomain-like superfamily protein (.1.2) Lus10001754 [exp] 136 / 9e-37 AT1G79430 292 / 2e-95 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2) Lus10001844 [exp] 135 / 3e-36 AT1G79430 286 / 3e-93 WOODY, ALTERED PHLOEM DEVELOPMENT, Homeodomain-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00249 [poplar] [flax] Myb_DNA-binding Myb-like DNA-binding domain CL0123 [poplar] [flax] PF14379 [poplar] [flax] Myb_CC_LHEQLE MYB-CC type transfactor, LHEQLE motif
Representative CDS sequence Show only first row Show all	>Potri.001G133400.1 pacid=42789790 polypeptide=Potri.001G133400.1.p locus=Potri.001G133400 ID=Potri.001G133400.1.v4.1 annot-version=v4.1 ATGGAGAGAACAACATTTGGTGGGGGAGGGAATTATCCATACGAGAATGGGATGGTGATGATGACAAGAGACCCTAAGCCAAGACTTAGATGGACTGCTG ATCTTCATGATCGTTTTGTTGATGCTGTCACCAAGCTTGGTGGCCCTGACAAGGCAACTCCAAAGTCAGTATTGAGGTTAATGGGATTAAAGGGTTTGAC ATTGTACCACTTAAAGAGTCATTTACAGAAATACAGACTAGGGCACCAGGCTCGGAGACAGAACATTTCAGAACAAAGCAGGGAGAGCAGAGGGGCTTCA TATGTAAACTTCAGTCATGGTTCCTCAGCGACAAGTACCAGTTCACCAAGAATGGATAAAGAACAAGGAGAAATCCCAGTTGCAGAGGCATTGGACAGTC AGATTGAAGTACAGAAAACATTACAAGAACAGCTTGAGGTACAGCAGAAGCTGCAGATGAGAATAGAGGCACAAGGGAAGTACTTGCAGTCCATACTGGA GAAAGCCCAGAAGAGCCTCTCACAGAACTTGAATGACGACGGAAATGGGAATTTAGAAGCTACAAGAGCTCAATTAACAGGCTTCAATTTGGCTATATCT AGTCTCATTGAGAATTTGAATGCAGAAGATAGGAAACCATGCATCACTGATTTGAAAGGTGTCAATATCAGGACAAATGGTTCGGCTATCCATATCGATA GAGAGGGACAGACACAGGAAACTAAAGATGTGAAGCACCACCTTCAAGGAGATTCCATACATTTTGACTTAAACACCAAGGGTACCTATGATTTTGTTGC TGCAAATGGATCTGAGTTAGAACTCAAAATGCTTTCATATAGGAGATAA
AA sequence Show only first row Show all	>Potri.001G133400.1 pacid=42789790 polypeptide=Potri.001G133400.1.p locus=Potri.001G133400 ID=Potri.001G133400.1.v4.1 annot-version=v4.1 MERTTFGGGGNYPYENGMVMMTRDPKPRLRWTADLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGHQARRQNISEQSRESRGAS YVNFSHGSSATSTSSPRMDKEQGEIPVAEALDSQIEVQKTLQEQLEVQQKLQMRIEAQGKYLQSILEKAQKSLSQNLNDDGNGNLEATRAQLTGFNLAIS SLIENLNAEDRKPCITDLKGVNIRTNGSAIHIDREGQTQETKDVKHHLQGDSIHFDLNTKGTYDFVAANGSELELKMLSYRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G45580	GARP		Homeodomain-like superfamily p...		Potri.001G133400 [exp]	0	1
AT1G65810			P-loop containing nucleoside t...		Potri.004G077650 [exp]	2.00	0.8362
AT1G65810			P-loop containing nucleoside t...		Potri.004G077100 [exp]	3.16	0.8019
AT1G65780			P-loop containing nucleoside t...		Potri.017G140200 [exp]	7.93	0.7903
AT4G34160		CYCD3;1	CYCLIN D3;1 (.1)		Potri.002G123000 [exp]	11.22	0.7483	Pt-CYCD1.3
AT1G06330			Heavy metal transport/detoxifi...		Potri.002G005300 [exp]	12.44	0.7556
AT3G13890	MYB	ATMYB26, MS35	MALE STERILE 35, myb domain pr...		Potri.001G197000 [exp]	13.85	0.6935
					Potri.001G098901 [exp]	15.87	0.7280
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G187900 [exp]	16.09	0.7431
AT1G53470		MSL4	mechanosensitive channel of sm...		Potri.005G246600 [exp]	18.33	0.7722
AT5G42680			Protein of unknown function, D...		Potri.002G128800 [exp]	22.18	0.6532

Compare expression of checked genes

Potri.001G133400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.